data_6Q53 # _model_server_result.job_id 2ZakPnTSN0HpQZdx9lqFiQ _model_server_result.datetime_utc '2024-11-14 12:31:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 6Q53 # _exptl.entry_id 6Q53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q53 _cell.length_a 177.24 _cell.length_b 177.24 _cell.length_c 177.24 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 C OD1 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc4 C OD2 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n n ND C4D BCL sing 141 n n C1D C2D BCL sing 142 n n C2D C3D BCL doub 143 n n C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n n C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 6Q53 _atom_sites.fract_transf_matrix[1][1] 0.005642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BCL A 1 101 62 BCL BCL . F 3 BCL A 1 102 63 BCL BCL . G 4 LYC A 1 103 102 LYC LYC . H 3 BCL B 1 101 59 BCL BCL . I 5 DET B 1 102 78 DET DET . J 3 BCL D 1 101 65 BCL BCL . K 3 BCL D 1 102 66 BCL BCL . L 4 LYC E 1 101 97 LYC LYC . M 3 BCL E 1 102 59 BCL BCL . N 5 DET E 1 103 77 DET DET . O 5 DET E 1 104 78 DET DET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . J 3 17.204 15.825 -69.305 1 77.93 ? MG BCL 101 D 1 HETATM 2 C CHA BCL . . . J 3 16.057 17.612 -66.601 1 76.98 ? CHA BCL 101 D 1 HETATM 3 C CHB BCL . . . J 3 17.923 13.259 -67.213 1 80.97 ? CHB BCL 101 D 1 HETATM 4 C CHC BCL . . . J 3 17.726 13.824 -72.006 1 73.83 ? CHC BCL 101 D 1 HETATM 5 C CHD BCL . . . J 3 15.731 18.156 -71.409 1 81.56 ? CHD BCL 101 D 1 HETATM 6 N NA BCL . . . J 3 16.953 15.498 -67.183 1 80.75 ? NA BCL 101 D 1 HETATM 7 C C1A BCL . . . J 3 16.602 16.425 -66.216 1 77.83 ? C1A BCL 101 D 1 HETATM 8 C C2A BCL . . . J 3 16.72 15.863 -64.849 1 77.92 ? C2A BCL 101 D 1 HETATM 9 C C3A BCL . . . J 3 17.504 14.559 -65.069 1 75.06 ? C3A BCL 101 D 1 HETATM 10 C C4A BCL . . . J 3 17.467 14.381 -66.546 1 81.31 ? C4A BCL 101 D 1 HETATM 11 C CMA BCL . . . J 3 18.946 14.657 -64.611 1 70.17 ? CMA BCL 101 D 1 HETATM 12 C CAA BCL . . . J 3 15.371 15.612 -64.175 1 77.76 ? CAA BCL 101 D 1 HETATM 13 C CBA BCL . . . J 3 15.697 15.247 -62.727 1 80.64 ? CBA BCL 101 D 1 HETATM 14 C CGA BCL . . . J 3 14.57 14.834 -61.854 1 81.31 ? CGA BCL 101 D 1 HETATM 15 O O1A BCL . . . J 3 14.19 13.738 -61.792 1 79.94 ? O1A BCL 101 D 1 HETATM 16 O O2A BCL . . . J 3 14.007 15.785 -61.085 1 81.56 ? O2A BCL 101 D 1 HETATM 17 N NB BCL . . . J 3 17.682 13.83 -69.581 1 74.98 ? NB BCL 101 D 1 HETATM 18 C C1B BCL . . . J 3 18.028 12.942 -68.575 1 77.45 ? C1B BCL 101 D 1 HETATM 19 C C2B BCL . . . J 3 18.519 11.745 -69.112 1 76.68 ? C2B BCL 101 D 1 HETATM 20 C C3B BCL . . . J 3 18.449 11.837 -70.517 1 77.64 ? C3B BCL 101 D 1 HETATM 21 C C4B BCL . . . J 3 17.957 13.2 -70.767 1 76.75 ? C4B BCL 101 D 1 HETATM 22 C CMB BCL . . . J 3 19.019 10.629 -68.222 1 77.01 ? CMB BCL 101 D 1 HETATM 23 C CAB BCL . . . J 3 18.754 10.838 -71.565 1 79.55 ? CAB BCL 101 D 1 HETATM 24 O OBB BCL . . . J 3 18.76 11.102 -72.784 1 80.51 ? OBB BCL 101 D 1 HETATM 25 C CBB BCL . . . J 3 19.08 9.398 -71.235 1 81.42 ? CBB BCL 101 D 1 HETATM 26 N NC BCL . . . J 3 16.73 15.957 -71.363 1 80.62 ? NC BCL 101 D 1 HETATM 27 C C1C BCL . . . J 3 17.22 15.091 -72.311 1 75.16 ? C1C BCL 101 D 1 HETATM 28 C C2C BCL . . . J 3 17.1 15.636 -73.67 1 71.02 ? C2C BCL 101 D 1 HETATM 29 C C3C BCL . . . J 3 16.033 16.701 -73.453 1 75.27 ? C3C BCL 101 D 1 HETATM 30 C C4C BCL . . . J 3 16.312 17.078 -72.037 1 78.95 ? C4C BCL 101 D 1 HETATM 31 C CMC BCL . . . J 3 18.43 16.177 -74.117 1 75.01 ? CMC BCL 101 D 1 HETATM 32 C CAC BCL . . . J 3 14.587 16.166 -73.499 1 76.48 ? CAC BCL 101 D 1 HETATM 33 C CBC BCL . . . J 3 14.175 15.538 -74.794 1 80.45 ? CBC BCL 101 D 1 HETATM 34 N ND BCL . . . J 3 16.061 17.473 -69.11 1 76.24 ? ND BCL 101 D 1 HETATM 35 C C1D BCL . . . J 3 15.618 18.412 -70.026 1 78.74 ? C1D BCL 101 D 1 HETATM 36 C C2D BCL . . . J 3 15.119 19.551 -69.391 1 79.43 ? C2D BCL 101 D 1 HETATM 37 C C3D BCL . . . J 3 15.254 19.307 -68.04 1 81.28 ? C3D BCL 101 D 1 HETATM 38 C C4D BCL . . . J 3 15.825 18.057 -67.905 1 80.63 ? C4D BCL 101 D 1 HETATM 39 C CMD BCL . . . J 3 14.569 20.759 -70.077 1 83.6 ? CMD BCL 101 D 1 HETATM 40 C CAD BCL . . . J 3 15.048 19.801 -66.741 1 89.9 ? CAD BCL 101 D 1 HETATM 41 O OBD BCL . . . J 3 14.659 20.915 -66.356 1 84.67 ? OBD BCL 101 D 1 HETATM 42 C CBD BCL . . . J 3 15.396 18.674 -65.74 1 77.87 ? CBD BCL 101 D 1 HETATM 43 C CGD BCL . . . J 3 16.248 19.177 -64.676 1 80.26 ? CGD BCL 101 D 1 HETATM 44 O O1D BCL . . . J 3 16.07 19.024 -63.494 1 84.91 ? O1D BCL 101 D 1 HETATM 45 O O2D BCL . . . J 3 17.289 19.849 -65.085 1 84.07 ? O2D BCL 101 D 1 HETATM 46 C CED BCL . . . J 3 18.1 20.304 -63.965 1 83.78 ? CED BCL 101 D 1 HETATM 47 C C1 BCL . . . J 3 12.901 15.269 -60.265 1 79.13 ? C1 BCL 101 D 1 HETATM 48 C C2 BCL . . . J 3 12.901 16.079 -58.996 1 77.74 ? C2 BCL 101 D 1 HETATM 49 C C3 BCL . . . J 3 13.366 15.667 -57.841 1 80.13 ? C3 BCL 101 D 1 HETATM 50 C C4 BCL . . . J 3 13.352 16.506 -56.585 1 84.04 ? C4 BCL 101 D 1 HETATM 51 C C5 BCL . . . J 3 13.989 14.279 -57.604 1 71.64 ? C5 BCL 101 D 1 HETATM 52 C C6 BCL . . . J 3 15.353 14.295 -56.899 1 68.16 ? C6 BCL 101 D 1 HETATM 53 C C7 BCL . . . J 3 16.448 14.851 -57.801 1 73.06 ? C7 BCL 101 D 1 HETATM 54 C C8 BCL . . . J 3 17.681 15.364 -57.084 1 70.68 ? C8 BCL 101 D 1 HETATM 55 C C9 BCL . . . J 3 18.266 14.227 -56.228 1 70.67 ? C9 BCL 101 D 1 HETATM 56 C C10 BCL . . . J 3 17.35 16.625 -56.253 1 66.93 ? C10 BCL 101 D 1 HETATM 57 C C11 BCL . . . J 3 18.377 17.347 -55.33 1 78.51 ? C11 BCL 101 D 1 HETATM 58 C C12 BCL . . . J 3 19.73 17.817 -55.935 1 79.03 ? C12 BCL 101 D 1 HETATM 59 C C13 BCL . . . J 3 20.355 19.087 -55.337 1 71.91 ? C13 BCL 101 D 1 HETATM 60 C C14 BCL . . . J 3 19.4 20.278 -55.373 1 68.34 ? C14 BCL 101 D 1 HETATM 61 C C15 BCL . . . J 3 21.537 19.334 -56.277 1 72.74 ? C15 BCL 101 D 1 HETATM 62 C C16 BCL . . . J 3 22.743 18.382 -56.167 1 77.1 ? C16 BCL 101 D 1 HETATM 63 C C17 BCL . . . J 3 23.523 18.347 -57.483 1 77.59 ? C17 BCL 101 D 1 HETATM 64 C C18 BCL . . . J 3 24.939 18.811 -57.434 1 82.34 ? C18 BCL 101 D 1 HETATM 65 C C19 BCL . . . J 3 24.91 20.159 -56.685 1 74.47 ? C19 BCL 101 D 1 HETATM 66 C C20 BCL . . . J 3 25.508 18.942 -58.857 1 93.43 ? C20 BCL 101 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 66 #