data_6Q53 # _model_server_result.job_id X93EB4b3iQnbiCctf5Xxvg _model_server_result.datetime_utc '2024-11-14 12:52:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":102}' # _entry.id 6Q53 # _exptl.entry_id 6Q53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q53 _cell.length_a 177.24 _cell.length_b 177.24 _cell.length_c 177.24 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 C OD1 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc4 C OD2 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n n ND C4D BCL sing 141 n n C1D C2D BCL sing 142 n n C2D C3D BCL doub 143 n n C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n n C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 6Q53 _atom_sites.fract_transf_matrix[1][1] 0.005642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BCL A 1 101 62 BCL BCL . F 3 BCL A 1 102 63 BCL BCL . G 4 LYC A 1 103 102 LYC LYC . H 3 BCL B 1 101 59 BCL BCL . I 5 DET B 1 102 78 DET DET . J 3 BCL D 1 101 65 BCL BCL . K 3 BCL D 1 102 66 BCL BCL . L 4 LYC E 1 101 97 LYC LYC . M 3 BCL E 1 102 59 BCL BCL . N 5 DET E 1 103 77 DET DET . O 5 DET E 1 104 78 DET DET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . M 3 9.885 21.985 -69.244 1 78.76 ? MG BCL 102 E 1 HETATM 2 C CHA BCL . . . M 3 10.916 20.115 -66.505 1 78.61 ? CHA BCL 102 E 1 HETATM 3 C CHB BCL . . . M 3 7.799 23.692 -67.173 1 83.48 ? CHB BCL 102 E 1 HETATM 4 C CHC BCL . . . M 3 8.586 23.514 -71.927 1 87.18 ? CHC BCL 102 E 1 HETATM 5 C CHD BCL . . . M 3 11.139 19.506 -71.362 1 82.44 ? CHD BCL 102 E 1 HETATM 6 N NA BCL . . . M 3 9.419 21.869 -67.104 1 86.34 ? NA BCL 102 E 1 HETATM 7 C C1A BCL . . . M 3 10.117 21.162 -66.112 1 78.62 ? C1A BCL 102 E 1 HETATM 8 C C2A BCL . . . M 3 9.669 21.556 -64.706 1 74.43 ? C2A BCL 102 E 1 HETATM 9 C C3A BCL . . . M 3 8.628 22.641 -64.976 1 76.76 ? C3A BCL 102 E 1 HETATM 10 C C4A BCL . . . M 3 8.633 22.819 -66.476 1 85.62 ? C4A BCL 102 E 1 HETATM 11 C CMA BCL . . . M 3 7.262 22.181 -64.53 1 84.17 ? CMA BCL 102 E 1 HETATM 12 C CAA BCL . . . M 3 10.763 22.034 -63.696 1 81.28 ? CAA BCL 102 E 1 HETATM 13 C CBA BCL . . . M 3 10.588 22.01 -62.075 1 78.7 ? CBA BCL 102 E 1 HETATM 14 C CGA BCL . . . M 3 9.958 23.126 -61.249 1 80.66 ? CGA BCL 102 E 1 HETATM 15 O O1A BCL . . . M 3 10.529 24.16 -60.613 1 65.49 ? O1A BCL 102 E 1 HETATM 16 O O2A BCL . . . M 3 8.672 22.743 -61.291 1 82.05 ? O2A BCL 102 E 1 HETATM 17 N NB BCL . . . M 3 8.431 23.407 -69.529 1 83.69 ? NB BCL 102 E 1 HETATM 18 C C1B BCL . . . M 3 7.602 23.929 -68.551 1 80.62 ? C1B BCL 102 E 1 HETATM 19 C C2B BCL . . . M 3 6.563 24.657 -69.149 1 81.79 ? C2B BCL 102 E 1 HETATM 20 C C3B BCL . . . M 3 6.769 24.658 -70.54 1 89.19 ? C3B BCL 102 E 1 HETATM 21 C C4B BCL . . . M 3 7.945 23.83 -70.729 1 86.29 ? C4B BCL 102 E 1 HETATM 22 C CMB BCL . . . M 3 5.46 25.291 -68.366 1 79.49 ? CMB BCL 102 E 1 HETATM 23 C CAB BCL . . . M 3 6.022 25.38 -71.611 1 88.88 ? CAB BCL 102 E 1 HETATM 24 O OBB BCL . . . M 3 5.175 24.903 -72.407 1 74.29 ? OBB BCL 102 E 1 HETATM 25 C CBB BCL . . . M 3 6.285 26.85 -71.798 1 99.81 ? CBB BCL 102 E 1 HETATM 26 N NC BCL . . . M 3 9.842 21.554 -71.323 1 81.63 ? NC BCL 102 E 1 HETATM 27 C C1C BCL . . . M 3 9.352 22.406 -72.262 1 83.71 ? C1C BCL 102 E 1 HETATM 28 C C2C BCL . . . M 3 9.799 22.107 -73.636 1 82.43 ? C2C BCL 102 E 1 HETATM 29 C C3C BCL . . . M 3 10.5 20.771 -73.478 1 82.47 ? C3C BCL 102 E 1 HETATM 30 C C4C BCL . . . M 3 10.526 20.568 -71.987 1 82.47 ? C4C BCL 102 E 1 HETATM 31 C CMC BCL . . . M 3 8.667 22.034 -74.604 1 77.87 ? CMC BCL 102 E 1 HETATM 32 C CAC BCL . . . M 3 11.898 20.783 -74.129 1 82.67 ? CAC BCL 102 E 1 HETATM 33 C CBC BCL . . . M 3 11.837 21.026 -75.614 1 86.19 ? CBC BCL 102 E 1 HETATM 34 N ND BCL . . . M 3 10.842 20.211 -69.047 1 84.52 ? ND BCL 102 E 1 HETATM 35 C C1D BCL . . . M 3 11.257 19.252 -69.973 1 80.59 ? C1D BCL 102 E 1 HETATM 36 C C2D BCL . . . M 3 11.756 18.111 -69.341 1 76.58 ? C2D BCL 102 E 1 HETATM 37 C C3D BCL . . . M 3 11.659 18.371 -67.969 1 81.46 ? C3D BCL 102 E 1 HETATM 38 C C4D BCL . . . M 3 11.108 19.64 -67.83 1 82.75 ? C4D BCL 102 E 1 HETATM 39 C CMD BCL . . . M 3 12.265 16.907 -70.047 1 73.42 ? CMD BCL 102 E 1 HETATM 40 C CAD BCL . . . M 3 11.947 17.906 -66.658 1 81.65 ? CAD BCL 102 E 1 HETATM 41 O OBD BCL . . . M 3 12.486 16.843 -66.263 1 81.03 ? OBD BCL 102 E 1 HETATM 42 C CBD BCL . . . M 3 11.471 18.969 -65.64 1 80.64 ? CBD BCL 102 E 1 HETATM 43 C CGD BCL . . . M 3 10.575 18.25 -64.721 1 85.01 ? CGD BCL 102 E 1 HETATM 44 O O1D BCL . . . M 3 9.818 17.355 -65.054 1 82.53 ? O1D BCL 102 E 1 HETATM 45 O O2D BCL . . . M 3 10.654 18.653 -63.458 1 88.67 ? O2D BCL 102 E 1 HETATM 46 C CED BCL . . . M 3 9.863 17.966 -62.446 1 79.59 ? CED BCL 102 E 1 HETATM 47 C C1 BCL . . . M 3 7.382 23.315 -60.79 1 78.09 ? C1 BCL 102 E 1 HETATM 48 C C2 BCL . . . M 3 7.595 24.35 -59.694 1 70.04 ? C2 BCL 102 E 1 HETATM 49 C C3 BCL . . . M 3 6.472 24.73 -59.137 1 61.75 ? C3 BCL 102 E 1 HETATM 50 C C4 BCL . . . M 3 5.097 24.212 -59.507 1 60.37 ? C4 BCL 102 E 1 HETATM 51 C C5 BCL . . . M 3 6.431 25.745 -58.03 1 69.66 ? C5 BCL 102 E 1 HETATM 52 C C6 BCL . . . M 3 5.638 25.267 -56.874 1 68.81 ? C6 BCL 102 E 1 HETATM 53 C C7 BCL . . . M 3 5.7 26.202 -55.7 1 66.67 ? C7 BCL 102 E 1 HETATM 54 C C8 BCL . . . M 3 5.317 25.16 -54.677 1 66.4 ? C8 BCL 102 E 1 HETATM 55 C C9 BCL . . . M 3 4.684 25.887 -53.497 1 72.7 ? C9 BCL 102 E 1 HETATM 56 C C10 BCL . . . M 3 6.541 24.316 -54.279 1 61.02 ? C10 BCL 102 E 1 HETATM 57 C C11 BCL . . . M 3 6.164 23.52 -53.052 1 60.63 ? C11 BCL 102 E 1 HETATM 58 C C12 BCL . . . M 3 5.31 22.306 -53.397 1 65.97 ? C12 BCL 102 E 1 HETATM 59 C C13 BCL . . . M 3 4.871 21.409 -52.205 1 68.11 ? C13 BCL 102 E 1 HETATM 60 C C14 BCL . . . M 3 5.918 21.246 -51.136 1 74.29 ? C14 BCL 102 E 1 HETATM 61 C C15 BCL . . . M 3 4.603 19.979 -52.616 1 63.33 ? C15 BCL 102 E 1 HETATM 62 C C16 BCL . . . M 3 3.366 20.046 -53.366 1 70.04 ? C16 BCL 102 E 1 HETATM 63 C C17 BCL . . . M 3 2.706 18.714 -53.709 1 76.71 ? C17 BCL 102 E 1 HETATM 64 C C18 BCL . . . M 3 3.413 17.889 -54.733 1 76.67 ? C18 BCL 102 E 1 HETATM 65 C C19 BCL . . . M 3 3.316 18.828 -55.944 1 82.29 ? C19 BCL 102 E 1 HETATM 66 C C20 BCL . . . M 3 2.709 16.553 -54.978 1 69.07 ? C20 BCL 102 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 66 #