data_6Q2X
#
_model_server_result.job_id            nwWQU5mdDqQMv_kXdKAMIA 
_model_server_result.datetime_utc      '2025-03-09 02:24:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6Q2X 
#
_exptl.entry_id    6Q2X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q2X 
_cell.length_a            59.096 
_cell.length_b            59.096 
_cell.length_c            158.949 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q2X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             153 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              367 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            MYR 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MYR 
_struct_conn.ptnr2_auth_seq_id              502 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.789 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6Q2X 
_atom_sites.fract_transf_matrix[1][1]    0.016922 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 501 1 GOL GOL . 
D 4 MYR A 1 502 1 MYR MYR . 
E 5 HOH A 1 601 66 HOH HOH . 
E 5 HOH A 2 602 48 HOH HOH . 
E 5 HOH A 3 603 16 HOH HOH . 
E 5 HOH A 4 604 93 HOH HOH . 
E 5 HOH A 5 605 45 HOH HOH . 
E 5 HOH A 6 606 14 HOH HOH . 
E 5 HOH A 7 607 1 HOH HOH . 
E 5 HOH A 8 608 30 HOH HOH . 
E 5 HOH A 9 609 57 HOH HOH . 
E 5 HOH A 10 610 91 HOH HOH . 
E 5 HOH A 11 611 2 HOH HOH . 
E 5 HOH A 12 612 53 HOH HOH . 
E 5 HOH A 13 613 7 HOH HOH . 
E 5 HOH A 14 614 6 HOH HOH . 
E 5 HOH A 15 615 20 HOH HOH . 
E 5 HOH A 16 616 42 HOH HOH . 
E 5 HOH A 17 617 21 HOH HOH . 
E 5 HOH A 18 618 49 HOH HOH . 
E 5 HOH A 19 619 116 HOH HOH . 
E 5 HOH A 20 620 35 HOH HOH . 
E 5 HOH A 21 621 70 HOH HOH . 
E 5 HOH A 22 622 97 HOH HOH . 
E 5 HOH A 23 623 13 HOH HOH . 
E 5 HOH A 24 624 115 HOH HOH . 
E 5 HOH A 25 625 75 HOH HOH . 
E 5 HOH A 26 626 86 HOH HOH . 
E 5 HOH A 27 627 33 HOH HOH . 
E 5 HOH A 28 628 24 HOH HOH . 
E 5 HOH A 29 629 29 HOH HOH . 
E 5 HOH A 30 630 95 HOH HOH . 
E 5 HOH A 31 631 90 HOH HOH . 
E 5 HOH A 32 632 120 HOH HOH . 
E 5 HOH A 33 633 11 HOH HOH . 
E 5 HOH A 34 634 71 HOH HOH . 
E 5 HOH A 35 635 12 HOH HOH . 
E 5 HOH A 36 636 38 HOH HOH . 
E 5 HOH A 37 637 44 HOH HOH . 
E 5 HOH A 38 638 4 HOH HOH . 
E 5 HOH A 39 639 18 HOH HOH . 
E 5 HOH A 40 640 3 HOH HOH . 
E 5 HOH A 41 641 74 HOH HOH . 
E 5 HOH A 42 642 10 HOH HOH . 
E 5 HOH A 43 643 82 HOH HOH . 
E 5 HOH A 44 644 80 HOH HOH . 
E 5 HOH A 45 645 96 HOH HOH . 
E 5 HOH A 46 646 101 HOH HOH . 
E 5 HOH A 47 647 60 HOH HOH . 
E 5 HOH A 48 648 17 HOH HOH . 
E 5 HOH A 49 649 5 HOH HOH . 
E 5 HOH A 50 650 68 HOH HOH . 
E 5 HOH A 51 651 92 HOH HOH . 
E 5 HOH A 52 652 34 HOH HOH . 
E 5 HOH A 53 653 102 HOH HOH . 
E 5 HOH A 54 654 31 HOH HOH . 
E 5 HOH A 55 655 41 HOH HOH . 
E 5 HOH A 56 656 88 HOH HOH . 
E 5 HOH A 57 657 19 HOH HOH . 
E 5 HOH A 58 658 8 HOH HOH . 
E 5 HOH A 59 659 83 HOH HOH . 
E 5 HOH A 60 660 73 HOH HOH . 
E 5 HOH A 61 661 58 HOH HOH . 
E 5 HOH A 62 662 37 HOH HOH . 
E 5 HOH A 63 663 39 HOH HOH . 
E 5 HOH A 64 664 52 HOH HOH . 
E 5 HOH A 65 665 50 HOH HOH . 
E 5 HOH A 66 666 43 HOH HOH . 
E 5 HOH A 67 667 27 HOH HOH . 
E 5 HOH A 68 668 54 HOH HOH . 
E 5 HOH A 69 669 108 HOH HOH . 
E 5 HOH A 70 670 36 HOH HOH . 
E 5 HOH A 71 671 32 HOH HOH . 
E 5 HOH A 72 672 103 HOH HOH . 
E 5 HOH A 73 673 15 HOH HOH . 
E 5 HOH A 74 674 62 HOH HOH . 
E 5 HOH A 75 675 22 HOH HOH . 
E 5 HOH A 76 676 111 HOH HOH . 
E 5 HOH A 77 677 112 HOH HOH . 
E 5 HOH A 78 678 85 HOH HOH . 
E 5 HOH A 79 679 46 HOH HOH . 
E 5 HOH A 80 680 114 HOH HOH . 
E 5 HOH A 81 681 109 HOH HOH . 
E 5 HOH A 82 682 77 HOH HOH . 
E 5 HOH A 83 683 118 HOH HOH . 
E 5 HOH A 84 684 89 HOH HOH . 
E 5 HOH A 85 685 113 HOH HOH . 
E 5 HOH A 86 686 104 HOH HOH . 
E 5 HOH A 87 687 79 HOH HOH . 
E 5 HOH A 88 688 61 HOH HOH . 
E 5 HOH A 89 689 106 HOH HOH . 
E 5 HOH A 90 690 9 HOH HOH . 
E 5 HOH A 91 691 117 HOH HOH . 
E 5 HOH A 92 692 69 HOH HOH . 
E 5 HOH A 93 693 84 HOH HOH . 
E 5 HOH A 94 694 98 HOH HOH . 
E 5 HOH A 95 695 100 HOH HOH . 
E 5 HOH A 96 696 65 HOH HOH . 
E 5 HOH A 97 697 64 HOH HOH . 
F 5 HOH L 1 201 110 HOH HOH . 
F 5 HOH L 2 202 56 HOH HOH . 
F 5 HOH L 3 203 78 HOH HOH . 
F 5 HOH L 4 204 67 HOH HOH . 
F 5 HOH L 5 205 23 HOH HOH . 
F 5 HOH L 6 206 28 HOH HOH . 
F 5 HOH L 7 207 94 HOH HOH . 
F 5 HOH L 8 208 26 HOH HOH . 
F 5 HOH L 9 209 51 HOH HOH . 
F 5 HOH L 10 210 87 HOH HOH . 
F 5 HOH L 11 211 119 HOH HOH . 
F 5 HOH L 12 212 81 HOH HOH . 
F 5 HOH L 13 213 40 HOH HOH . 
F 5 HOH L 14 214 59 HOH HOH . 
F 5 HOH L 15 215 63 HOH HOH . 
F 5 HOH L 16 216 107 HOH HOH . 
F 5 HOH L 17 217 55 HOH HOH . 
F 5 HOH L 18 218 99 HOH HOH . 
F 5 HOH L 19 219 25 HOH HOH . 
F 5 HOH L 20 220 47 HOH HOH . 
F 5 HOH L 21 221 76 HOH HOH . 
F 5 HOH L 22 222 72 HOH HOH . 
F 5 HOH L 23 223 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 1.842 1.169 2.831 1 47.82 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . C 3 3.24 1.084 2.639 1 47.4 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . C 3 1.325 -0.039 3.614 1 49.36 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . C 3 2.213 -0.408 4.638 1 49.73 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . C 3 -0.036 0.231 4.242 1 49.65 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . C 3 -0.735 -0.992 4.337 1 49.77 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#