data_6Q53
#
_model_server_result.job_id            AhW-gEG1W2YziRkjCK7j5Q 
_model_server_result.datetime_utc      '2024-11-14 12:51:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":102}' 
#
_entry.id    6Q53 
#
_exptl.entry_id    6Q53 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              911.504 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BACTERIOCHLOROPHYLL A' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q53 
_cell.length_a            177.24 
_cell.length_b            177.24 
_cell.length_c            177.24 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q53 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        207 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc3 C OD1 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? 
metalc ? metalc4 C OD2 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
#
_chem_comp.formula           'C55 H74 Mg N4 O6' 
_chem_comp.formula_weight    911.504 
_chem_comp.id                BCL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BACTERIOCHLOROPHYLL A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MG NA BCL sing 70 n n 
MG NB BCL sing 71 n n 
MG NC BCL sing 72 n n 
MG ND BCL sing 73 n n 
CHA C1A BCL sing 74 n n 
CHA C4D BCL doub 75 n n 
CHA CBD BCL sing 76 n n 
CHB C4A BCL doub 77 n n 
CHB C1B BCL sing 78 n n 
CHB HHB BCL sing 79 n n 
CHC C4B BCL sing 80 n n 
CHC C1C BCL doub 81 n n 
CHC HHC BCL sing 82 n n 
CHD C4C BCL sing 83 n n 
CHD C1D BCL doub 84 n n 
CHD HHD BCL sing 85 n n 
NA C1A BCL doub 86 n n 
NA C4A BCL sing 87 n n 
C1A C2A BCL sing 88 n n 
C2A C3A BCL sing 89 n n 
C2A CAA BCL sing 90 n n 
C2A H2A BCL sing 91 n n 
C3A C4A BCL sing 92 n n 
C3A CMA BCL sing 93 n n 
C3A H3A BCL sing 94 n n 
CMA HMA1 BCL sing 95 n n 
CMA HMA2 BCL sing 96 n n 
CMA HMA3 BCL sing 97 n n 
CAA CBA BCL sing 98 n n 
CAA HAA1 BCL sing 99 n n 
CAA HAA2 BCL sing 100 n n 
CBA CGA BCL sing 101 n n 
CBA HBA1 BCL sing 102 n n 
CBA HBA2 BCL sing 103 n n 
CGA O1A BCL doub 104 n n 
CGA O2A BCL sing 105 n n 
O2A C1 BCL sing 106 n n 
NB C1B BCL sing 107 n y 
NB C4B BCL sing 108 n y 
C1B C2B BCL doub 109 n y 
C2B C3B BCL sing 110 n y 
C2B CMB BCL sing 111 n n 
C3B C4B BCL doub 112 n y 
C3B CAB BCL sing 113 n n 
CMB HMB1 BCL sing 114 n n 
CMB HMB2 BCL sing 115 n n 
CMB HMB3 BCL sing 116 n n 
CAB OBB BCL doub 117 n n 
CAB CBB BCL sing 118 n n 
CBB HBB1 BCL sing 119 n n 
CBB HBB2 BCL sing 120 n n 
CBB HBB3 BCL sing 121 n n 
NC C1C BCL sing 122 n n 
NC C4C BCL doub 123 n n 
C1C C2C BCL sing 124 n n 
C2C C3C BCL sing 125 n n 
C2C CMC BCL sing 126 n n 
C2C H2C BCL sing 127 n n 
C3C C4C BCL sing 128 n n 
C3C CAC BCL sing 129 n n 
C3C H3C BCL sing 130 n n 
CMC HMC1 BCL sing 131 n n 
CMC HMC2 BCL sing 132 n n 
CMC HMC3 BCL sing 133 n n 
CAC CBC BCL sing 134 n n 
CAC HAC1 BCL sing 135 n n 
CAC HAC2 BCL sing 136 n n 
CBC HBC1 BCL sing 137 n n 
CBC HBC2 BCL sing 138 n n 
CBC HBC3 BCL sing 139 n n 
ND C1D BCL sing 140 n n 
ND C4D BCL sing 141 n n 
C1D C2D BCL sing 142 n n 
C2D C3D BCL doub 143 n n 
C2D CMD BCL sing 144 n n 
C3D C4D BCL sing 145 n n 
C3D CAD BCL sing 146 n n 
CMD HMD1 BCL sing 147 n n 
CMD HMD2 BCL sing 148 n n 
CMD HMD3 BCL sing 149 n n 
CAD OBD BCL doub 150 n n 
CAD CBD BCL sing 151 n n 
CBD CGD BCL sing 152 n n 
CBD HBD BCL sing 153 n n 
CGD O1D BCL doub 154 n n 
CGD O2D BCL sing 155 n n 
O2D CED BCL sing 156 n n 
CED HED1 BCL sing 157 n n 
CED HED2 BCL sing 158 n n 
CED HED3 BCL sing 159 n n 
C1 C2 BCL sing 160 n n 
C1 H11 BCL sing 161 n n 
C1 H12 BCL sing 162 n n 
C2 C3 BCL doub 163 e n 
C2 H2 BCL sing 164 n n 
C3 C4 BCL sing 165 n n 
C3 C5 BCL sing 166 n n 
C4 H41 BCL sing 167 n n 
C4 H42 BCL sing 168 n n 
C4 H43 BCL sing 169 n n 
C5 C6 BCL sing 170 n n 
C5 H51 BCL sing 171 n n 
C5 H52 BCL sing 172 n n 
C6 C7 BCL sing 173 n n 
C6 H61 BCL sing 174 n n 
C6 H62 BCL sing 175 n n 
C7 C8 BCL sing 176 n n 
C7 H71 BCL sing 177 n n 
C7 H72 BCL sing 178 n n 
C8 C9 BCL sing 179 n n 
C8 C10 BCL sing 180 n n 
C8 H8 BCL sing 181 n n 
C9 H91 BCL sing 182 n n 
C9 H92 BCL sing 183 n n 
C9 H93 BCL sing 184 n n 
C10 C11 BCL sing 185 n n 
C10 H101 BCL sing 186 n n 
C10 H102 BCL sing 187 n n 
C11 C12 BCL sing 188 n n 
C11 H111 BCL sing 189 n n 
C11 H112 BCL sing 190 n n 
C12 C13 BCL sing 191 n n 
C12 H121 BCL sing 192 n n 
C12 H122 BCL sing 193 n n 
C13 C14 BCL sing 194 n n 
C13 C15 BCL sing 195 n n 
C13 H13 BCL sing 196 n n 
C14 H141 BCL sing 197 n n 
C14 H142 BCL sing 198 n n 
C14 H143 BCL sing 199 n n 
C15 C16 BCL sing 200 n n 
C15 H151 BCL sing 201 n n 
C15 H152 BCL sing 202 n n 
C16 C17 BCL sing 203 n n 
C16 H161 BCL sing 204 n n 
C16 H162 BCL sing 205 n n 
C17 C18 BCL sing 206 n n 
C17 H171 BCL sing 207 n n 
C17 H172 BCL sing 208 n n 
C18 C19 BCL sing 209 n n 
C18 C20 BCL sing 210 n n 
C18 H18 BCL sing 211 n n 
C19 H191 BCL sing 212 n n 
C19 H192 BCL sing 213 n n 
C19 H193 BCL sing 214 n n 
C20 H201 BCL sing 215 n n 
C20 H202 BCL sing 216 n n 
C20 H203 BCL sing 217 n n 
#
_atom_sites.entry_id                     6Q53 
_atom_sites.fract_transf_matrix[1][1]    0.005642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005642 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 BCL A 1 101 62 BCL BCL . 
F 3 BCL A 1 102 63 BCL BCL . 
G 4 LYC A 1 103 102 LYC LYC . 
H 3 BCL B 1 101 59 BCL BCL . 
I 5 DET B 1 102 78 DET DET . 
J 3 BCL D 1 101 65 BCL BCL . 
K 3 BCL D 1 102 66 BCL BCL . 
L 4 LYC E 1 101 97 LYC LYC . 
M 3 BCL E 1 102 59 BCL BCL . 
N 5 DET E 1 103 77 DET DET . 
O 5 DET E 1 104 78 DET DET . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MG MG BCL . . . K 3 4.636 28.63 -51.314 1 57.53 ? MG BCL 102 D 1 
HETATM 2 C CHA BCL . . . K 3 7.891 28.16 -52.282 1 67.05 ? CHA BCL 102 D 1 
HETATM 3 C CHB BCL . . . K 3 4.5 31.285 -53.37 1 69.69 ? CHB BCL 102 D 1 
HETATM 4 C CHC BCL . . . K 3 1.277 28.545 -51.023 1 67.2 ? CHC BCL 102 D 1 
HETATM 5 C CHD BCL . . . K 3 4.792 25.663 -49.532 1 63.92 ? CHD BCL 102 D 1 
HETATM 6 N NA BCL . . . K 3 6.053 29.582 -52.639 1 69.91 ? NA BCL 102 D 1 
HETATM 7 C C1A BCL . . . K 3 7.309 29.145 -53.003 1 71.24 ? C1A BCL 102 D 1 
HETATM 8 C C2A BCL . . . K 3 7.948 30.047 -54.028 1 70 ? C2A BCL 102 D 1 
HETATM 9 C C3A BCL . . . K 3 6.93 31.186 -54.114 1 66.73 ? C3A BCL 102 D 1 
HETATM 10 C C4A BCL . . . K 3 5.703 30.606 -53.49 1 70.29 ? C4A BCL 102 D 1 
HETATM 11 C CMA BCL . . . K 3 7.337 32.314 -53.206 1 62.76 ? CMA BCL 102 D 1 
HETATM 12 C CAA BCL . . . K 3 8.221 29.302 -55.361 1 79.15 ? CAA BCL 102 D 1 
HETATM 13 C CBA BCL . . . K 3 9.266 29.782 -56.425 1 82.86 ? CBA BCL 102 D 1 
HETATM 14 C CGA BCL . . . K 3 8.559 30.034 -57.733 1 101.24 ? CGA BCL 102 D 1 
HETATM 15 O O1A BCL . . . K 3 7.356 29.926 -57.854 1 105.59 ? O1A BCL 102 D 1 
HETATM 16 O O2A BCL . . . K 3 9.285 30.42 -58.877 1 110.51 ? O2A BCL 102 D 1 
HETATM 17 N NB BCL . . . K 3 3.1 29.69 -52.12 1 67.7 ? NB BCL 102 D 1 
HETATM 18 C C1B BCL . . . K 3 3.261 30.881 -52.816 1 71.6 ? C1B BCL 102 D 1 
HETATM 19 C C2B BCL . . . K 3 2.023 31.523 -52.967 1 67.84 ? C2B BCL 102 D 1 
HETATM 20 C C3B BCL . . . K 3 1.055 30.745 -52.321 1 69.49 ? C3B BCL 102 D 1 
HETATM 21 C C4B BCL . . . K 3 1.788 29.616 -51.765 1 68.74 ? C4B BCL 102 D 1 
HETATM 22 C CMB BCL . . . K 3 1.874 32.801 -53.718 1 65.76 ? CMB BCL 102 D 1 
HETATM 23 C CAB BCL . . . K 3 -0.385 30.907 -52.201 1 64.47 ? CAB BCL 102 D 1 
HETATM 24 O OBB BCL . . . K 3 -1.165 29.953 -52.199 1 63.21 ? OBB BCL 102 D 1 
HETATM 25 C CBB BCL . . . K 3 -1.024 32.252 -52.065 1 69.93 ? CBB BCL 102 D 1 
HETATM 26 N NC BCL . . . K 3 3.253 27.265 -50.477 1 69.42 ? NC BCL 102 D 1 
HETATM 27 C C1C BCL . . . K 3 1.923 27.521 -50.322 1 68.58 ? C1C BCL 102 D 1 
HETATM 28 C C2C BCL . . . K 3 1.213 26.436 -49.587 1 62.96 ? C2C BCL 102 D 1 
HETATM 29 C C3C BCL . . . K 3 2.31 25.39 -49.422 1 59.5 ? C3C BCL 102 D 1 
HETATM 30 C C4C BCL . . . K 3 3.538 26.197 -49.66 1 65.08 ? C4C BCL 102 D 1 
HETATM 31 C CMC BCL . . . K 3 0.671 26.903 -48.271 1 64.26 ? CMC BCL 102 D 1 
HETATM 32 C CAC BCL . . . K 3 2.226 24.196 -50.396 1 63.68 ? CAC BCL 102 D 1 
HETATM 33 C CBC BCL . . . K 3 1.924 24.572 -51.827 1 66.01 ? CBC BCL 102 D 1 
HETATM 34 N ND BCL . . . K 3 5.998 27.195 -50.985 1 64.89 ? ND BCL 102 D 1 
HETATM 35 C C1D BCL . . . K 3 5.988 26.069 -50.174 1 66.44 ? C1D BCL 102 D 1 
HETATM 36 C C2D BCL . . . K 3 7.244 25.454 -50.141 1 67.86 ? C2D BCL 102 D 1 
HETATM 37 C C3D BCL . . . K 3 8.06 26.242 -50.926 1 68.38 ? C3D BCL 102 D 1 
HETATM 38 C C4D BCL . . . K 3 7.276 27.271 -51.424 1 65.67 ? C4D BCL 102 D 1 
HETATM 39 C CMD BCL . . . K 3 7.575 24.198 -49.403 1 66.5 ? CMD BCL 102 D 1 
HETATM 40 C CAD BCL . . . K 3 9.316 26.341 -51.562 1 69.6 ? CAD BCL 102 D 1 
HETATM 41 O OBD BCL . . . K 3 10.338 25.601 -51.492 1 66.66 ? OBD BCL 102 D 1 
HETATM 42 C CBD BCL . . . K 3 9.291 27.602 -52.453 1 68.45 ? CBD BCL 102 D 1 
HETATM 43 C CGD BCL . . . K 3 10.295 28.553 -52.006 1 68.64 ? CGD BCL 102 D 1 
HETATM 44 O O1D BCL . . . K 3 10.334 29.018 -50.889 1 71.8 ? O1D BCL 102 D 1 
HETATM 45 O O2D BCL . . . K 3 11.167 28.866 -52.941 1 68.35 ? O2D BCL 102 D 1 
HETATM 46 C CED BCL . . . K 3 12.217 29.761 -52.561 1 67.33 ? CED BCL 102 D 1 
HETATM 47 C C1 BCL . . . K 3 8.402 30.676 -60.056 1 103.81 ? C1 BCL 102 D 1 
HETATM 48 C C2 BCL . . . K 3 9.22 30.814 -61.377 1 104.54 ? C2 BCL 102 D 1 
HETATM 49 C C3 BCL . . . K 3 10.485 30.879 -61.828 1 107.17 ? C3 BCL 102 D 1 
HETATM 50 C C4 BCL . . . K 3 10.854 31.013 -63.316 1 105.75 ? C4 BCL 102 D 1 
HETATM 51 C C5 BCL . . . K 3 11.711 30.82 -60.891 1 110.06 ? C5 BCL 102 D 1 
HETATM 52 C C6 BCL . . . K 3 13.043 30.173 -61.409 1 99.22 ? C6 BCL 102 D 1 
HETATM 53 C C7 BCL . . . K 3 14.042 29.894 -60.254 1 87.79 ? C7 BCL 102 D 1 
HETATM 54 C C8 BCL . . . K 3 13.858 30.65 -58.901 1 89.56 ? C8 BCL 102 D 1 
HETATM 55 C C9 BCL . . . K 3 13.018 29.92 -57.784 1 78.1 ? C9 BCL 102 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           55 
#