data_6Q53
#
_model_server_result.job_id            Op3YTxKKj39RG-6TxW3rwQ 
_model_server_result.datetime_utc      '2024-11-29 08:12:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":101}' 
#
_entry.id    6Q53 
#
_exptl.entry_id    6Q53 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              536.873 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LYCOPENE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q53 
_cell.length_a            177.24 
_cell.length_b            177.24 
_cell.length_c            177.24 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q53 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        207 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc3 C OD1 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? 
metalc ? metalc4 C OD2 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
#
_chem_comp.formula           'C40 H56' 
_chem_comp.formula_weight    536.873 
_chem_comp.id                LYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              LYCOPENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LYC sing 370 n n 
C1 H11A LYC sing 371 n n 
C1 H12 LYC sing 372 n n 
C1 H13 LYC sing 373 n n 
C2 C3 LYC sing 374 n n 
C2 C4 LYC doub 375 n n 
C3 H31 LYC sing 376 n n 
C3 H32 LYC sing 377 n n 
C3 H33 LYC sing 378 n n 
C4 C5 LYC sing 379 n n 
C4 H4 LYC sing 380 n n 
C5 C6 LYC sing 381 n n 
C5 H51 LYC sing 382 n n 
C5 H52 LYC sing 383 n n 
C6 C7 LYC sing 384 n n 
C6 H61 LYC sing 385 n n 
C6 H62 LYC sing 386 n n 
C7 C8 LYC sing 387 n n 
C7 C9 LYC doub 388 e n 
C8 H81 LYC sing 389 n n 
C8 H82 LYC sing 390 n n 
C8 H83 LYC sing 391 n n 
C9 C10 LYC sing 392 n n 
C9 H9 LYC sing 393 n n 
C10 C11 LYC doub 394 e n 
C10 H10 LYC sing 395 n n 
C11 C12 LYC sing 396 n n 
C11 H11 LYC sing 397 n n 
C12 C13 LYC sing 398 n n 
C12 C14 LYC doub 399 e n 
C13 H131 LYC sing 400 n n 
C13 H132 LYC sing 401 n n 
C13 H133 LYC sing 402 n n 
C14 C15 LYC sing 403 n n 
C14 H14 LYC sing 404 n n 
C15 C16 LYC doub 405 e n 
C15 H15 LYC sing 406 n n 
C16 C17 LYC sing 407 n n 
C16 H16 LYC sing 408 n n 
C17 C18 LYC sing 409 n n 
C17 C19 LYC doub 410 e n 
C18 H181 LYC sing 411 n n 
C18 H182 LYC sing 412 n n 
C18 H183 LYC sing 413 n n 
C19 C20 LYC sing 414 n n 
C19 H19 LYC sing 415 n n 
C20 C21 LYC doub 416 e n 
C20 H20 LYC sing 417 n n 
C21 C50 LYC sing 418 n n 
C21 H21 LYC sing 419 n n 
C50 C51 LYC doub 420 e n 
C50 H50 LYC sing 421 n n 
C51 C52 LYC sing 422 n n 
C51 C53 LYC sing 423 n n 
C52 H521 LYC sing 424 n n 
C52 H522 LYC sing 425 n n 
C52 H523 LYC sing 426 n n 
C53 C54 LYC doub 427 e n 
C53 H53 LYC sing 428 n n 
C54 C55 LYC sing 429 n n 
C54 H54 LYC sing 430 n n 
C55 C56 LYC doub 431 e n 
C55 H55 LYC sing 432 n n 
C56 C57 LYC sing 433 n n 
C56 C58 LYC sing 434 n n 
C57 H571 LYC sing 435 n n 
C57 H572 LYC sing 436 n n 
C57 H573 LYC sing 437 n n 
C58 C59 LYC doub 438 e n 
C58 H58 LYC sing 439 n n 
C59 C60 LYC sing 440 n n 
C59 H59 LYC sing 441 n n 
C60 C61 LYC doub 442 e n 
C60 H60 LYC sing 443 n n 
C61 C62 LYC sing 444 n n 
C61 C63 LYC sing 445 n n 
C62 H621 LYC sing 446 n n 
C62 H622 LYC sing 447 n n 
C62 H623 LYC sing 448 n n 
C63 C64 LYC sing 449 n n 
C63 H631 LYC sing 450 n n 
C63 H632 LYC sing 451 n n 
C64 C65 LYC sing 452 n n 
C64 H641 LYC sing 453 n n 
C64 H642 LYC sing 454 n n 
C65 C66 LYC doub 455 n n 
C65 H65 LYC sing 456 n n 
C66 C67 LYC sing 457 n n 
C66 C68 LYC sing 458 n n 
C67 H671 LYC sing 459 n n 
C67 H672 LYC sing 460 n n 
C67 H673 LYC sing 461 n n 
C68 H681 LYC sing 462 n n 
C68 H682 LYC sing 463 n n 
C68 H683 LYC sing 464 n n 
#
_atom_sites.entry_id                     6Q53 
_atom_sites.fract_transf_matrix[1][1]    0.005642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005642 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 BCL A 1 101 62 BCL BCL . 
F 3 BCL A 1 102 63 BCL BCL . 
G 4 LYC A 1 103 102 LYC LYC . 
H 3 BCL B 1 101 59 BCL BCL . 
I 5 DET B 1 102 78 DET DET . 
J 3 BCL D 1 101 65 BCL BCL . 
K 3 BCL D 1 102 66 BCL BCL . 
L 4 LYC E 1 101 97 LYC LYC . 
M 3 BCL E 1 102 59 BCL BCL . 
N 5 DET E 1 103 77 DET DET . 
O 5 DET E 1 104 78 DET DET . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LYC . . . L 4 15.132 18.941 -38.382 1 69.59 ? C1 LYC 101 E 1 
HETATM 2 C C2 LYC . . . L 4 16.143 19.382 -39.386 1 62.38 ? C2 LYC 101 E 1 
HETATM 3 C C3 LYC . . . L 4 17.307 20.24 -38.996 1 54.89 ? C3 LYC 101 E 1 
HETATM 4 C C4 LYC . . . L 4 15.961 18.966 -40.63 1 65.52 ? C4 LYC 101 E 1 
HETATM 5 C C5 LYC . . . L 4 16.884 19.338 -41.76 1 74.64 ? C5 LYC 101 E 1 
HETATM 6 C C6 LYC . . . L 4 15.962 19.685 -42.936 1 77.83 ? C6 LYC 101 E 1 
HETATM 7 C C7 LYC . . . L 4 16.26 18.965 -44.252 1 73.97 ? C7 LYC 101 E 1 
HETATM 8 C C8 LYC . . . L 4 17.523 18.177 -44.44 1 71.06 ? C8 LYC 101 E 1 
HETATM 9 C C9 LYC . . . L 4 15.364 19.048 -45.256 1 64.46 ? C9 LYC 101 E 1 
HETATM 10 C C10 LYC . . . L 4 15.549 18.429 -46.571 1 61.8 ? C10 LYC 101 E 1 
HETATM 11 C C11 LYC . . . L 4 14.857 18.991 -47.572 1 66 ? C11 LYC 101 E 1 
HETATM 12 C C12 LYC . . . L 4 14.838 18.653 -49.024 1 60.34 ? C12 LYC 101 E 1 
HETATM 13 C C13 LYC . . . L 4 15.811 17.718 -49.671 1 56.72 ? C13 LYC 101 E 1 
HETATM 14 C C14 LYC . . . L 4 13.948 19.283 -49.799 1 60.09 ? C14 LYC 101 E 1 
HETATM 15 C C15 LYC . . . L 4 13.856 19.042 -51.236 1 64.25 ? C15 LYC 101 E 1 
HETATM 16 C C16 LYC . . . L 4 13.228 19.941 -52 1 66.03 ? C16 LYC 101 E 1 
HETATM 17 C C17 LYC . . . L 4 13.049 19.791 -53.461 1 65.59 ? C17 LYC 101 E 1 
HETATM 18 C C18 LYC . . . L 4 14.095 19.189 -54.341 1 66.12 ? C18 LYC 101 E 1 
HETATM 19 C C19 LYC . . . L 4 11.908 20.231 -53.997 1 73.01 ? C19 LYC 101 E 1 
HETATM 20 C C20 LYC . . . L 4 11.576 20.115 -55.416 1 78.79 ? C20 LYC 101 E 1 
HETATM 21 C C21 LYC . . . L 4 10.298 20.356 -55.707 1 84.43 ? C21 LYC 101 E 1 
HETATM 22 C C50 LYC . . . L 4 9.717 20.242 -57.036 1 88.28 ? C50 LYC 101 E 1 
HETATM 23 C C51 LYC . . . L 4 8.459 20.64 -57.285 1 88.66 ? C51 LYC 101 E 1 
HETATM 24 C C52 LYC . . . L 4 7.622 21.282 -56.22 1 85.62 ? C52 LYC 101 E 1 
HETATM 25 C C53 LYC . . . L 4 7.929 20.457 -58.65 1 88.4 ? C53 LYC 101 E 1 
HETATM 26 C C54 LYC . . . L 4 6.63 20.39 -58.96 1 87.48 ? C54 LYC 101 E 1 
HETATM 27 C C55 LYC . . . L 4 6.308 20.192 -60.383 1 84.95 ? C55 LYC 101 E 1 
HETATM 28 C C56 LYC . . . L 4 5.086 20.206 -60.963 1 75.79 ? C56 LYC 101 E 1 
HETATM 29 C C57 LYC . . . L 4 3.851 20.482 -60.16 1 77.64 ? C57 LYC 101 E 1 
HETATM 30 C C58 LYC . . . L 4 5.004 20.001 -62.433 1 75.16 ? C58 LYC 101 E 1 
HETATM 31 C C59 LYC . . . L 4 4.007 19.427 -63.129 1 81.76 ? C59 LYC 101 E 1 
HETATM 32 C C60 LYC . . . L 4 4.095 19.335 -64.612 1 85.01 ? C60 LYC 101 E 1 
HETATM 33 C C61 LYC . . . L 4 3.195 18.796 -65.497 1 79.26 ? C61 LYC 101 E 1 
HETATM 34 C C62 LYC . . . L 4 1.892 18.166 -65.068 1 71.23 ? C62 LYC 101 E 1 
HETATM 35 C C63 LYC . . . L 4 3.508 18.831 -66.988 1 77.75 ? C63 LYC 101 E 1 
HETATM 36 C C64 LYC . . . L 4 3.24 17.508 -67.72 1 85.09 ? C64 LYC 101 E 1 
HETATM 37 C C65 LYC . . . L 4 3.239 17.626 -69.244 1 81.65 ? C65 LYC 101 E 1 
HETATM 38 C C66 LYC . . . L 4 3.243 16.562 -70.082 1 70.89 ? C66 LYC 101 E 1 
HETATM 39 C C67 LYC . . . L 4 3.24 16.749 -71.556 1 73.26 ? C67 LYC 101 E 1 
HETATM 40 C C68 LYC . . . L 4 3.276 15.154 -69.599 1 69.54 ? C68 LYC 101 E 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           40 
#