data_6Q38
#
_model_server_result.job_id            wnZhz9Xlubjpnnrb588Wjw 
_model_server_result.datetime_utc      '2025-02-05 19:07:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q38 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6Q38 
#
_exptl.entry_id    6Q38 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BENZOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q38 
_cell.length_a            60.887 
_cell.length_b            127.752 
_cell.length_c            54.499 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q38 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 B CA GLY 3 B GLY 3 1_555 D C5 A1H27 . B A1H27 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? 
covale ? covale3 B CA GLY 12 B GLY 12 1_555 D C16 A1H27 . B A1H27 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? 
covale ? covale4 B C GLY 14 B GLY 14 1_555 B N NH2 15 B NH2 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C7 H6 O2' 
_chem_comp.formula_weight    122.121 
_chem_comp.id                BEZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BENZOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 BEZ doub 111 n n 
C O2 BEZ sing 112 n n 
C C1 BEZ sing 113 n n 
O2 HO2 BEZ sing 114 n n 
C1 C2 BEZ doub 115 n y 
C1 C6 BEZ sing 116 n y 
C2 C3 BEZ sing 117 n y 
C2 H2 BEZ sing 118 n n 
C3 C4 BEZ doub 119 n y 
C3 H3 BEZ sing 120 n n 
C4 C5 BEZ sing 121 n y 
C4 H4 BEZ sing 122 n n 
C5 C6 BEZ doub 123 n y 
C5 H5 BEZ sing 124 n n 
C6 H6 BEZ sing 125 n n 
#
_atom_sites.entry_id                     6Q38 
_atom_sites.fract_transf_matrix[1][1]    0.016424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007828 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BEZ A 1 401 401 BEZ BEZ . 
D 4 A1H27 B 1 16 80 A1H27 475 . 
E 5 HOH A 1 501 128 HOH HOH . 
E 5 HOH A 2 502 130 HOH HOH . 
E 5 HOH A 3 503 48 HOH HOH . 
E 5 HOH A 4 504 135 HOH HOH . 
E 5 HOH A 5 505 138 HOH HOH . 
E 5 HOH A 6 506 137 HOH HOH . 
E 5 HOH A 7 507 17 HOH HOH . 
E 5 HOH A 8 508 131 HOH HOH . 
E 5 HOH A 9 509 140 HOH HOH . 
E 5 HOH A 10 510 27 HOH HOH . 
E 5 HOH A 11 511 118 HOH HOH . 
E 5 HOH A 12 512 37 HOH HOH . 
E 5 HOH A 13 513 11 HOH HOH . 
E 5 HOH A 14 514 13 HOH HOH . 
E 5 HOH A 15 515 139 HOH HOH . 
E 5 HOH A 16 516 22 HOH HOH . 
E 5 HOH A 17 517 116 HOH HOH . 
E 5 HOH A 18 518 5 HOH HOH . 
E 5 HOH A 19 519 63 HOH HOH . 
E 5 HOH A 20 520 129 HOH HOH . 
E 5 HOH A 21 521 103 HOH HOH . 
E 5 HOH A 22 522 113 HOH HOH . 
E 5 HOH A 23 523 124 HOH HOH . 
E 5 HOH A 24 524 117 HOH HOH . 
E 5 HOH A 25 525 4 HOH HOH . 
E 5 HOH A 26 526 61 HOH HOH . 
E 5 HOH A 27 527 12 HOH HOH . 
E 5 HOH A 28 528 84 HOH HOH . 
E 5 HOH A 29 529 100 HOH HOH . 
E 5 HOH A 30 530 45 HOH HOH . 
E 5 HOH A 31 531 80 HOH HOH . 
E 5 HOH A 32 532 123 HOH HOH . 
E 5 HOH A 33 533 68 HOH HOH . 
E 5 HOH A 34 534 112 HOH HOH . 
E 5 HOH A 35 535 75 HOH HOH . 
E 5 HOH A 36 536 34 HOH HOH . 
E 5 HOH A 37 537 62 HOH HOH . 
E 5 HOH A 38 538 79 HOH HOH . 
E 5 HOH A 39 539 74 HOH HOH . 
E 5 HOH A 40 540 119 HOH HOH . 
E 5 HOH A 41 541 42 HOH HOH . 
E 5 HOH A 42 542 55 HOH HOH . 
E 5 HOH A 43 543 19 HOH HOH . 
E 5 HOH A 44 544 102 HOH HOH . 
E 5 HOH A 45 545 28 HOH HOH . 
E 5 HOH A 46 546 1 HOH HOH . 
E 5 HOH A 47 547 47 HOH HOH . 
E 5 HOH A 48 548 38 HOH HOH . 
E 5 HOH A 49 549 2 HOH HOH . 
E 5 HOH A 50 550 53 HOH HOH . 
E 5 HOH A 51 551 51 HOH HOH . 
E 5 HOH A 52 552 110 HOH HOH . 
E 5 HOH A 53 553 58 HOH HOH . 
E 5 HOH A 54 554 106 HOH HOH . 
E 5 HOH A 55 555 72 HOH HOH . 
E 5 HOH A 56 556 41 HOH HOH . 
E 5 HOH A 57 557 39 HOH HOH . 
E 5 HOH A 58 558 69 HOH HOH . 
E 5 HOH A 59 559 83 HOH HOH . 
E 5 HOH A 60 560 32 HOH HOH . 
E 5 HOH A 61 561 20 HOH HOH . 
E 5 HOH A 62 562 141 HOH HOH . 
E 5 HOH A 63 563 70 HOH HOH . 
E 5 HOH A 64 564 81 HOH HOH . 
E 5 HOH A 65 565 98 HOH HOH . 
E 5 HOH A 66 566 6 HOH HOH . 
E 5 HOH A 67 567 71 HOH HOH . 
E 5 HOH A 68 568 67 HOH HOH . 
E 5 HOH A 69 569 82 HOH HOH . 
E 5 HOH A 70 570 91 HOH HOH . 
E 5 HOH A 71 571 14 HOH HOH . 
E 5 HOH A 72 572 21 HOH HOH . 
E 5 HOH A 73 573 114 HOH HOH . 
E 5 HOH A 74 574 85 HOH HOH . 
E 5 HOH A 75 575 78 HOH HOH . 
E 5 HOH A 76 576 26 HOH HOH . 
E 5 HOH A 77 577 23 HOH HOH . 
E 5 HOH A 78 578 96 HOH HOH . 
E 5 HOH A 79 579 121 HOH HOH . 
E 5 HOH A 80 580 8 HOH HOH . 
E 5 HOH A 81 581 46 HOH HOH . 
E 5 HOH A 82 582 9 HOH HOH . 
E 5 HOH A 83 583 89 HOH HOH . 
E 5 HOH A 84 584 122 HOH HOH . 
E 5 HOH A 85 585 24 HOH HOH . 
E 5 HOH A 86 586 65 HOH HOH . 
E 5 HOH A 87 587 30 HOH HOH . 
E 5 HOH A 88 588 50 HOH HOH . 
E 5 HOH A 89 589 97 HOH HOH . 
E 5 HOH A 90 590 33 HOH HOH . 
E 5 HOH A 91 591 111 HOH HOH . 
E 5 HOH A 92 592 66 HOH HOH . 
E 5 HOH A 93 593 60 HOH HOH . 
E 5 HOH A 94 594 125 HOH HOH . 
E 5 HOH A 95 595 35 HOH HOH . 
E 5 HOH A 96 596 120 HOH HOH . 
E 5 HOH A 97 597 93 HOH HOH . 
E 5 HOH A 98 598 88 HOH HOH . 
E 5 HOH A 99 599 105 HOH HOH . 
E 5 HOH A 100 600 92 HOH HOH . 
E 5 HOH A 101 601 31 HOH HOH . 
E 5 HOH A 102 602 86 HOH HOH . 
E 5 HOH A 103 603 115 HOH HOH . 
E 5 HOH A 104 604 44 HOH HOH . 
E 5 HOH A 105 605 73 HOH HOH . 
E 5 HOH A 106 606 95 HOH HOH . 
E 5 HOH A 107 607 108 HOH HOH . 
E 5 HOH A 108 608 107 HOH HOH . 
F 5 HOH B 1 201 132 HOH HOH . 
F 5 HOH B 2 202 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BEZ . . . C 3 12.971 44.53 15.93 1 46.25 ? C BEZ 401 A 1 
HETATM 2 O O1 BEZ . . . C 3 13.183 44.507 14.707 1 44.17 ? O1 BEZ 401 A 1 
HETATM 3 O O2 BEZ . . . C 3 11.787 44.321 16.47 1 46.11 ? O2 BEZ 401 A 1 
HETATM 4 C C1 BEZ . . . C 3 14.067 44.804 16.906 1 47.42 ? C1 BEZ 401 A 1 
HETATM 5 C C2 BEZ . . . C 3 15.378 44.99 16.466 1 52.98 ? C2 BEZ 401 A 1 
HETATM 6 C C3 BEZ . . . C 3 16.412 45.143 17.381 1 54.47 ? C3 BEZ 401 A 1 
HETATM 7 C C4 BEZ . . . C 3 16.146 45.142 18.739 1 51.42 ? C4 BEZ 401 A 1 
HETATM 8 C C5 BEZ . . . C 3 14.845 45.004 19.184 1 51.52 ? C5 BEZ 401 A 1 
HETATM 9 C C6 BEZ . . . C 3 13.809 44.832 18.277 1 50.74 ? C6 BEZ 401 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           9 
#