data_6Q5E # _model_server_result.job_id VOIrdCI6ZEbilJNGptw2cg _model_server_result.datetime_utc '2024-11-04 23:42:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 6Q5E # _exptl.entry_id 6Q5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 711.861 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q5E _cell.length_a 85.63 _cell.length_b 159.26 _cell.length_c 78.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 484 A CYS 484 1_555 A SG CYS 491 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc1 B FE FE . A FE 801 1_555 C O3 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc2 B FE FE . A FE 801 1_555 C O1 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 B FE FE . A FE 801 1_555 C O2 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 B FE FE . A FE 801 1_555 C O6 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc5 B FE FE . A FE 801 1_555 C O4 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 B FE FE . A FE 801 1_555 C O5 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C34 H66 N O12 P' _chem_comp.formula_weight 711.861 _chem_comp.id LP5 _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O48 P45 LP5 sing 272 n n O48 HO48 LP5 sing 273 n n P45 O1 LP5 sing 274 n n P45 O47 LP5 doub 275 n n P45 O46 LP5 sing 276 n n O46 HO46 LP5 sing 277 n n O1 C1 LP5 sing 278 n n C1 C2 LP5 sing 279 n n C1 O5 LP5 sing 280 n n C1 H1 LP5 sing 281 n n C2 C3 LP5 sing 282 n n C2 N2 LP5 sing 283 n n C2 H2 LP5 sing 284 n n N2 C7 LP5 sing 285 n n N2 HN2 LP5 sing 286 n n C7 O7 LP5 doub 287 n n C7 C8 LP5 sing 288 n n C8 C16 LP5 sing 289 n n C8 H81 LP5 sing 290 n n C8 H82 LP5 sing 291 n n C16 C17 LP5 sing 292 n n C16 O44 LP5 sing 293 n n C16 H16 LP5 sing 294 n n O44 HO44 LP5 sing 295 n n C17 C18 LP5 sing 296 n n C17 H171 LP5 sing 297 n n C17 H172 LP5 sing 298 n n C18 C19 LP5 sing 299 n n C18 H181 LP5 sing 300 n n C18 H182 LP5 sing 301 n n C19 C20 LP5 sing 302 n n C19 H191 LP5 sing 303 n n C19 H192 LP5 sing 304 n n C20 C21 LP5 sing 305 n n C20 H201 LP5 sing 306 n n C20 H202 LP5 sing 307 n n C21 C22 LP5 sing 308 n n C21 H211 LP5 sing 309 n n C21 H212 LP5 sing 310 n n C22 C23 LP5 sing 311 n n C22 H221 LP5 sing 312 n n C22 H222 LP5 sing 313 n n C23 C24 LP5 sing 314 n n C23 H231 LP5 sing 315 n n C23 H232 LP5 sing 316 n n C24 C25 LP5 sing 317 n n C24 H241 LP5 sing 318 n n C24 H242 LP5 sing 319 n n C25 C26 LP5 sing 320 n n C25 H251 LP5 sing 321 n n C25 H252 LP5 sing 322 n n C26 C27 LP5 sing 323 n n C26 H261 LP5 sing 324 n n C26 H262 LP5 sing 325 n n C27 H271 LP5 sing 326 n n C27 H272 LP5 sing 327 n n C27 H273 LP5 sing 328 n n C3 O3 LP5 sing 329 n n C3 C4 LP5 sing 330 n n C3 H3 LP5 sing 331 n n C4 O4 LP5 sing 332 n n C4 C5 LP5 sing 333 n n C4 H4 LP5 sing 334 n n C5 C6 LP5 sing 335 n n C5 O5 LP5 sing 336 n n C5 H5 LP5 sing 337 n n C6 O6 LP5 sing 338 n n C6 H61 LP5 sing 339 n n C6 H62 LP5 sing 340 n n O6 HO6 LP5 sing 341 n n O4 HO4 LP5 sing 342 n n O3 C28 LP5 sing 343 n n C28 C29 LP5 sing 344 n n C28 O42 LP5 doub 345 n n C29 C30 LP5 sing 346 n n C29 H291 LP5 sing 347 n n C29 H292 LP5 sing 348 n n C30 C31 LP5 sing 349 n n C30 O43 LP5 sing 350 n n C30 H30 LP5 sing 351 n n O43 HO43 LP5 sing 352 n n C31 C32 LP5 sing 353 n n C31 H311 LP5 sing 354 n n C31 H312 LP5 sing 355 n n C32 C33 LP5 sing 356 n n C32 H321 LP5 sing 357 n n C32 H322 LP5 sing 358 n n C33 C34 LP5 sing 359 n n C33 H331 LP5 sing 360 n n C33 H332 LP5 sing 361 n n C34 C35 LP5 sing 362 n n C34 H341 LP5 sing 363 n n C34 H342 LP5 sing 364 n n C35 C36 LP5 sing 365 n n C35 H351 LP5 sing 366 n n C35 H352 LP5 sing 367 n n C36 C37 LP5 sing 368 n n C36 H361 LP5 sing 369 n n C36 H362 LP5 sing 370 n n C37 C38 LP5 sing 371 n n C37 H371 LP5 sing 372 n n C37 H372 LP5 sing 373 n n C38 C39 LP5 sing 374 n n C38 H381 LP5 sing 375 n n C38 H382 LP5 sing 376 n n C39 C40 LP5 sing 377 n n C39 H391 LP5 sing 378 n n C39 H392 LP5 sing 379 n n C40 C41 LP5 sing 380 n n C40 H401 LP5 sing 381 n n C40 H402 LP5 sing 382 n n C41 H411 LP5 sing 383 n n C41 H412 LP5 sing 384 n n C41 H413 LP5 sing 385 n n # _atom_sites.entry_id 6Q5E _atom_sites.fract_transf_matrix[1][1] 0.011678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 801 1 FE FE . C 3 EB4 A 1 802 1 EB4 EB4 . D 4 LP5 A 1 803 1 LP5 LP5 . E 5 HOH A 1 901 21 HOH HOH . E 5 HOH A 2 902 9 HOH HOH . E 5 HOH A 3 903 35 HOH HOH . E 5 HOH A 4 904 20 HOH HOH . E 5 HOH A 5 905 18 HOH HOH . E 5 HOH A 6 906 13 HOH HOH . E 5 HOH A 7 907 36 HOH HOH . E 5 HOH A 8 908 31 HOH HOH . E 5 HOH A 9 909 29 HOH HOH . E 5 HOH A 10 910 27 HOH HOH . E 5 HOH A 11 911 28 HOH HOH . E 5 HOH A 12 912 17 HOH HOH . E 5 HOH A 13 913 10 HOH HOH . E 5 HOH A 14 914 22 HOH HOH . E 5 HOH A 15 915 15 HOH HOH . E 5 HOH A 16 916 7 HOH HOH . E 5 HOH A 17 917 25 HOH HOH . E 5 HOH A 18 918 11 HOH HOH . E 5 HOH A 19 919 2 HOH HOH . E 5 HOH A 20 920 24 HOH HOH . E 5 HOH A 21 921 16 HOH HOH . E 5 HOH A 22 922 12 HOH HOH . E 5 HOH A 23 923 19 HOH HOH . E 5 HOH A 24 924 5 HOH HOH . E 5 HOH A 25 925 30 HOH HOH . E 5 HOH A 26 926 6 HOH HOH . E 5 HOH A 27 927 1 HOH HOH . E 5 HOH A 28 928 4 HOH HOH . E 5 HOH A 29 929 34 HOH HOH . E 5 HOH A 30 930 3 HOH HOH . E 5 HOH A 31 931 23 HOH HOH . E 5 HOH A 32 932 26 HOH HOH . E 5 HOH A 33 933 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 LP5 . . . D 4 -79.888 0.524 102.742 1 99.51 ? N2 LP5 803 A 1 HETATM 2 C C7 LP5 . . . D 4 -79.02 -0.044 101.899 1 109.64 ? C7 LP5 803 A 1 HETATM 3 C C8 LP5 . . . D 4 -78.41 -1.327 102.381 1 106.45 ? C8 LP5 803 A 1 HETATM 4 C C16 LP5 . . . D 4 -77.662 -2.073 101.281 1 112.04 ? C16 LP5 803 A 1 HETATM 5 O O44 LP5 . . . D 4 -78.162 -3.406 101.255 1 110.59 ? O44 LP5 803 A 1 HETATM 6 C C17 LP5 . . . D 4 -76.143 -2.07 101.435 1 105.74 ? C17 LP5 803 A 1 HETATM 7 C C18 LP5 . . . D 4 -75.367 -2.955 100.472 1 100.23 ? C18 LP5 803 A 1 HETATM 8 C C19 LP5 . . . D 4 -75.171 -2.416 99.065 1 92.43 ? C19 LP5 803 A 1 HETATM 9 C C20 LP5 . . . D 4 -76.299 -2.746 98.104 1 97.39 ? C20 LP5 803 A 1 HETATM 10 C C21 LP5 . . . D 4 -75.891 -2.882 96.653 1 88.57 ? C21 LP5 803 A 1 HETATM 11 C C22 LP5 . . . D 4 -77.037 -3.194 95.713 1 81.79 ? C22 LP5 803 A 1 HETATM 12 C C23 LP5 . . . D 4 -77.009 -2.428 94.408 1 79.39 ? C23 LP5 803 A 1 HETATM 13 C C24 LP5 . . . D 4 -76.048 -2.978 93.374 1 78.34 ? C24 LP5 803 A 1 HETATM 14 C C25 LP5 . . . D 4 -76.004 -2.219 92.059 1 80.7 ? C25 LP5 803 A 1 HETATM 15 C C26 LP5 . . . D 4 -77.248 -2.289 91.195 1 81.76 ? C26 LP5 803 A 1 HETATM 16 C C27 LP5 . . . D 4 -77.021 -2.12 89.704 1 74.08 ? C27 LP5 803 A 1 HETATM 17 O O7 LP5 . . . D 4 -78.752 0.422 100.793 1 87.9 ? O7 LP5 803 A 1 HETATM 18 O O3 LP5 . . . D 4 -83.769 0.333 102.366 1 79.43 ? O3 LP5 803 A 1 HETATM 19 C C28 LP5 . . . D 4 -83.208 0.255 101.148 1 107.5 ? C28 LP5 803 A 1 HETATM 20 O O42 LP5 . . . D 4 -82.029 0.356 100.962 1 88.55 ? O42 LP5 803 A 1 HETATM 21 C C29 LP5 . . . D 4 -84.244 0.091 100.053 1 106.6 ? C29 LP5 803 A 1 HETATM 22 C C30 LP5 . . . D 4 -83.802 -0.5 98.712 1 110.98 ? C30 LP5 803 A 1 HETATM 23 O O43 LP5 . . . D 4 -83.073 -1.712 98.918 1 108.21 ? O43 LP5 803 A 1 HETATM 24 C C31 LP5 . . . D 4 -82.979 0.443 97.842 1 97.13 ? C31 LP5 803 A 1 HETATM 25 C C32 LP5 . . . D 4 -83.786 1.426 97.022 1 84.32 ? C32 LP5 803 A 1 HETATM 26 C C33 LP5 . . . D 4 -83.17 1.827 95.704 1 77.69 ? C33 LP5 803 A 1 HETATM 27 C C34 LP5 . . . D 4 -84.133 1.834 94.538 1 79.92 ? C34 LP5 803 A 1 HETATM 28 C C35 LP5 . . . D 4 -83.526 1.373 93.236 1 72.61 ? C35 LP5 803 A 1 HETATM 29 C C36 LP5 . . . D 4 -84.369 1.652 92.017 1 78.5 ? C36 LP5 803 A 1 HETATM 30 C C37 LP5 . . . D 4 -83.672 1.361 90.71 1 85.71 ? C37 LP5 803 A 1 HETATM 31 C C38 LP5 . . . D 4 -84.202 2.138 89.531 1 88.21 ? C38 LP5 803 A 1 HETATM 32 C C39 LP5 . . . D 4 -84.207 1.372 88.227 1 103.68 ? C39 LP5 803 A 1 HETATM 33 C C40 LP5 . . . D 4 -83.311 1.937 87.15 1 104.5 ? C40 LP5 803 A 1 HETATM 34 C C41 LP5 . . . D 4 -83.941 1.929 85.778 1 101.65 ? C41 LP5 803 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #