data_6Q6I # _model_server_result.job_id c67WNO2EuD2DaxDc5qggSg _model_server_result.datetime_utc '2025-01-03 12:10:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6Q6I # _exptl.entry_id 6Q6I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q6I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.951056 0 0.951056 0.309017 0 0 0 1 -0.00001 -0.00005 -0.00004 3 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 0.00009 0.00016 0.00013 4 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 0.0001 0.00009 0.00019 5 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 0.00003 -0.00005 -0.00009 6 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 -0.00005 0.00017 0.00002 7 'point symmetry operation' ? ? 0.309017 -0.951056 0 -0.951056 -0.309017 0 0 0 -1 -0.00001 -0.00004 0.00008 8 'point symmetry operation' ? ? -0.809017 -0.587785 0 -0.587785 0.809017 0 0 0 -1 0.00002 0.00019 0.0001 9 'point symmetry operation' ? ? -0.809017 0.587785 0 0.587785 0.809017 0 0 0 -1 0.00009 0.00025 0.00009 10 'point symmetry operation' ? ? 0.309017 0.951056 0 0.951056 -0.309017 0 0 0 -1 -0.00007 -0.00014 -0.00007 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 393 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 393 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.306 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6Q6I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PLP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 801 _pdbx_nonpoly_scheme.auth_seq_num 393 _pdbx_nonpoly_scheme.pdb_mon_id PLP _pdbx_nonpoly_scheme.auth_mon_id LLP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 -14.839 59.165 13.006 1 43.04 ? N1 PLP 801 A 1 HETATM 2 C C2 PLP . . . B 2 -14.004 59.178 14.06 1 43.04 ? C2 PLP 801 A 1 HETATM 3 C C2A PLP . . . B 2 -14.365 60.111 15.144 1 43.04 ? C2A PLP 801 A 1 HETATM 4 C C3 PLP . . . B 2 -12.876 58.37 14.141 1 43.04 ? C3 PLP 801 A 1 HETATM 5 O O3 PLP . . . B 2 -12.13 58.492 15.267 1 43.04 ? O3 PLP 801 A 1 HETATM 6 C C4 PLP . . . B 2 -12.578 57.485 13.107 1 43.04 ? C4 PLP 801 A 1 HETATM 7 C C4A PLP . . . B 2 -11.365 56.637 13.128 1 43.04 ? C4A PLP 801 A 1 HETATM 8 C C5 PLP . . . B 2 -13.405 57.485 12.017 1 43.04 ? C5 PLP 801 A 1 HETATM 9 C C6 PLP . . . B 2 -14.535 58.336 12.018 1 43.04 ? C6 PLP 801 A 1 HETATM 10 C C5A PLP . . . B 2 -13.231 56.615 10.79 1 43.04 ? C5A PLP 801 A 1 HETATM 11 O O4P PLP . . . B 2 -14.077 57.014 9.862 1 43.04 ? O4P PLP 801 A 1 HETATM 12 P P PLP . . . B 2 -14.129 56.236 8.262 1 43.04 ? P PLP 801 A 1 HETATM 13 O O1P PLP . . . B 2 -14.919 57.246 7.513 1 43.04 ? O1P PLP 801 A 1 HETATM 14 O O2P PLP . . . B 2 -12.675 56.083 7.967 1 43.04 ? O2P PLP 801 A 1 HETATM 15 O O3P PLP . . . B 2 -14.877 54.972 8.683 1 43.04 ? O3P PLP 801 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #