data_6Q4A # _model_server_result.job_id Oc7XeHB2GtKgrxObyi4Wtg _model_server_result.datetime_utc '2024-11-05 05:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6Q4A # _exptl.entry_id 6Q4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.984 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-iodanylpyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q4A _cell.length_a 53.314 _cell.length_b 72.378 _cell.length_c 72.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H3 I N2' _chem_comp.formula_weight 205.984 _chem_comp.id HGW _chem_comp.mon_nstd_flag . _chem_comp.name 5-iodanylpyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N2 HGW doub 129 n y C3 N1 HGW sing 130 n y N2 C4 HGW sing 131 n y N1 C2 HGW doub 132 n y C4 C1 HGW doub 133 n y C2 C1 HGW sing 134 n y C1 I1 HGW sing 135 n n C4 H1 HGW sing 136 n n C3 H2 HGW sing 137 n n C2 H3 HGW sing 138 n n # _atom_sites.entry_id 6Q4A _atom_sites.fract_transf_matrix[1][1] 0.018757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HGW A 1 301 1 HGW DRG . C 3 HOH A 1 401 284 HOH HOH . C 3 HOH A 2 402 277 HOH HOH . C 3 HOH A 3 403 258 HOH HOH . C 3 HOH A 4 404 265 HOH HOH . C 3 HOH A 5 405 289 HOH HOH . C 3 HOH A 6 406 296 HOH HOH . C 3 HOH A 7 407 201 HOH HOH . C 3 HOH A 8 408 298 HOH HOH . C 3 HOH A 9 409 262 HOH HOH . C 3 HOH A 10 410 92 HOH HOH . C 3 HOH A 11 411 184 HOH HOH . C 3 HOH A 12 412 283 HOH HOH . C 3 HOH A 13 413 54 HOH HOH . C 3 HOH A 14 414 77 HOH HOH . C 3 HOH A 15 415 266 HOH HOH . C 3 HOH A 16 416 87 HOH HOH . C 3 HOH A 17 417 241 HOH HOH . C 3 HOH A 18 418 22 HOH HOH . C 3 HOH A 19 419 252 HOH HOH . C 3 HOH A 20 420 294 HOH HOH . C 3 HOH A 21 421 198 HOH HOH . C 3 HOH A 22 422 139 HOH HOH . C 3 HOH A 23 423 254 HOH HOH . C 3 HOH A 24 424 246 HOH HOH . C 3 HOH A 25 425 219 HOH HOH . C 3 HOH A 26 426 136 HOH HOH . C 3 HOH A 27 427 113 HOH HOH . C 3 HOH A 28 428 286 HOH HOH . C 3 HOH A 29 429 150 HOH HOH . C 3 HOH A 30 430 71 HOH HOH . C 3 HOH A 31 431 123 HOH HOH . C 3 HOH A 32 432 51 HOH HOH . C 3 HOH A 33 433 191 HOH HOH . C 3 HOH A 34 434 15 HOH HOH . C 3 HOH A 35 435 69 HOH HOH . C 3 HOH A 36 436 297 HOH HOH . C 3 HOH A 37 437 61 HOH HOH . C 3 HOH A 38 438 183 HOH HOH . C 3 HOH A 39 439 158 HOH HOH . C 3 HOH A 40 440 148 HOH HOH . C 3 HOH A 41 441 209 HOH HOH . C 3 HOH A 42 442 20 HOH HOH . C 3 HOH A 43 443 36 HOH HOH . C 3 HOH A 44 444 48 HOH HOH . C 3 HOH A 45 445 247 HOH HOH . C 3 HOH A 46 446 218 HOH HOH . C 3 HOH A 47 447 80 HOH HOH . C 3 HOH A 48 448 40 HOH HOH . C 3 HOH A 49 449 214 HOH HOH . C 3 HOH A 50 450 182 HOH HOH . C 3 HOH A 51 451 253 HOH HOH . C 3 HOH A 52 452 222 HOH HOH . C 3 HOH A 53 453 99 HOH HOH . C 3 HOH A 54 454 207 HOH HOH . C 3 HOH A 55 455 93 HOH HOH . C 3 HOH A 56 456 52 HOH HOH . C 3 HOH A 57 457 38 HOH HOH . C 3 HOH A 58 458 111 HOH HOH . C 3 HOH A 59 459 18 HOH HOH . C 3 HOH A 60 460 8 HOH HOH . C 3 HOH A 61 461 261 HOH HOH . C 3 HOH A 62 462 185 HOH HOH . C 3 HOH A 63 463 250 HOH HOH . C 3 HOH A 64 464 180 HOH HOH . C 3 HOH A 65 465 66 HOH HOH . C 3 HOH A 66 466 16 HOH HOH . C 3 HOH A 67 467 116 HOH HOH . C 3 HOH A 68 468 29 HOH HOH . C 3 HOH A 69 469 220 HOH HOH . C 3 HOH A 70 470 105 HOH HOH . C 3 HOH A 71 471 291 HOH HOH . C 3 HOH A 72 472 1 HOH HOH . C 3 HOH A 73 473 216 HOH HOH . C 3 HOH A 74 474 103 HOH HOH . C 3 HOH A 75 475 24 HOH HOH . C 3 HOH A 76 476 154 HOH HOH . C 3 HOH A 77 477 55 HOH HOH . C 3 HOH A 78 478 34 HOH HOH . C 3 HOH A 79 479 156 HOH HOH . C 3 HOH A 80 480 204 HOH HOH . C 3 HOH A 81 481 117 HOH HOH . C 3 HOH A 82 482 205 HOH HOH . C 3 HOH A 83 483 152 HOH HOH . C 3 HOH A 84 484 46 HOH HOH . C 3 HOH A 85 485 62 HOH HOH . C 3 HOH A 86 486 42 HOH HOH . C 3 HOH A 87 487 230 HOH HOH . C 3 HOH A 88 488 9 HOH HOH . C 3 HOH A 89 489 73 HOH HOH . C 3 HOH A 90 490 159 HOH HOH . C 3 HOH A 91 491 32 HOH HOH . C 3 HOH A 92 492 293 HOH HOH . C 3 HOH A 93 493 19 HOH HOH . C 3 HOH A 94 494 107 HOH HOH . C 3 HOH A 95 495 163 HOH HOH . C 3 HOH A 96 496 25 HOH HOH . C 3 HOH A 97 497 251 HOH HOH . C 3 HOH A 98 498 35 HOH HOH . C 3 HOH A 99 499 14 HOH HOH . C 3 HOH A 100 500 43 HOH HOH . C 3 HOH A 101 501 57 HOH HOH . C 3 HOH A 102 502 197 HOH HOH . C 3 HOH A 103 503 58 HOH HOH . C 3 HOH A 104 504 195 HOH HOH . C 3 HOH A 105 505 30 HOH HOH . C 3 HOH A 106 506 27 HOH HOH . C 3 HOH A 107 507 5 HOH HOH . C 3 HOH A 108 508 78 HOH HOH . C 3 HOH A 109 509 167 HOH HOH . C 3 HOH A 110 510 202 HOH HOH . C 3 HOH A 111 511 242 HOH HOH . C 3 HOH A 112 512 287 HOH HOH . C 3 HOH A 113 513 94 HOH HOH . C 3 HOH A 114 514 131 HOH HOH . C 3 HOH A 115 515 115 HOH HOH . C 3 HOH A 116 516 134 HOH HOH . C 3 HOH A 117 517 33 HOH HOH . C 3 HOH A 118 518 268 HOH HOH . C 3 HOH A 119 519 81 HOH HOH . C 3 HOH A 120 520 13 HOH HOH . C 3 HOH A 121 521 31 HOH HOH . C 3 HOH A 122 522 278 HOH HOH . C 3 HOH A 123 523 4 HOH HOH . C 3 HOH A 124 524 86 HOH HOH . C 3 HOH A 125 525 138 HOH HOH . C 3 HOH A 126 526 10 HOH HOH . C 3 HOH A 127 527 217 HOH HOH . C 3 HOH A 128 528 110 HOH HOH . C 3 HOH A 129 529 161 HOH HOH . C 3 HOH A 130 530 39 HOH HOH . C 3 HOH A 131 531 229 HOH HOH . C 3 HOH A 132 532 106 HOH HOH . C 3 HOH A 133 533 133 HOH HOH . C 3 HOH A 134 534 6 HOH HOH . C 3 HOH A 135 535 64 HOH HOH . C 3 HOH A 136 536 169 HOH HOH . C 3 HOH A 137 537 166 HOH HOH . C 3 HOH A 138 538 140 HOH HOH . C 3 HOH A 139 539 157 HOH HOH . C 3 HOH A 140 540 12 HOH HOH . C 3 HOH A 141 541 225 HOH HOH . C 3 HOH A 142 542 74 HOH HOH . C 3 HOH A 143 543 89 HOH HOH . C 3 HOH A 144 544 108 HOH HOH . C 3 HOH A 145 545 95 HOH HOH . C 3 HOH A 146 546 44 HOH HOH . C 3 HOH A 147 547 119 HOH HOH . C 3 HOH A 148 548 114 HOH HOH . C 3 HOH A 149 549 2 HOH HOH . C 3 HOH A 150 550 145 HOH HOH . C 3 HOH A 151 551 45 HOH HOH . C 3 HOH A 152 552 7 HOH HOH . C 3 HOH A 153 553 295 HOH HOH . C 3 HOH A 154 554 200 HOH HOH . C 3 HOH A 155 555 168 HOH HOH . C 3 HOH A 156 556 208 HOH HOH . C 3 HOH A 157 557 28 HOH HOH . C 3 HOH A 158 558 122 HOH HOH . C 3 HOH A 159 559 260 HOH HOH . C 3 HOH A 160 560 212 HOH HOH . C 3 HOH A 161 561 285 HOH HOH . C 3 HOH A 162 562 75 HOH HOH . C 3 HOH A 163 563 256 HOH HOH . C 3 HOH A 164 564 56 HOH HOH . C 3 HOH A 165 565 135 HOH HOH . C 3 HOH A 166 566 79 HOH HOH . C 3 HOH A 167 567 137 HOH HOH . C 3 HOH A 168 568 76 HOH HOH . C 3 HOH A 169 569 21 HOH HOH . C 3 HOH A 170 570 176 HOH HOH . C 3 HOH A 171 571 17 HOH HOH . C 3 HOH A 172 572 120 HOH HOH . C 3 HOH A 173 573 67 HOH HOH . C 3 HOH A 174 574 249 HOH HOH . C 3 HOH A 175 575 83 HOH HOH . C 3 HOH A 176 576 72 HOH HOH . C 3 HOH A 177 577 50 HOH HOH . C 3 HOH A 178 578 60 HOH HOH . C 3 HOH A 179 579 65 HOH HOH . C 3 HOH A 180 580 189 HOH HOH . C 3 HOH A 181 581 130 HOH HOH . C 3 HOH A 182 582 179 HOH HOH . C 3 HOH A 183 583 239 HOH HOH . C 3 HOH A 184 584 3 HOH HOH . C 3 HOH A 185 585 227 HOH HOH . C 3 HOH A 186 586 26 HOH HOH . C 3 HOH A 187 587 290 HOH HOH . C 3 HOH A 188 588 118 HOH HOH . C 3 HOH A 189 589 171 HOH HOH . C 3 HOH A 190 590 259 HOH HOH . C 3 HOH A 191 591 231 HOH HOH . C 3 HOH A 192 592 59 HOH HOH . C 3 HOH A 193 593 112 HOH HOH . C 3 HOH A 194 594 63 HOH HOH . C 3 HOH A 195 595 11 HOH HOH . C 3 HOH A 196 596 98 HOH HOH . C 3 HOH A 197 597 236 HOH HOH . C 3 HOH A 198 598 267 HOH HOH . C 3 HOH A 199 599 141 HOH HOH . C 3 HOH A 200 600 192 HOH HOH . C 3 HOH A 201 601 23 HOH HOH . C 3 HOH A 202 602 132 HOH HOH . C 3 HOH A 203 603 82 HOH HOH . C 3 HOH A 204 604 68 HOH HOH . C 3 HOH A 205 605 149 HOH HOH . C 3 HOH A 206 606 245 HOH HOH . C 3 HOH A 207 607 248 HOH HOH . C 3 HOH A 208 608 37 HOH HOH . C 3 HOH A 209 609 85 HOH HOH . C 3 HOH A 210 610 226 HOH HOH . C 3 HOH A 211 611 269 HOH HOH . C 3 HOH A 212 612 181 HOH HOH . C 3 HOH A 213 613 203 HOH HOH . C 3 HOH A 214 614 84 HOH HOH . C 3 HOH A 215 615 129 HOH HOH . C 3 HOH A 216 616 155 HOH HOH . C 3 HOH A 217 617 90 HOH HOH . C 3 HOH A 218 618 257 HOH HOH . C 3 HOH A 219 619 282 HOH HOH . C 3 HOH A 220 620 127 HOH HOH . C 3 HOH A 221 621 275 HOH HOH . C 3 HOH A 222 622 255 HOH HOH . C 3 HOH A 223 623 47 HOH HOH . C 3 HOH A 224 624 153 HOH HOH . C 3 HOH A 225 625 126 HOH HOH . C 3 HOH A 226 626 41 HOH HOH . C 3 HOH A 227 627 170 HOH HOH . C 3 HOH A 228 628 228 HOH HOH . C 3 HOH A 229 629 102 HOH HOH . C 3 HOH A 230 630 243 HOH HOH . C 3 HOH A 231 631 162 HOH HOH . C 3 HOH A 232 632 193 HOH HOH . C 3 HOH A 233 633 100 HOH HOH . C 3 HOH A 234 634 121 HOH HOH . C 3 HOH A 235 635 124 HOH HOH . C 3 HOH A 236 636 263 HOH HOH . C 3 HOH A 237 637 177 HOH HOH . C 3 HOH A 238 638 264 HOH HOH . C 3 HOH A 239 639 213 HOH HOH . C 3 HOH A 240 640 125 HOH HOH . C 3 HOH A 241 641 146 HOH HOH . C 3 HOH A 242 642 53 HOH HOH . C 3 HOH A 243 643 196 HOH HOH . C 3 HOH A 244 644 280 HOH HOH . C 3 HOH A 245 645 279 HOH HOH . C 3 HOH A 246 646 164 HOH HOH . C 3 HOH A 247 647 172 HOH HOH . C 3 HOH A 248 648 175 HOH HOH . C 3 HOH A 249 649 165 HOH HOH . C 3 HOH A 250 650 288 HOH HOH . C 3 HOH A 251 651 238 HOH HOH . C 3 HOH A 252 652 206 HOH HOH . C 3 HOH A 253 653 270 HOH HOH . C 3 HOH A 254 654 49 HOH HOH . C 3 HOH A 255 655 144 HOH HOH . C 3 HOH A 256 656 240 HOH HOH . C 3 HOH A 257 657 88 HOH HOH . C 3 HOH A 258 658 194 HOH HOH . C 3 HOH A 259 659 232 HOH HOH . C 3 HOH A 260 660 178 HOH HOH . C 3 HOH A 261 661 187 HOH HOH . C 3 HOH A 262 662 199 HOH HOH . C 3 HOH A 263 663 188 HOH HOH . C 3 HOH A 264 664 96 HOH HOH . C 3 HOH A 265 665 109 HOH HOH . C 3 HOH A 266 666 143 HOH HOH . C 3 HOH A 267 667 173 HOH HOH . C 3 HOH A 268 668 215 HOH HOH . C 3 HOH A 269 669 233 HOH HOH . C 3 HOH A 270 670 91 HOH HOH . C 3 HOH A 271 671 211 HOH HOH . C 3 HOH A 272 672 70 HOH HOH . C 3 HOH A 273 673 101 HOH HOH . C 3 HOH A 274 674 151 HOH HOH . C 3 HOH A 275 675 128 HOH HOH . C 3 HOH A 276 676 210 HOH HOH . C 3 HOH A 277 677 272 HOH HOH . C 3 HOH A 278 678 104 HOH HOH . C 3 HOH A 279 679 221 HOH HOH . C 3 HOH A 280 680 224 HOH HOH . C 3 HOH A 281 681 292 HOH HOH . C 3 HOH A 282 682 274 HOH HOH . C 3 HOH A 283 683 147 HOH HOH . C 3 HOH A 284 684 190 HOH HOH . C 3 HOH A 285 685 186 HOH HOH . C 3 HOH A 286 686 97 HOH HOH . C 3 HOH A 287 687 244 HOH HOH . C 3 HOH A 288 688 142 HOH HOH . C 3 HOH A 289 689 271 HOH HOH . C 3 HOH A 290 690 223 HOH HOH . C 3 HOH A 291 691 160 HOH HOH . C 3 HOH A 292 692 273 HOH HOH . C 3 HOH A 293 693 174 HOH HOH . C 3 HOH A 294 694 281 HOH HOH . C 3 HOH A 295 695 234 HOH HOH . C 3 HOH A 296 696 237 HOH HOH . C 3 HOH A 297 697 235 HOH HOH . C 3 HOH A 298 698 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HGW . . . B 2 0.738 -3.624 -28.691 1 25.25 ? C4 HGW 301 A 1 HETATM 2 N N1 HGW . . . B 2 1.075 -6.326 -28.926 1 33.21 ? N1 HGW 301 A 1 HETATM 3 N N2 HGW . . . B 2 1.68 -4.143 -29.555 1 18.76 ? N2 HGW 301 A 1 HETATM 4 C C3 HGW . . . B 2 1.834 -5.474 -29.602 1 20.64 ? C3 HGW 301 A 1 HETATM 5 I I1 HGW . . . B 2 -1.459 -3.716 -26.528 1 29.83 ? I1 HGW 301 A 1 HETATM 6 C C1 HGW . . . B 2 -0.029 -4.456 -27.888 1 27.67 ? C1 HGW 301 A 1 HETATM 7 C C2 HGW . . . B 2 0.163 -5.818 -28.063 1 28.76 ? C2 HGW 301 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #