data_6Q5M # _model_server_result.job_id JLpnLD7M1nGoJ465flVizg _model_server_result.datetime_utc '2025-01-03 21:57:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6Q5M # _exptl.entry_id 6Q5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Q5M _cell.length_a 71.38 _cell.length_b 71.38 _cell.length_c 35.4 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 35.69 -61.816893 5.9 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale2 A C GLU 24 A GLU 23 1_555 A N DAB 25 A DAB 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C DAB 25 A DAB 24 1_555 A N LYS 26 A LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 B C GLU 24 B GLU 23 1_555 B N DAB 25 B DAB 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A O ALA 6 A ALA 5 1_555 C NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc2 A OE1 GLN 9 A GLN 8 1_555 C NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc3 A OE1 GLU 10 A GLU 9 1_555 C NA NA . A NA 101 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc4 C NA NA . A NA 101 4_544 B OE1 GLU 17 B GLU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Q5M _atom_sites.fract_transf_matrix[1][1] 0.01401 _atom_sites.fract_transf_matrix[1][2] 0.008088 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 101 1 NA NA . D 3 HOH A 1 201 33 HOH HOH . D 3 HOH A 2 202 36 HOH HOH . D 3 HOH A 3 203 21 HOH HOH . D 3 HOH A 4 204 28 HOH HOH . D 3 HOH A 5 205 11 HOH HOH . D 3 HOH A 6 206 4 HOH HOH . D 3 HOH A 7 207 8 HOH HOH . D 3 HOH A 8 208 34 HOH HOH . D 3 HOH A 9 209 10 HOH HOH . D 3 HOH A 10 210 2 HOH HOH . D 3 HOH A 11 211 1 HOH HOH . D 3 HOH A 12 212 39 HOH HOH . D 3 HOH A 13 213 32 HOH HOH . D 3 HOH A 14 214 19 HOH HOH . D 3 HOH A 15 215 23 HOH HOH . D 3 HOH A 16 216 17 HOH HOH . D 3 HOH A 17 217 38 HOH HOH . E 3 HOH B 1 101 9 HOH HOH . E 3 HOH B 2 102 29 HOH HOH . E 3 HOH B 3 103 31 HOH HOH . E 3 HOH B 4 104 15 HOH HOH . E 3 HOH B 5 105 13 HOH HOH . E 3 HOH B 6 106 14 HOH HOH . E 3 HOH B 7 107 5 HOH HOH . E 3 HOH B 8 108 7 HOH HOH . E 3 HOH B 9 109 12 HOH HOH . E 3 HOH B 10 110 18 HOH HOH . E 3 HOH B 11 111 6 HOH HOH . E 3 HOH B 12 112 40 HOH HOH . E 3 HOH B 13 113 37 HOH HOH . E 3 HOH B 14 114 24 HOH HOH . E 3 HOH B 15 115 3 HOH HOH . E 3 HOH B 16 116 20 HOH HOH . E 3 HOH B 17 117 35 HOH HOH . E 3 HOH B 18 118 22 HOH HOH . E 3 HOH B 19 119 16 HOH HOH . E 3 HOH B 20 120 27 HOH HOH . E 3 HOH B 21 121 26 HOH HOH . E 3 HOH B 22 122 30 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.588 _atom_site.Cartn_y -37.36 _atom_site.Cartn_z 12.395 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #