data_6Q5E # _model_server_result.job_id K54zz7B36G4-SW5chbjwYw _model_server_result.datetime_utc '2024-11-04 23:38:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6Q5E # _exptl.entry_id 6Q5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q5E _cell.length_a 85.63 _cell.length_b 159.26 _cell.length_c 78.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 484 A CYS 484 1_555 A SG CYS 491 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc1 B FE FE . A FE 801 1_555 C O3 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc2 B FE FE . A FE 801 1_555 C O1 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 B FE FE . A FE 801 1_555 C O2 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 B FE FE . A FE 801 1_555 C O6 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc5 B FE FE . A FE 801 1_555 C O4 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 B FE FE . A FE 801 1_555 C O5 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C30 H27 N3 O15' _chem_comp.formula_weight 669.546 _chem_comp.id EB4 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Enterobactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 EB4 sing 83 n n O6 HO6 EB4 sing 84 n n O4 HO4 EB4 sing 85 n n O5 C5 EB4 sing 86 n n O5 HO5 EB4 sing 87 n n N1 C22 EB4 sing 88 n n N1 HN1 EB4 sing 89 n n C5 C2 EB4 doub 90 n y C5 C8 EB4 sing 91 n y C4 O4 EB4 sing 92 n n C4 C1 EB4 sing 93 n y C1 O1 EB4 sing 94 n n C2 C17 EB4 sing 95 n y C6 C3 EB4 sing 96 n y C8 C11 EB4 doub 97 n y C8 H8 EB4 sing 98 n n N2 C23 EB4 sing 99 n n N2 HN2 EB4 sing 100 n n C9 C6 EB4 doub 101 n y C9 C12 EB4 sing 102 n y C9 H9 EB4 sing 103 n n C10 C7 EB4 sing 104 n y C10 C13 EB4 doub 105 n y C10 H10 EB4 sing 106 n n O3 HO3 EB4 sing 107 n n N3 C21 EB4 sing 108 n n N3 C24 EB4 sing 109 n n N3 HN3 EB4 sing 110 n n C16 C1 EB4 doub 111 n y C16 C19 EB4 sing 112 n n C7 C4 EB4 doub 113 n y C7 H7 EB4 sing 114 n n C3 O3 EB4 sing 115 n n C3 C18 EB4 doub 116 n y C11 C14 EB4 sing 117 n y C11 H11 EB4 sing 118 n n O1 HO1 EB4 sing 119 n n O2 C2 EB4 sing 120 n n O2 HO2 EB4 sing 121 n n C12 C15 EB4 doub 122 n y C12 H12 EB4 sing 123 n n C15 C18 EB4 sing 124 n y C15 H15 EB4 sing 125 n n C14 H14 EB4 sing 126 n n C13 C16 EB4 sing 127 n y C13 H13 EB4 sing 128 n n O7 C19 EB4 doub 129 n n C19 N1 EB4 sing 130 n n C22 C25 EB4 sing 131 n n C22 C28 EB4 sing 132 n n C22 H22 EB4 sing 133 n n C25 O15 EB4 sing 134 n n O10 C25 EB4 doub 135 n n O15 C30 EB4 sing 136 n n C30 C24 EB4 sing 137 n n C30 H30 EB4 sing 138 n n C30 H30A EB4 sing 139 n n C24 H24 EB4 sing 140 n n C21 O9 EB4 doub 141 n n C18 C21 EB4 sing 142 n n C27 C24 EB4 sing 143 n n C27 O14 EB4 sing 144 n n O12 C27 EB4 doub 145 n n C28 H28 EB4 sing 146 n n C28 H28A EB4 sing 147 n n O13 C28 EB4 sing 148 n n O13 C26 EB4 sing 149 n n C26 C23 EB4 sing 150 n n O11 C26 EB4 doub 151 n n C23 C29 EB4 sing 152 n n C23 H23 EB4 sing 153 n n C29 O14 EB4 sing 154 n n C29 H29 EB4 sing 155 n n C29 H29A EB4 sing 156 n n C20 N2 EB4 sing 157 n n O8 C20 EB4 doub 158 n n C17 C14 EB4 doub 159 n y C17 C20 EB4 sing 160 n n # _atom_sites.entry_id 6Q5E _atom_sites.fract_transf_matrix[1][1] 0.011678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 801 1 FE FE . C 3 EB4 A 1 802 1 EB4 EB4 . D 4 LP5 A 1 803 1 LP5 LP5 . E 5 HOH A 1 901 21 HOH HOH . E 5 HOH A 2 902 9 HOH HOH . E 5 HOH A 3 903 35 HOH HOH . E 5 HOH A 4 904 20 HOH HOH . E 5 HOH A 5 905 18 HOH HOH . E 5 HOH A 6 906 13 HOH HOH . E 5 HOH A 7 907 36 HOH HOH . E 5 HOH A 8 908 31 HOH HOH . E 5 HOH A 9 909 29 HOH HOH . E 5 HOH A 10 910 27 HOH HOH . E 5 HOH A 11 911 28 HOH HOH . E 5 HOH A 12 912 17 HOH HOH . E 5 HOH A 13 913 10 HOH HOH . E 5 HOH A 14 914 22 HOH HOH . E 5 HOH A 15 915 15 HOH HOH . E 5 HOH A 16 916 7 HOH HOH . E 5 HOH A 17 917 25 HOH HOH . E 5 HOH A 18 918 11 HOH HOH . E 5 HOH A 19 919 2 HOH HOH . E 5 HOH A 20 920 24 HOH HOH . E 5 HOH A 21 921 16 HOH HOH . E 5 HOH A 22 922 12 HOH HOH . E 5 HOH A 23 923 19 HOH HOH . E 5 HOH A 24 924 5 HOH HOH . E 5 HOH A 25 925 30 HOH HOH . E 5 HOH A 26 926 6 HOH HOH . E 5 HOH A 27 927 1 HOH HOH . E 5 HOH A 28 928 4 HOH HOH . E 5 HOH A 29 929 34 HOH HOH . E 5 HOH A 30 930 3 HOH HOH . E 5 HOH A 31 931 23 HOH HOH . E 5 HOH A 32 932 26 HOH HOH . E 5 HOH A 33 933 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 EB4 . . . C 3 -85.455 30.469 124.957 1 73.58 ? O6 EB4 802 A 1 HETATM 2 O O4 EB4 . . . C 3 -85.535 30.492 127.695 1 71.73 ? O4 EB4 802 A 1 HETATM 3 O O5 EB4 . . . C 3 -85.541 33.234 126.376 1 55.47 ? O5 EB4 802 A 1 HETATM 4 N N1 EB4 . . . C 3 -90.507 30.164 128.537 1 108.69 ? N1 EB4 802 A 1 HETATM 5 C C5 EB4 . . . C 3 -86.254 34.396 126.339 1 54.72 ? C5 EB4 802 A 1 HETATM 6 C C4 EB4 . . . C 3 -86.265 29.925 128.702 1 81 ? C4 EB4 802 A 1 HETATM 7 C C1 EB4 . . . C 3 -87.642 30.147 128.703 1 82.16 ? C1 EB4 802 A 1 HETATM 8 C C2 EB4 . . . C 3 -87.642 34.317 126.235 1 64.89 ? C2 EB4 802 A 1 HETATM 9 C C6 EB4 . . . C 3 -86.101 29.937 123.876 1 76.6 ? C6 EB4 802 A 1 HETATM 10 C C8 EB4 . . . C 3 -85.63 35.627 126.394 1 65.35 ? C8 EB4 802 A 1 HETATM 11 N N2 EB4 . . . C 3 -90.48 34.255 125.987 1 63.36 ? N2 EB4 802 A 1 HETATM 12 C C9 EB4 . . . C 3 -85.424 29.496 122.754 1 68.34 ? C9 EB4 802 A 1 HETATM 13 C C10 EB4 . . . C 3 -86.499 28.524 130.638 1 89.63 ? C10 EB4 802 A 1 HETATM 14 O O3 EB4 . . . C 3 -88.078 30.34 125.042 1 71.3 ? O3 EB4 802 A 1 HETATM 15 N N3 EB4 . . . C 3 -90.379 29.834 123.813 1 68.28 ? N3 EB4 802 A 1 HETATM 16 C C16 EB4 . . . C 3 -88.458 29.55 129.673 1 90.99 ? C16 EB4 802 A 1 HETATM 17 C C7 EB4 . . . C 3 -85.694 29.122 129.67 1 82.31 ? C7 EB4 802 A 1 HETATM 18 C C3 EB4 . . . C 3 -87.492 29.849 123.928 1 69.7 ? C3 EB4 802 A 1 HETATM 19 C C11 EB4 . . . C 3 -86.392 36.793 126.366 1 64.64 ? C11 EB4 802 A 1 HETATM 20 O O1 EB4 . . . C 3 -88.113 30.961 127.73 1 82.15 ? O1 EB4 802 A 1 HETATM 21 O O2 EB4 . . . C 3 -88.171 33.076 126.144 1 63.79 ? O2 EB4 802 A 1 HETATM 22 C C12 EB4 . . . C 3 -86.135 28.974 121.676 1 62.22 ? C12 EB4 802 A 1 HETATM 23 C C15 EB4 . . . C 3 -87.494 28.885 121.728 1 63.44 ? C15 EB4 802 A 1 HETATM 24 C C14 EB4 . . . C 3 -87.753 36.719 126.293 1 67.26 ? C14 EB4 802 A 1 HETATM 25 C C13 EB4 . . . C 3 -87.846 28.742 130.639 1 88.39 ? C13 EB4 802 A 1 HETATM 26 O O7 EB4 . . . C 3 -90.603 29.306 130.622 1 87.97 ? O7 EB4 802 A 1 HETATM 27 C C19 EB4 . . . C 3 -89.941 29.705 129.663 1 95.24 ? C19 EB4 802 A 1 HETATM 28 C C22 EB4 . . . C 3 -91.936 30.445 128.442 1 108.8 ? C22 EB4 802 A 1 HETATM 29 C C25 EB4 . . . C 3 -92.526 30.094 127.076 1 113.52 ? C25 EB4 802 A 1 HETATM 30 O O10 EB4 . . . C 3 -93.648 30.39 126.745 1 114.03 ? O10 EB4 802 A 1 HETATM 31 O O15 EB4 . . . C 3 -91.693 29.387 126.314 1 85.93 ? O15 EB4 802 A 1 HETATM 32 C C30 EB4 . . . C 3 -92.246 28.867 125.078 1 75.42 ? C30 EB4 802 A 1 HETATM 33 C C24 EB4 . . . C 3 -91.827 29.719 123.881 1 71.39 ? C24 EB4 802 A 1 HETATM 34 C C21 EB4 . . . C 3 -89.696 29.198 122.858 1 68.1 ? C21 EB4 802 A 1 HETATM 35 C C18 EB4 . . . C 3 -88.211 29.313 122.852 1 72.26 ? C18 EB4 802 A 1 HETATM 36 O O9 EB4 . . . C 3 -90.27 28.541 121.994 1 70.47 ? O9 EB4 802 A 1 HETATM 37 C C27 EB4 . . . C 3 -92.491 31.093 123.894 1 76.95 ? C27 EB4 802 A 1 HETATM 38 O O12 EB4 . . . C 3 -93.493 31.358 123.284 1 78.06 ? O12 EB4 802 A 1 HETATM 39 C C28 EB4 . . . C 3 -92.228 31.913 128.763 1 92.54 ? C28 EB4 802 A 1 HETATM 40 O O13 EB4 . . . C 3 -91.698 32.798 127.74 1 85.48 ? O13 EB4 802 A 1 HETATM 41 C C26 EB4 . . . C 3 -92.582 33.423 126.966 1 77.86 ? C26 EB4 802 A 1 HETATM 42 O O11 EB4 . . . C 3 -93.772 33.42 127.16 1 76.66 ? O11 EB4 802 A 1 HETATM 43 C C23 EB4 . . . C 3 -91.916 34.12 125.784 1 70.11 ? C23 EB4 802 A 1 HETATM 44 C C29 EB4 . . . C 3 -92.227 33.368 124.489 1 66.69 ? C29 EB4 802 A 1 HETATM 45 O O14 EB4 . . . C 3 -91.791 31.985 124.587 1 71.26 ? O14 EB4 802 A 1 HETATM 46 C C20 EB4 . . . C 3 -89.902 35.446 126.17 1 67.21 ? C20 EB4 802 A 1 HETATM 47 O O8 EB4 . . . C 3 -90.553 36.478 126.325 1 74.28 ? O8 EB4 802 A 1 HETATM 48 C C17 EB4 . . . C 3 -88.415 35.486 126.227 1 73.08 ? C17 EB4 802 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #