data_6Q7L
#
_model_server_result.job_id            zFTBJEr6GkmxpyhdBTmavQ 
_model_server_result.datetime_utc      '2025-07-16 20:51:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q7l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":800}' 
#
_entry.id    6Q7L 
#
_exptl.entry_id    6Q7L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q7L 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q7L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    26-meric 
_pdbx_struct_assembly.oligomeric_count      26 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 UA N N 
? 5 VA N N 
? 5 WA N N 
? 5 XA N N 
? 5 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 367 A LYS 367 1_555 AA C4A PLP . A PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 B NZ LYS 367 B LYS 367 1_555 BA C4A PLP . B PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 C NZ LYS 367 C LYS 367 1_555 CA C4A PLP . C PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale4 D NZ LYS 367 D LYS 367 1_555 DA C4A PLP . D PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale5 E NZ LYS 367 E LYS 367 1_555 EA C4A PLP . E PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale6 F NZ LYS 367 F LYS 367 1_555 FA C4A PLP . F PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale7 G NZ LYS 367 G LYS 367 1_555 GA C4A PLP . G PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale8 H NZ LYS 367 H LYS 367 1_555 HA C4A PLP . H PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale9 I NZ LYS 367 I LYS 367 1_555 IA C4A PLP . I PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale10 J NZ LYS 367 J LYS 367 1_555 JA C4A PLP . J PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale11 K NZ LYS 367 K LYS 367 1_555 KA C4A PLP . K PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale12 L NZ LYS 367 L LYS 367 1_555 LA C4A PLP . L PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale13 M NZ LYS 367 M LYS 367 1_555 MA C4A PLP . M PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale14 N NZ LYS 367 N LYS 367 1_555 NA C4A PLP . N PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale15 O NZ LYS 367 O LYS 367 1_555 OA C4A PLP . O PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale16 P NZ LYS 367 P LYS 367 1_555 PA C4A PLP . P PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale17 Q NZ LYS 367 Q LYS 367 1_555 QA C4A PLP . Q PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale18 R NZ LYS 367 R LYS 367 1_555 RA C4A PLP . R PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale19 S NZ LYS 367 S LYS 367 1_555 SA C4A PLP . S PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale20 T NZ LYS 367 T LYS 367 1_555 TA C4A PLP . T PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6Q7L 
_atom_sites.fract_transf_matrix[1][1]    0.002066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002066 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
AA 4 PLP A 1 801 367 PLP LLP . 
BA 4 PLP B 1 801 367 PLP LLP . 
CA 4 PLP C 1 801 367 PLP LLP . 
DA 4 PLP D 1 801 367 PLP LLP . 
EA 4 PLP E 1 801 367 PLP LLP . 
FA 4 PLP F 1 801 367 PLP LLP . 
GA 4 PLP G 1 801 367 PLP LLP . 
HA 4 PLP H 1 801 367 PLP LLP . 
IA 4 PLP I 1 801 367 PLP LLP . 
JA 4 PLP J 1 801 367 PLP LLP . 
KA 4 PLP K 1 801 367 PLP LLP . 
LA 4 PLP L 1 801 367 PLP LLP . 
MA 4 PLP M 1 801 367 PLP LLP . 
NA 4 PLP N 1 801 367 PLP LLP . 
OA 4 PLP O 1 801 367 PLP LLP . 
PA 4 PLP P 1 801 367 PLP LLP . 
QA 4 PLP Q 1 801 367 PLP LLP . 
RA 4 PLP R 1 801 367 PLP LLP . 
SA 4 PLP S 1 801 367 PLP LLP . 
TA 4 PLP T 1 801 367 PLP LLP . 
UA 5 ADP V 1 800 800 ADP ADP . 
VA 5 ADP W 1 800 800 ADP ADP . 
WA 5 ADP X 1 800 800 ADP ADP . 
XA 5 ADP Y 1 800 800 ADP ADP . 
YA 5 ADP Z 1 800 800 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . VA 5 253.123 109.07 232.441 1 880.16 ? PB ADP 800 W 1 
HETATM 2 O O1B ADP . . . VA 5 252.662 110.207 231.562 1 880.16 -1 O1B ADP 800 W 1 
HETATM 3 O O2B ADP . . . VA 5 254.245 108.247 231.855 1 880.16 ? O2B ADP 800 W 1 
HETATM 4 O O3B ADP . . . VA 5 253.315 109.444 233.891 1 880.16 ? O3B ADP 800 W 1 
HETATM 5 P PA ADP . . . VA 5 251.956 106.651 233.231 1 880.16 ? PA ADP 800 W 1 
HETATM 6 O O1A ADP . . . VA 5 252.876 105.741 232.453 1 880.16 -1 O1A ADP 800 W 1 
HETATM 7 O O2A ADP . . . VA 5 252.226 106.929 234.69 1 880.16 ? O2A ADP 800 W 1 
HETATM 8 O O3A ADP . . . VA 5 251.868 108.06 232.457 1 880.16 ? O3A ADP 800 W 1 
HETATM 9 O O5' ADP . . . VA 5 250.455 106.083 233.096 1 880.16 ? O5' ADP 800 W 1 
HETATM 10 C C5' ADP . . . VA 5 250.017 104.999 233.913 1 880.16 ? C5' ADP 800 W 1 
HETATM 11 C C4' ADP . . . VA 5 248.611 104.582 233.499 1 880.16 ? C4' ADP 800 W 1 
HETATM 12 O O4' ADP . . . VA 5 247.738 105.715 233.48 1 880.16 ? O4' ADP 800 W 1 
HETATM 13 C C3' ADP . . . VA 5 248.594 103.983 232.102 1 880.16 ? C3' ADP 800 W 1 
HETATM 14 O O3' ADP . . . VA 5 248.361 102.574 232.174 1 880.16 ? O3' ADP 800 W 1 
HETATM 15 C C2' ADP . . . VA 5 247.452 104.664 231.374 1 880.16 ? C2' ADP 800 W 1 
HETATM 16 O O2' ADP . . . VA 5 246.482 103.694 230.968 1 880.16 ? O2' ADP 800 W 1 
HETATM 17 C C1' ADP . . . VA 5 246.837 105.631 232.373 1 880.16 ? C1' ADP 800 W 1 
HETATM 18 N N9 ADP . . . VA 5 246.673 106.963 231.739 1 880.16 ? N9 ADP 800 W 1 
HETATM 19 C C8 ADP . . . VA 5 247.431 108.049 231.978 1 880.16 ? C8 ADP 800 W 1 
HETATM 20 N N7 ADP . . . VA 5 247.016 109.109 231.237 1 880.16 ? N7 ADP 800 W 1 
HETATM 21 C C5 ADP . . . VA 5 245.965 108.701 230.502 1 880.16 ? C5 ADP 800 W 1 
HETATM 22 C C6 ADP . . . VA 5 245.054 109.315 229.508 1 880.16 ? C6 ADP 800 W 1 
HETATM 23 N N6 ADP . . . VA 5 245.188 110.612 229.141 1 880.16 ? N6 ADP 800 W 1 
HETATM 24 N N1 ADP . . . VA 5 244.083 108.536 228.979 1 880.16 ? N1 ADP 800 W 1 
HETATM 25 C C2 ADP . . . VA 5 243.939 107.246 229.334 1 880.16 ? C2 ADP 800 W 1 
HETATM 26 N N3 ADP . . . VA 5 244.728 106.625 230.229 1 880.16 ? N3 ADP 800 W 1 
HETATM 27 C C4 ADP . . . VA 5 245.741 107.286 230.839 1 880.16 ? C4 ADP 800 W 1 
#
_model_server_stats.io_time_ms              228 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    240 
_model_server_stats.query_time_ms           482 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           27 
#