data_6Q6Q # _model_server_result.job_id A_J4li0-ee0jjhRyLxqxQA _model_server_result.datetime_utc '2024-11-26 11:12:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3006}' # _entry.id 6Q6Q # _exptl.entry_id 6Q6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q6Q _cell.length_a 148.197 _cell.length_b 148.197 _cell.length_c 132.204 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -132.204 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N CYS 44 A CYS 44 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 A SG CYS 44 A CYS 44 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc3 A SG CYS 49 A CYS 49 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A SG CYS 52 A CYS 52 1_555 C FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 C FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 A SG CYS 114 A CYS 114 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 A SG CYS 117 A CYS 117 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc8 A SG CYS 149 A CYS 149 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc9 A SG CYS 151 A CYS 151 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 332 n n C1 C3 MLI sing 333 n n C1 H11 MLI sing 334 n n C1 H12 MLI sing 335 n n C2 O6 MLI doub 336 n n C2 O7 MLI sing 337 n n C3 O8 MLI doub 338 n n C3 O9 MLI sing 339 n n # _atom_sites.entry_id 6Q6Q _atom_sites.fract_transf_matrix[1][1] 0.006748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 3001 3001 FES FES . C 2 FES A 1 3002 3002 FES FES . D 3 FAD A 1 3003 3006 FAD FAD . E 4 MLI A 1 3004 1 MLI MLI . F 4 MLI A 1 3005 2 MLI MLI . G 4 MLI A 1 3006 4 MLI MLI . H 4 MLI A 1 3007 5 MLI MLI . I 5 HOH A 1 3101 18 HOH HOH . I 5 HOH A 2 3102 10 HOH HOH . I 5 HOH A 3 3103 7 HOH HOH . I 5 HOH A 4 3104 1 HOH HOH . I 5 HOH A 5 3105 3 HOH HOH . I 5 HOH A 6 3106 19 HOH HOH . I 5 HOH A 7 3107 17 HOH HOH . I 5 HOH A 8 3108 14 HOH HOH . I 5 HOH A 9 3109 22 HOH HOH . I 5 HOH A 10 3110 8 HOH HOH . I 5 HOH A 11 3111 9 HOH HOH . I 5 HOH A 12 3112 11 HOH HOH . I 5 HOH A 13 3113 16 HOH HOH . I 5 HOH A 14 3114 20 HOH HOH . I 5 HOH A 15 3115 13 HOH HOH . I 5 HOH A 16 3116 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . G 4 -39.749 -45.267 -38.184 1 77.12 ? C1 MLI 3006 A 1 HETATM 2 C C2 MLI . . . G 4 -41.075 -44.876 -38.833 1 82.75 ? C2 MLI 3006 A 1 HETATM 3 C C3 MLI . . . G 4 -39.22 -44.101 -37.351 1 85.36 ? C3 MLI 3006 A 1 HETATM 4 O O6 MLI . . . G 4 -41.129 -44.675 -40.075 1 78.18 ? O6 MLI 3006 A 1 HETATM 5 O O7 MLI . . . G 4 -42.112 -44.752 -38.128 1 84.63 ? O7 MLI 3006 A 1 HETATM 6 O O8 MLI . . . G 4 -39.189 -42.941 -37.838 1 86.46 ? O8 MLI 3006 A 1 HETATM 7 O O9 MLI . . . G 4 -38.815 -44.301 -36.175 1 77.69 ? O9 MLI 3006 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #