data_6Q53 # _model_server_result.job_id n8uALw-knTydbhNoVMjsHQ _model_server_result.datetime_utc '2024-11-29 08:05:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":103}' # _entry.id 6Q53 # _exptl.entry_id 6Q53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.873 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYCOPENE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q53 _cell.length_a 177.24 _cell.length_b 177.24 _cell.length_c 177.24 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 C OD1 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc4 C OD2 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'C40 H56' _chem_comp.formula_weight 536.873 _chem_comp.id LYC _chem_comp.mon_nstd_flag . _chem_comp.name LYCOPENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LYC sing 370 n n C1 H11A LYC sing 371 n n C1 H12 LYC sing 372 n n C1 H13 LYC sing 373 n n C2 C3 LYC sing 374 n n C2 C4 LYC doub 375 n n C3 H31 LYC sing 376 n n C3 H32 LYC sing 377 n n C3 H33 LYC sing 378 n n C4 C5 LYC sing 379 n n C4 H4 LYC sing 380 n n C5 C6 LYC sing 381 n n C5 H51 LYC sing 382 n n C5 H52 LYC sing 383 n n C6 C7 LYC sing 384 n n C6 H61 LYC sing 385 n n C6 H62 LYC sing 386 n n C7 C8 LYC sing 387 n n C7 C9 LYC doub 388 e n C8 H81 LYC sing 389 n n C8 H82 LYC sing 390 n n C8 H83 LYC sing 391 n n C9 C10 LYC sing 392 n n C9 H9 LYC sing 393 n n C10 C11 LYC doub 394 e n C10 H10 LYC sing 395 n n C11 C12 LYC sing 396 n n C11 H11 LYC sing 397 n n C12 C13 LYC sing 398 n n C12 C14 LYC doub 399 e n C13 H131 LYC sing 400 n n C13 H132 LYC sing 401 n n C13 H133 LYC sing 402 n n C14 C15 LYC sing 403 n n C14 H14 LYC sing 404 n n C15 C16 LYC doub 405 e n C15 H15 LYC sing 406 n n C16 C17 LYC sing 407 n n C16 H16 LYC sing 408 n n C17 C18 LYC sing 409 n n C17 C19 LYC doub 410 e n C18 H181 LYC sing 411 n n C18 H182 LYC sing 412 n n C18 H183 LYC sing 413 n n C19 C20 LYC sing 414 n n C19 H19 LYC sing 415 n n C20 C21 LYC doub 416 e n C20 H20 LYC sing 417 n n C21 C50 LYC sing 418 n n C21 H21 LYC sing 419 n n C50 C51 LYC doub 420 e n C50 H50 LYC sing 421 n n C51 C52 LYC sing 422 n n C51 C53 LYC sing 423 n n C52 H521 LYC sing 424 n n C52 H522 LYC sing 425 n n C52 H523 LYC sing 426 n n C53 C54 LYC doub 427 e n C53 H53 LYC sing 428 n n C54 C55 LYC sing 429 n n C54 H54 LYC sing 430 n n C55 C56 LYC doub 431 e n C55 H55 LYC sing 432 n n C56 C57 LYC sing 433 n n C56 C58 LYC sing 434 n n C57 H571 LYC sing 435 n n C57 H572 LYC sing 436 n n C57 H573 LYC sing 437 n n C58 C59 LYC doub 438 e n C58 H58 LYC sing 439 n n C59 C60 LYC sing 440 n n C59 H59 LYC sing 441 n n C60 C61 LYC doub 442 e n C60 H60 LYC sing 443 n n C61 C62 LYC sing 444 n n C61 C63 LYC sing 445 n n C62 H621 LYC sing 446 n n C62 H622 LYC sing 447 n n C62 H623 LYC sing 448 n n C63 C64 LYC sing 449 n n C63 H631 LYC sing 450 n n C63 H632 LYC sing 451 n n C64 C65 LYC sing 452 n n C64 H641 LYC sing 453 n n C64 H642 LYC sing 454 n n C65 C66 LYC doub 455 n n C65 H65 LYC sing 456 n n C66 C67 LYC sing 457 n n C66 C68 LYC sing 458 n n C67 H671 LYC sing 459 n n C67 H672 LYC sing 460 n n C67 H673 LYC sing 461 n n C68 H681 LYC sing 462 n n C68 H682 LYC sing 463 n n C68 H683 LYC sing 464 n n # _atom_sites.entry_id 6Q53 _atom_sites.fract_transf_matrix[1][1] 0.005642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BCL A 1 101 62 BCL BCL . F 3 BCL A 1 102 63 BCL BCL . G 4 LYC A 1 103 102 LYC LYC . H 3 BCL B 1 101 59 BCL BCL . I 5 DET B 1 102 78 DET DET . J 3 BCL D 1 101 65 BCL BCL . K 3 BCL D 1 102 66 BCL BCL . L 4 LYC E 1 101 97 LYC LYC . M 3 BCL E 1 102 59 BCL BCL . N 5 DET E 1 103 77 DET DET . O 5 DET E 1 104 78 DET DET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LYC . . . G 4 24.004 2.741 -38.506 1 63.25 ? C1 LYC 103 A 1 HETATM 2 C C2 LYC . . . G 4 25.01 2.337 -39.526 1 59.64 ? C2 LYC 103 A 1 HETATM 3 C C3 LYC . . . G 4 26.418 2.059 -39.129 1 63.82 ? C3 LYC 103 A 1 HETATM 4 C C4 LYC . . . G 4 24.587 2.236 -40.779 1 66.85 ? C4 LYC 103 A 1 HETATM 5 C C5 LYC . . . G 4 25.409 1.857 -41.983 1 69.16 ? C5 LYC 103 A 1 HETATM 6 C C6 LYC . . . G 4 24.89 2.701 -43.154 1 69.67 ? C6 LYC 103 A 1 HETATM 7 C C7 LYC . . . G 4 24.659 1.949 -44.459 1 67.39 ? C7 LYC 103 A 1 HETATM 8 C C8 LYC . . . G 4 24.81 0.461 -44.567 1 65.64 ? C8 LYC 103 A 1 HETATM 9 C C9 LYC . . . G 4 24.307 2.66 -45.54 1 65.83 ? C9 LYC 103 A 1 HETATM 10 C C10 LYC . . . G 4 24.056 2.116 -46.876 1 64.29 ? C10 LYC 103 A 1 HETATM 11 C C11 LYC . . . G 4 24.022 3.018 -47.856 1 63.03 ? C11 LYC 103 A 1 HETATM 12 C C12 LYC . . . G 4 23.792 2.75 -49.288 1 62.49 ? C12 LYC 103 A 1 HETATM 13 C C13 LYC . . . G 4 23.74 1.353 -49.831 1 58.97 ? C13 LYC 103 A 1 HETATM 14 C C14 LYC . . . G 4 23.65 3.814 -50.093 1 64.91 ? C14 LYC 103 A 1 HETATM 15 C C15 LYC . . . G 4 23.411 3.691 -51.53 1 68.05 ? C15 LYC 103 A 1 HETATM 16 C C16 LYC . . . G 4 23.454 4.783 -52.289 1 67.72 ? C16 LYC 103 A 1 HETATM 17 C C17 LYC . . . G 4 23.208 4.758 -53.745 1 67.96 ? C17 LYC 103 A 1 HETATM 18 C C18 LYC . . . G 4 23.67 3.617 -54.602 1 66.71 ? C18 LYC 103 A 1 HETATM 19 C C19 LYC . . . G 4 22.585 5.825 -54.259 1 73.59 ? C19 LYC 103 A 1 HETATM 20 C C20 LYC . . . G 4 22.209 6.018 -55.654 1 78.64 ? C20 LYC 103 A 1 HETATM 21 C C21 LYC . . . G 4 21.722 7.21 -55.996 1 80.48 ? C21 LYC 103 A 1 HETATM 22 C C50 LYC . . . G 4 21.254 7.491 -57.345 1 82.46 ? C50 LYC 103 A 1 HETATM 23 C C51 LYC . . . G 4 20.625 8.646 -57.605 1 82.08 ? C51 LYC 103 A 1 HETATM 24 C C52 LYC . . . G 4 20.453 9.674 -56.53 1 81.64 ? C52 LYC 103 A 1 HETATM 25 C C53 LYC . . . G 4 20.113 8.913 -58.961 1 86.01 ? C53 LYC 103 A 1 HETATM 26 C C54 LYC . . . G 4 19.087 9.736 -59.196 1 84.94 ? C54 LYC 103 A 1 HETATM 27 C C55 LYC . . . G 4 18.676 9.904 -60.589 1 83.79 ? C55 LYC 103 A 1 HETATM 28 C C56 LYC . . . G 4 17.663 10.667 -61.036 1 77.8 ? C56 LYC 103 A 1 HETATM 29 C C57 LYC . . . G 4 16.814 11.505 -60.129 1 71.45 ? C57 LYC 103 A 1 HETATM 30 C C58 LYC . . . G 4 17.444 10.68 -62.494 1 78 ? C58 LYC 103 A 1 HETATM 31 C C59 LYC . . . G 4 16.287 10.991 -63.08 1 82.93 ? C59 LYC 103 A 1 HETATM 32 C C60 LYC . . . G 4 16.233 10.957 -64.55 1 80.39 ? C60 LYC 103 A 1 HETATM 33 C C61 LYC . . . G 4 15.189 11.28 -65.352 1 75.62 ? C61 LYC 103 A 1 HETATM 34 C C62 LYC . . . G 4 13.847 11.755 -64.852 1 71.23 ? C62 LYC 103 A 1 HETATM 35 C C63 LYC . . . G 4 15.417 11.162 -66.84 1 72.29 ? C63 LYC 103 A 1 HETATM 36 C C64 LYC . . . G 4 14.34 10.323 -67.513 1 78.36 ? C64 LYC 103 A 1 HETATM 37 C C65 LYC . . . G 4 14.741 9.993 -68.944 1 78.15 ? C65 LYC 103 A 1 HETATM 38 C C66 LYC . . . G 4 13.95 9.348 -69.83 1 69.94 ? C66 LYC 103 A 1 HETATM 39 C C67 LYC . . . G 4 14.432 9.06 -71.206 1 69.98 ? C67 LYC 103 A 1 HETATM 40 C C68 LYC . . . G 4 12.57 8.894 -69.493 1 75.49 ? C68 LYC 103 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #