data_6Q3X
#
_model_server_result.job_id            3OycM5WGqLRL1ibVkeDWrg 
_model_server_result.datetime_utc      '2024-11-22 15:54:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    6Q3X 
#
_exptl.entry_id    6Q3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q3X 
_cell.length_a            107.73 
_cell.length_b            151.68 
_cell.length_c            230.58 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             392 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              391 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             392 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              391 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.023 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 313 n n 
C1 H11 MPD sing 314 n n 
C1 H12 MPD sing 315 n n 
C1 H13 MPD sing 316 n n 
C2 O2 MPD sing 317 n n 
C2 CM MPD sing 318 n n 
C2 C3 MPD sing 319 n n 
O2 HO2 MPD sing 320 n n 
CM HM1 MPD sing 321 n n 
CM HM2 MPD sing 322 n n 
CM HM3 MPD sing 323 n n 
C3 C4 MPD sing 324 n n 
C3 H31 MPD sing 325 n n 
C3 H32 MPD sing 326 n n 
C4 O4 MPD sing 327 n n 
C4 C5 MPD sing 328 n n 
C4 H4 MPD sing 329 n n 
O4 HO4 MPD sing 330 n n 
C5 H51 MPD sing 331 n n 
C5 H52 MPD sing 332 n n 
C5 H53 MPD sing 333 n n 
#
_atom_sites.entry_id                     6Q3X 
_atom_sites.fract_transf_matrix[1][1]    0.009282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004337 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GAL A 1 401 393 GAL GAL . 
D 3 MPD A 1 402 601 MPD MPD . 
E 3 MPD A 1 403 701 MPD MPD . 
F 3 MPD A 1 404 801 MPD MPD . 
G 4 HFK A 1 405 1 HFK LIG . 
H 2 GAL B 1 401 393 GAL GAL . 
I 3 MPD B 1 402 401 MPD MPD . 
J 3 MPD B 1 403 601 MPD MPD . 
K 4 HFK B 1 404 2 HFK LIG . 
L 5 HOH A 1 501 238 HOH HOH . 
L 5 HOH A 2 502 105 HOH HOH . 
L 5 HOH A 3 503 228 HOH HOH . 
L 5 HOH A 4 504 153 HOH HOH . 
L 5 HOH A 5 505 114 HOH HOH . 
L 5 HOH A 6 506 219 HOH HOH . 
L 5 HOH A 7 507 128 HOH HOH . 
L 5 HOH A 8 508 90 HOH HOH . 
L 5 HOH A 9 509 65 HOH HOH . 
L 5 HOH A 10 510 243 HOH HOH . 
L 5 HOH A 11 511 109 HOH HOH . 
L 5 HOH A 12 512 216 HOH HOH . 
L 5 HOH A 13 513 48 HOH HOH . 
L 5 HOH A 14 514 92 HOH HOH . 
L 5 HOH A 15 515 221 HOH HOH . 
L 5 HOH A 16 516 102 HOH HOH . 
L 5 HOH A 17 517 41 HOH HOH . 
L 5 HOH A 18 518 196 HOH HOH . 
L 5 HOH A 19 519 166 HOH HOH . 
L 5 HOH A 20 520 167 HOH HOH . 
L 5 HOH A 21 521 122 HOH HOH . 
L 5 HOH A 22 522 206 HOH HOH . 
L 5 HOH A 23 523 168 HOH HOH . 
L 5 HOH A 24 524 155 HOH HOH . 
L 5 HOH A 25 525 29 HOH HOH . 
L 5 HOH A 26 526 129 HOH HOH . 
L 5 HOH A 27 527 223 HOH HOH . 
L 5 HOH A 28 528 115 HOH HOH . 
L 5 HOH A 29 529 218 HOH HOH . 
L 5 HOH A 30 530 189 HOH HOH . 
L 5 HOH A 31 531 197 HOH HOH . 
L 5 HOH A 32 532 204 HOH HOH . 
L 5 HOH A 33 533 45 HOH HOH . 
L 5 HOH A 34 534 4 HOH HOH . 
L 5 HOH A 35 535 23 HOH HOH . 
L 5 HOH A 36 536 133 HOH HOH . 
L 5 HOH A 37 537 18 HOH HOH . 
L 5 HOH A 38 538 239 HOH HOH . 
L 5 HOH A 39 539 126 HOH HOH . 
L 5 HOH A 40 540 240 HOH HOH . 
L 5 HOH A 41 541 13 HOH HOH . 
L 5 HOH A 42 542 32 HOH HOH . 
L 5 HOH A 43 543 227 HOH HOH . 
L 5 HOH A 44 544 222 HOH HOH . 
L 5 HOH A 45 545 11 HOH HOH . 
L 5 HOH A 46 546 217 HOH HOH . 
L 5 HOH A 47 547 10 HOH HOH . 
L 5 HOH A 48 548 34 HOH HOH . 
L 5 HOH A 49 549 33 HOH HOH . 
L 5 HOH A 50 550 252 HOH HOH . 
L 5 HOH A 51 551 43 HOH HOH . 
L 5 HOH A 52 552 177 HOH HOH . 
L 5 HOH A 53 553 237 HOH HOH . 
L 5 HOH A 54 554 104 HOH HOH . 
L 5 HOH A 55 555 229 HOH HOH . 
L 5 HOH A 56 556 139 HOH HOH . 
L 5 HOH A 57 557 192 HOH HOH . 
L 5 HOH A 58 558 60 HOH HOH . 
L 5 HOH A 59 559 24 HOH HOH . 
L 5 HOH A 60 560 54 HOH HOH . 
L 5 HOH A 61 561 184 HOH HOH . 
L 5 HOH A 62 562 7 HOH HOH . 
L 5 HOH A 63 563 123 HOH HOH . 
L 5 HOH A 64 564 144 HOH HOH . 
L 5 HOH A 65 565 236 HOH HOH . 
L 5 HOH A 66 566 121 HOH HOH . 
L 5 HOH A 67 567 225 HOH HOH . 
L 5 HOH A 68 568 111 HOH HOH . 
L 5 HOH A 69 569 127 HOH HOH . 
L 5 HOH A 70 570 241 HOH HOH . 
L 5 HOH A 71 571 185 HOH HOH . 
L 5 HOH A 72 572 134 HOH HOH . 
L 5 HOH A 73 573 5 HOH HOH . 
L 5 HOH A 74 574 258 HOH HOH . 
L 5 HOH A 75 575 260 HOH HOH . 
L 5 HOH A 76 576 124 HOH HOH . 
L 5 HOH A 77 577 230 HOH HOH . 
L 5 HOH A 78 578 157 HOH HOH . 
L 5 HOH A 79 579 148 HOH HOH . 
L 5 HOH A 80 580 68 HOH HOH . 
L 5 HOH A 81 581 137 HOH HOH . 
L 5 HOH A 82 582 131 HOH HOH . 
L 5 HOH A 83 583 233 HOH HOH . 
L 5 HOH A 84 584 125 HOH HOH . 
L 5 HOH A 85 585 83 HOH HOH . 
L 5 HOH A 86 586 66 HOH HOH . 
L 5 HOH A 87 587 224 HOH HOH . 
L 5 HOH A 88 588 73 HOH HOH . 
L 5 HOH A 89 589 220 HOH HOH . 
L 5 HOH A 90 590 183 HOH HOH . 
L 5 HOH A 91 591 244 HOH HOH . 
L 5 HOH A 92 592 3 HOH HOH . 
L 5 HOH A 93 593 20 HOH HOH . 
L 5 HOH A 94 594 205 HOH HOH . 
L 5 HOH A 95 595 120 HOH HOH . 
L 5 HOH A 96 596 253 HOH HOH . 
L 5 HOH A 97 597 86 HOH HOH . 
L 5 HOH A 98 598 256 HOH HOH . 
L 5 HOH A 99 599 84 HOH HOH . 
L 5 HOH A 100 600 138 HOH HOH . 
L 5 HOH A 101 601 199 HOH HOH . 
L 5 HOH A 102 602 226 HOH HOH . 
L 5 HOH A 103 603 163 HOH HOH . 
L 5 HOH A 104 604 188 HOH HOH . 
L 5 HOH A 105 605 231 HOH HOH . 
L 5 HOH A 106 606 119 HOH HOH . 
M 5 HOH B 1 501 142 HOH HOH . 
M 5 HOH B 2 502 209 HOH HOH . 
M 5 HOH B 3 503 118 HOH HOH . 
M 5 HOH B 4 504 39 HOH HOH . 
M 5 HOH B 5 505 235 HOH HOH . 
M 5 HOH B 6 506 21 HOH HOH . 
M 5 HOH B 7 507 213 HOH HOH . 
M 5 HOH B 8 508 247 HOH HOH . 
M 5 HOH B 9 509 195 HOH HOH . 
M 5 HOH B 10 510 259 HOH HOH . 
M 5 HOH B 11 511 181 HOH HOH . 
M 5 HOH B 12 512 78 HOH HOH . 
M 5 HOH B 13 513 212 HOH HOH . 
M 5 HOH B 14 514 234 HOH HOH . 
M 5 HOH B 15 515 172 HOH HOH . 
M 5 HOH B 16 516 210 HOH HOH . 
M 5 HOH B 17 517 257 HOH HOH . 
M 5 HOH B 18 518 179 HOH HOH . 
M 5 HOH B 19 519 208 HOH HOH . 
M 5 HOH B 20 520 178 HOH HOH . 
M 5 HOH B 21 521 28 HOH HOH . 
M 5 HOH B 22 522 77 HOH HOH . 
M 5 HOH B 23 523 250 HOH HOH . 
M 5 HOH B 24 524 53 HOH HOH . 
M 5 HOH B 25 525 194 HOH HOH . 
M 5 HOH B 26 526 201 HOH HOH . 
M 5 HOH B 27 527 49 HOH HOH . 
M 5 HOH B 28 528 47 HOH HOH . 
M 5 HOH B 29 529 101 HOH HOH . 
M 5 HOH B 30 530 19 HOH HOH . 
M 5 HOH B 31 531 140 HOH HOH . 
M 5 HOH B 32 532 112 HOH HOH . 
M 5 HOH B 33 533 214 HOH HOH . 
M 5 HOH B 34 534 50 HOH HOH . 
M 5 HOH B 35 535 63 HOH HOH . 
M 5 HOH B 36 536 14 HOH HOH . 
M 5 HOH B 37 537 103 HOH HOH . 
M 5 HOH B 38 538 242 HOH HOH . 
M 5 HOH B 39 539 57 HOH HOH . 
M 5 HOH B 40 540 27 HOH HOH . 
M 5 HOH B 41 541 135 HOH HOH . 
M 5 HOH B 42 542 56 HOH HOH . 
M 5 HOH B 43 543 215 HOH HOH . 
M 5 HOH B 44 544 141 HOH HOH . 
M 5 HOH B 45 545 81 HOH HOH . 
M 5 HOH B 46 546 248 HOH HOH . 
M 5 HOH B 47 547 152 HOH HOH . 
M 5 HOH B 48 548 44 HOH HOH . 
M 5 HOH B 49 549 26 HOH HOH . 
M 5 HOH B 50 550 88 HOH HOH . 
M 5 HOH B 51 551 25 HOH HOH . 
M 5 HOH B 52 552 12 HOH HOH . 
M 5 HOH B 53 553 67 HOH HOH . 
M 5 HOH B 54 554 246 HOH HOH . 
M 5 HOH B 55 555 74 HOH HOH . 
M 5 HOH B 56 556 145 HOH HOH . 
M 5 HOH B 57 557 175 HOH HOH . 
M 5 HOH B 58 558 106 HOH HOH . 
M 5 HOH B 59 559 22 HOH HOH . 
M 5 HOH B 60 560 6 HOH HOH . 
M 5 HOH B 61 561 37 HOH HOH . 
M 5 HOH B 62 562 8 HOH HOH . 
M 5 HOH B 63 563 46 HOH HOH . 
M 5 HOH B 64 564 130 HOH HOH . 
M 5 HOH B 65 565 154 HOH HOH . 
M 5 HOH B 66 566 174 HOH HOH . 
M 5 HOH B 67 567 186 HOH HOH . 
M 5 HOH B 68 568 69 HOH HOH . 
M 5 HOH B 69 569 207 HOH HOH . 
M 5 HOH B 70 570 16 HOH HOH . 
M 5 HOH B 71 571 203 HOH HOH . 
M 5 HOH B 72 572 42 HOH HOH . 
M 5 HOH B 73 573 160 HOH HOH . 
M 5 HOH B 74 574 156 HOH HOH . 
M 5 HOH B 75 575 95 HOH HOH . 
M 5 HOH B 76 576 193 HOH HOH . 
M 5 HOH B 77 577 2 HOH HOH . 
M 5 HOH B 78 578 158 HOH HOH . 
M 5 HOH B 79 579 255 HOH HOH . 
M 5 HOH B 80 580 191 HOH HOH . 
M 5 HOH B 81 581 254 HOH HOH . 
M 5 HOH B 82 582 107 HOH HOH . 
M 5 HOH B 83 583 251 HOH HOH . 
M 5 HOH B 84 584 232 HOH HOH . 
M 5 HOH B 85 585 146 HOH HOH . 
M 5 HOH B 86 586 136 HOH HOH . 
M 5 HOH B 87 587 180 HOH HOH . 
M 5 HOH B 88 588 176 HOH HOH . 
M 5 HOH B 89 589 202 HOH HOH . 
M 5 HOH B 90 590 211 HOH HOH . 
M 5 HOH B 91 591 182 HOH HOH . 
M 5 HOH B 92 592 98 HOH HOH . 
M 5 HOH B 93 593 249 HOH HOH . 
M 5 HOH B 94 594 82 HOH HOH . 
M 5 HOH B 95 595 200 HOH HOH . 
M 5 HOH B 96 596 1 HOH HOH . 
M 5 HOH B 97 597 149 HOH HOH . 
M 5 HOH B 98 598 71 HOH HOH . 
M 5 HOH B 99 599 187 HOH HOH . 
M 5 HOH B 100 600 198 HOH HOH . 
M 5 HOH B 101 601 96 HOH HOH . 
M 5 HOH B 102 602 52 HOH HOH . 
M 5 HOH B 103 603 100 HOH HOH . 
M 5 HOH B 104 604 245 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 3 -16.183 62.705 41.422 1 30.4 ? C1 MPD 403 A 1 
HETATM 2 C C2 MPD . . . E 3 -17.588 62.387 40.915 1 40.63 ? C2 MPD 403 A 1 
HETATM 3 O O2 MPD . . . E 3 -17.717 60.947 40.81 1 36.8 ? O2 MPD 403 A 1 
HETATM 4 C CM MPD . . . E 3 -17.741 63.034 39.537 1 32.41 ? CM MPD 403 A 1 
HETATM 5 C C3 MPD . . . E 3 -18.664 62.882 41.893 1 37.73 ? C3 MPD 403 A 1 
HETATM 6 C C4 MPD . . . E 3 -20.076 62.904 41.294 1 40.22 ? C4 MPD 403 A 1 
HETATM 7 O O4 MPD . . . E 3 -20.415 61.632 40.772 1 44.32 ? O4 MPD 403 A 1 
HETATM 8 C C5 MPD . . . E 3 -21.116 63.292 42.349 1 34.71 ? C5 MPD 403 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#