data_6Q53 # _model_server_result.job_id qHBFHeuMxyp91OdWwCe55w _model_server_result.datetime_utc '2024-11-14 12:45:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":104}' # _entry.id 6Q53 # _exptl.entry_id 6Q53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.375 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q53 _cell.length_a 177.24 _cell.length_b 177.24 _cell.length_c 177.24 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 F MG BCL . A BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 C OD1 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc4 C OD2 ASP 15 D ASP 15 1_555 K MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'C13 H29 N O' _chem_comp.formula_weight 215.375 _chem_comp.id DET _chem_comp.mon_nstd_flag . _chem_comp.name UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O DET sing 218 n n N CM1 DET sing 219 n n N CM2 DET sing 220 n n N C1 DET sing 221 n n CM1 HM11 DET sing 222 n n CM1 HM12 DET sing 223 n n CM1 HM13 DET sing 224 n n CM2 HM21 DET sing 225 n n CM2 HM22 DET sing 226 n n CM2 HM23 DET sing 227 n n C1 C2 DET sing 228 n n C1 H11 DET sing 229 n n C1 H12 DET sing 230 n n C2 C3 DET sing 231 n n C2 H21 DET sing 232 n n C2 H22 DET sing 233 n n C3 C4 DET sing 234 n n C3 H31 DET sing 235 n n C3 H32 DET sing 236 n n C4 C5 DET sing 237 n n C4 H41 DET sing 238 n n C4 H42 DET sing 239 n n C5 C6 DET sing 240 n n C5 H51 DET sing 241 n n C5 H52 DET sing 242 n n C6 C7 DET sing 243 n n C6 H61 DET sing 244 n n C6 H62 DET sing 245 n n C7 C8 DET sing 246 n n C7 H71 DET sing 247 n n C7 H72 DET sing 248 n n C8 C9 DET sing 249 n n C8 H81 DET sing 250 n n C8 H82 DET sing 251 n n C9 C10 DET sing 252 n n C9 H91 DET sing 253 n n C9 H92 DET sing 254 n n C10 C11 DET sing 255 n n C10 H101 DET sing 256 n n C10 H102 DET sing 257 n n C11 H111 DET sing 258 n n C11 H112 DET sing 259 n n C11 H113 DET sing 260 n n # _atom_sites.entry_id 6Q53 _atom_sites.fract_transf_matrix[1][1] 0.005642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BCL A 1 101 62 BCL BCL . F 3 BCL A 1 102 63 BCL BCL . G 4 LYC A 1 103 102 LYC LYC . H 3 BCL B 1 101 59 BCL BCL . I 5 DET B 1 102 78 DET DET . J 3 BCL D 1 101 65 BCL BCL . K 3 BCL D 1 102 66 BCL BCL . L 4 LYC E 1 101 97 LYC LYC . M 3 BCL E 1 102 59 BCL BCL . N 5 DET E 1 103 77 DET DET . O 5 DET E 1 104 78 DET DET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DET . . . O 5 14.109 30.32 -69.376 1 125.57 ? N DET 104 E 1 HETATM 2 O O DET . . . O 5 15.305 30.649 -69.531 1 129.95 ? O DET 104 E 1 HETATM 3 C CM1 DET . . . O 5 13.24 31.47 -69.676 1 126.47 ? CM1 DET 104 E 1 HETATM 4 C CM2 DET . . . O 5 13.882 29.912 -67.983 1 107.27 ? CM2 DET 104 E 1 HETATM 5 C C1 DET . . . O 5 13.82 29.182 -70.264 1 115.57 ? C1 DET 104 E 1 HETATM 6 C C2 DET . . . O 5 13.758 29.573 -71.742 1 120.67 ? C2 DET 104 E 1 HETATM 7 C C3 DET . . . O 5 12.554 28.894 -72.405 1 122.33 ? C3 DET 104 E 1 HETATM 8 C C4 DET . . . O 5 11.261 29.164 -71.615 1 127.71 ? C4 DET 104 E 1 HETATM 9 C C5 DET . . . O 5 10.234 28.021 -71.598 1 108.68 ? C5 DET 104 E 1 HETATM 10 C C6 DET . . . O 5 9.608 27.812 -70.213 1 87.78 ? C6 DET 104 E 1 HETATM 11 C C7 DET . . . O 5 10.444 26.829 -69.396 1 92.69 ? C7 DET 104 E 1 HETATM 12 C C8 DET . . . O 5 10.342 27.053 -67.888 1 89.58 ? C8 DET 104 E 1 HETATM 13 C C9 DET . . . O 5 11.45 26.338 -67.114 1 80.52 ? C9 DET 104 E 1 HETATM 14 C C10 DET . . . O 5 11.144 26.169 -65.628 1 69.04 ? C10 DET 104 E 1 HETATM 15 C C11 DET . . . O 5 11.586 27.366 -64.82 1 76.16 ? C11 DET 104 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #