data_6Q5N # _model_server_result.job_id j5HJqgxQewqYPJjsCHBV2g _model_server_result.datetime_utc '2025-01-03 22:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":101}' # _entry.id 6Q5N # _exptl.entry_id 6Q5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q5N _cell.length_a 54.19 _cell.length_b 59.29 _cell.length_c 143.77 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,S,Y,Z,AA,BA,CA,DA 1 1 G,H,I,J,K,L,T,U,V,W,X,EA,FA,GA,HA,IA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C GLU 24 A GLU 23 1_555 A N NLE 25 A NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C NLE 25 A NLE 24 1_555 A N LYS 26 A LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale5 B C GLU 24 B GLU 23 1_555 B N NLE 25 B NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 B C NLE 25 B NLE 24 1_555 B N LYS 26 B LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 C C ACE 1 C ACE 0 1_555 C N GLY 2 C GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 C C GLU 24 C GLU 23 1_555 C N NLE 25 C NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale9 C C NLE 25 C NLE 24 1_555 C N LYS 26 C LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale10 D C ACE 1 D ACE 0 1_555 D N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 D C GLU 24 D GLU 23 1_555 D N NLE 25 D NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale12 D C NLE 25 D NLE 24 1_555 D N LYS 26 D LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 E C ACE 1 E ACE 0 1_555 E N GLY 2 E GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale14 E C GLU 24 E GLU 23 1_555 E N NLE 25 E NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 E C NLE 25 E NLE 24 1_555 E N LYS 26 E LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 F C ACE 1 F ACE 0 1_555 F N GLY 2 F GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 F C GLU 24 F GLU 23 1_555 F N NLE 25 F NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 F C NLE 25 F NLE 24 1_555 F N LYS 26 F LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 G C ACE 1 G ACE 0 1_555 G N GLY 2 G GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.292 ? covale ? covale20 G C GLU 24 G GLU 23 1_555 G N NLE 25 G NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale21 G C NLE 25 G NLE 24 1_555 G N LYS 26 G LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale22 H C ACE 1 H ACE 0 1_555 H N GLY 2 H GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale23 H C GLU 24 H GLU 23 1_555 H N NLE 25 H NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 H C NLE 25 H NLE 24 1_555 H N LYS 26 H LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 I C ACE 1 I ACE 0 1_555 I N GLY 2 I GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale26 I C GLU 24 I GLU 23 1_555 I N NLE 25 I NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale27 I C NLE 25 I NLE 24 1_555 I N LYS 26 I LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale28 J C ACE 1 J ACE 0 1_555 J N GLY 2 J GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale29 J C GLU 24 J GLU 23 1_555 J N NLE 25 J NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale30 J C NLE 25 J NLE 24 1_555 J N LYS 26 J LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale31 K C ACE 1 K ACE 0 1_555 K N GLY 2 K GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale32 K C GLU 24 K GLU 23 1_555 K N NLE 25 K NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale33 K C NLE 25 K NLE 24 1_555 K N LYS 26 K LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale34 L C ACE 1 L ACE 0 1_555 L N GLY 2 L GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale35 L C GLU 24 L GLU 23 1_555 L N NLE 25 L NLE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale36 L C NLE 25 L NLE 24 1_555 L N LYS 26 L LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 19 n n C1 O1 DIO sing 20 n n C1 H11 DIO sing 21 n n C1 H12 DIO sing 22 n n C2 C2' DIO sing 23 n n C2 O1 DIO sing 24 n n C2 H21 DIO sing 25 n n C2 H22 DIO sing 26 n n C1' O1' DIO sing 27 n n C1' "H1'1" DIO sing 28 n n C1' "H1'2" DIO sing 29 n n C2' O1' DIO sing 30 n n C2' "H2'1" DIO sing 31 n n C2' "H2'2" DIO sing 32 n n # _atom_sites.entry_id 6Q5N _atom_sites.fract_transf_matrix[1][1] 0.018454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 GOL A 1 101 2 GOL GOL . N 2 GOL B 1 101 6 GOL GOL . O 2 GOL B 1 102 9 GOL GOL . P 2 GOL C 1 101 10 GOL GOL . Q 2 GOL D 1 101 1 GOL GOL . R 2 GOL D 1 102 4 GOL GOL . S 2 GOL F 1 101 7 GOL GOL . T 3 DIO G 1 101 1 DIO DIO . U 2 GOL H 1 101 8 GOL GOL . V 2 GOL I 1 101 5 GOL GOL . W 2 GOL J 1 101 3 GOL GOL . X 2 GOL L 1 101 11 GOL GOL . Y 4 HOH A 1 201 44 HOH HOH . Y 4 HOH A 2 202 127 HOH HOH . Y 4 HOH A 3 203 7 HOH HOH . Y 4 HOH A 4 204 16 HOH HOH . Y 4 HOH A 5 205 117 HOH HOH . Y 4 HOH A 6 206 13 HOH HOH . Y 4 HOH A 7 207 18 HOH HOH . Y 4 HOH A 8 208 25 HOH HOH . Y 4 HOH A 9 209 210 HOH HOH . Y 4 HOH A 10 210 214 HOH HOH . Y 4 HOH A 11 211 162 HOH HOH . Y 4 HOH A 12 212 168 HOH HOH . Y 4 HOH A 13 213 218 HOH HOH . Z 4 HOH B 1 201 2 HOH HOH . Z 4 HOH B 2 202 163 HOH HOH . Z 4 HOH B 3 203 11 HOH HOH . Z 4 HOH B 4 204 109 HOH HOH . Z 4 HOH B 5 205 118 HOH HOH . Z 4 HOH B 6 206 167 HOH HOH . Z 4 HOH B 7 207 227 HOH HOH . Z 4 HOH B 8 208 166 HOH HOH . Z 4 HOH B 9 209 164 HOH HOH . Z 4 HOH B 10 210 65 HOH HOH . Z 4 HOH B 11 211 216 HOH HOH . AA 4 HOH C 1 201 138 HOH HOH . AA 4 HOH C 2 202 101 HOH HOH . AA 4 HOH C 3 203 85 HOH HOH . AA 4 HOH C 4 204 224 HOH HOH . BA 4 HOH D 1 201 43 HOH HOH . BA 4 HOH D 2 202 90 HOH HOH . BA 4 HOH D 3 203 119 HOH HOH . CA 4 HOH E 1 101 59 HOH HOH . CA 4 HOH E 2 102 35 HOH HOH . CA 4 HOH E 3 103 113 HOH HOH . CA 4 HOH E 4 104 146 HOH HOH . CA 4 HOH E 5 105 123 HOH HOH . CA 4 HOH E 6 106 79 HOH HOH . CA 4 HOH E 7 107 221 HOH HOH . DA 4 HOH F 1 201 37 HOH HOH . DA 4 HOH F 2 202 19 HOH HOH . DA 4 HOH F 3 203 107 HOH HOH . DA 4 HOH F 4 204 32 HOH HOH . DA 4 HOH F 5 205 26 HOH HOH . DA 4 HOH F 6 206 42 HOH HOH . DA 4 HOH F 7 207 6 HOH HOH . DA 4 HOH F 8 208 184 HOH HOH . DA 4 HOH F 9 209 5 HOH HOH . DA 4 HOH F 10 210 158 HOH HOH . DA 4 HOH F 11 211 67 HOH HOH . EA 4 HOH G 1 201 18 HOH HOH . EA 4 HOH G 2 202 23 HOH HOH . EA 4 HOH G 3 203 76 HOH HOH . EA 4 HOH G 4 204 3 HOH HOH . EA 4 HOH G 5 205 33 HOH HOH . EA 4 HOH G 6 206 22 HOH HOH . EA 4 HOH G 7 207 41 HOH HOH . EA 4 HOH G 8 208 14 HOH HOH . FA 4 HOH H 1 201 87 HOH HOH . FA 4 HOH H 2 202 63 HOH HOH . FA 4 HOH H 3 203 20 HOH HOH . FA 4 HOH H 4 204 78 HOH HOH . FA 4 HOH H 5 205 37 HOH HOH . FA 4 HOH H 6 206 70 HOH HOH . FA 4 HOH H 7 207 116 HOH HOH . FA 4 HOH H 8 208 9 HOH HOH . FA 4 HOH H 9 209 157 HOH HOH . GA 4 HOH I 1 201 34 HOH HOH . GA 4 HOH I 2 202 91 HOH HOH . GA 4 HOH I 3 203 79 HOH HOH . GA 4 HOH I 4 204 1 HOH HOH . GA 4 HOH I 5 205 97 HOH HOH . GA 4 HOH I 6 206 165 HOH HOH . GA 4 HOH I 7 207 226 HOH HOH . GA 4 HOH I 8 208 163 HOH HOH . GA 4 HOH I 9 209 120 HOH HOH . GA 4 HOH I 10 210 172 HOH HOH . HA 4 HOH J 1 201 8 HOH HOH . HA 4 HOH J 2 202 12 HOH HOH . HA 4 HOH J 3 203 108 HOH HOH . HA 4 HOH J 4 204 30 HOH HOH . HA 4 HOH J 5 205 9 HOH HOH . HA 4 HOH J 6 206 114 HOH HOH . HA 4 HOH J 7 207 36 HOH HOH . HA 4 HOH J 8 208 89 HOH HOH . HA 4 HOH J 9 209 217 HOH HOH . IA 4 HOH K 1 101 2 HOH HOH . IA 4 HOH K 2 102 86 HOH HOH . IA 4 HOH K 3 103 119 HOH HOH . IA 4 HOH K 4 104 87 HOH HOH . IA 4 HOH K 5 105 93 HOH HOH . IA 4 HOH K 6 106 63 HOH HOH . IA 4 HOH K 7 107 40 HOH HOH . IA 4 HOH K 8 108 66 HOH HOH . IA 4 HOH K 9 109 220 HOH HOH . IA 4 HOH K 10 110 167 HOH HOH . JA 4 HOH L 1 201 17 HOH HOH . JA 4 HOH L 2 202 73 HOH HOH . JA 4 HOH L 3 203 38 HOH HOH . JA 4 HOH L 4 204 80 HOH HOH . JA 4 HOH L 5 205 145 HOH HOH . JA 4 HOH L 6 206 112 HOH HOH . JA 4 HOH L 7 207 181 HOH HOH . JA 4 HOH L 8 208 33 HOH HOH . JA 4 HOH L 9 209 223 HOH HOH . JA 4 HOH L 10 210 215 HOH HOH . JA 4 HOH L 11 211 158 HOH HOH . JA 4 HOH L 12 212 211 HOH HOH . JA 4 HOH L 13 213 156 HOH HOH . JA 4 HOH L 14 214 164 HOH HOH . JA 4 HOH L 15 215 161 HOH HOH . JA 4 HOH L 16 216 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . T 3 19.552 -6.714 67.29 1 61.76 ? C1 DIO 101 G 1 HETATM 2 C C2 DIO . . . T 3 17.522 -7.778 67.402 1 80.4 ? C2 DIO 101 G 1 HETATM 3 C C1' DIO . . . T 3 19.787 -6.943 68.757 1 63.59 ? C1' DIO 101 G 1 HETATM 4 C C2' DIO . . . T 3 17.576 -7.829 68.93 1 74.39 ? C2' DIO 101 G 1 HETATM 5 O O1 DIO . . . T 3 18.849 -7.836 66.838 1 65.91 ? O1 DIO 101 G 1 HETATM 6 O O1' DIO . . . T 3 18.52 -6.867 69.409 1 73.61 ? O1' DIO 101 G 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 6 #