data_6Q7M # _model_server_result.job_id j5q5-WhS-B7CY6I4G7QXyg _model_server_result.datetime_utc '2025-03-06 01:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":800}' # _entry.id 6Q7M # _exptl.entry_id 6Q7M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q7M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 26-meric _pdbx_struct_assembly.oligomeric_count 26 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 UA N N ? 4 VA N N ? 4 WA N N ? 4 XA N N ? 4 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 367 A LYS 367 1_555 AA C4A PLP . A PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B NZ LYS 367 B LYS 367 1_555 BA C4A PLP . B PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 C NZ LYS 367 C LYS 367 1_555 CA C4A PLP . C PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 D NZ LYS 367 D LYS 367 1_555 DA C4A PLP . D PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 E NZ LYS 367 E LYS 367 1_555 EA C4A PLP . E PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 F NZ LYS 367 F LYS 367 1_555 FA C4A PLP . F PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 G NZ LYS 367 G LYS 367 1_555 GA C4A PLP . G PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 H NZ LYS 367 H LYS 367 1_555 HA C4A PLP . H PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 I NZ LYS 367 I LYS 367 1_555 IA C4A PLP . I PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 J NZ LYS 367 J LYS 367 1_555 JA C4A PLP . J PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale11 K NZ LYS 367 K LYS 367 1_555 KA C4A PLP . K PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale12 L NZ LYS 367 L LYS 367 1_555 LA C4A PLP . L PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale13 M NZ LYS 367 M LYS 367 1_555 MA C4A PLP . M PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale14 N NZ LYS 367 N LYS 367 1_555 NA C4A PLP . N PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale15 O NZ LYS 367 O LYS 367 1_555 OA C4A PLP . O PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale16 P NZ LYS 367 P LYS 367 1_555 PA C4A PLP . P PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale17 Q NZ LYS 367 Q LYS 367 1_555 QA C4A PLP . Q PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale18 R NZ LYS 367 R LYS 367 1_555 RA C4A PLP . R PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale19 S NZ LYS 367 S LYS 367 1_555 SA C4A PLP . S PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale20 T NZ LYS 367 T LYS 367 1_555 TA C4A PLP . T PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Q7M _atom_sites.fract_transf_matrix[1][1] 0.002066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code AA 3 PLP A 1 801 367 PLP LLP . BA 3 PLP B 1 801 367 PLP LLP . CA 3 PLP C 1 801 367 PLP LLP . DA 3 PLP D 1 801 367 PLP LLP . EA 3 PLP E 1 801 367 PLP LLP . FA 3 PLP F 1 801 367 PLP LLP . GA 3 PLP G 1 801 367 PLP LLP . HA 3 PLP H 1 801 367 PLP LLP . IA 3 PLP I 1 801 367 PLP LLP . JA 3 PLP J 1 801 367 PLP LLP . KA 3 PLP K 1 801 367 PLP LLP . LA 3 PLP L 1 801 367 PLP LLP . MA 3 PLP M 1 801 367 PLP LLP . NA 3 PLP N 1 801 367 PLP LLP . OA 3 PLP O 1 801 367 PLP LLP . PA 3 PLP P 1 801 367 PLP LLP . QA 3 PLP Q 1 801 367 PLP LLP . RA 3 PLP R 1 801 367 PLP LLP . SA 3 PLP S 1 801 367 PLP LLP . TA 3 PLP T 1 801 367 PLP LLP . UA 4 ADP V 1 800 800 ADP ADP . VA 4 ADP W 1 800 800 ADP ADP . WA 4 ADP X 1 800 800 ADP ADP . XA 4 ADP Y 1 800 800 ADP ADP . YA 4 ADP Z 1 800 800 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . VA 4 257.875 102.563 240.582 1 523.64 ? PB ADP 800 W 1 HETATM 2 O O1B ADP . . . VA 4 257.259 103.564 239.634 1 523.64 -1 O1B ADP 800 W 1 HETATM 3 O O2B ADP . . . VA 4 259.078 101.839 240.027 1 523.64 ? O2B ADP 800 W 1 HETATM 4 O O3B ADP . . . VA 4 258.048 103.069 241.994 1 523.64 ? O3B ADP 800 W 1 HETATM 5 P PA ADP . . . VA 4 257.017 100.105 241.612 1 523.64 ? PA ADP 800 W 1 HETATM 6 O O1A ADP . . . VA 4 258.071 99.264 240.931 1 523.64 -1 O1A ADP 800 W 1 HETATM 7 O O2A ADP . . . VA 4 257.215 100.549 243.041 1 523.64 ? O2A ADP 800 W 1 HETATM 8 O O3A ADP . . . VA 4 256.755 101.413 240.71 1 523.64 ? O3A ADP 800 W 1 HETATM 9 O O5' ADP . . . VA 4 255.612 99.325 241.517 1 523.64 ? O5' ADP 800 W 1 HETATM 10 C C5' ADP . . . VA 4 255.311 98.262 242.419 1 523.64 ? C5' ADP 800 W 1 HETATM 11 C C4' ADP . . . VA 4 253.985 97.622 242.029 1 523.64 ? C4' ADP 800 W 1 HETATM 12 O O4' ADP . . . VA 4 252.958 98.613 241.937 1 523.64 ? O4' ADP 800 W 1 HETATM 13 C C3' ADP . . . VA 4 254.071 96.94 240.674 1 523.64 ? C3' ADP 800 W 1 HETATM 14 O O3' ADP . . . VA 4 254.036 95.519 240.835 1 523.64 ? O3' ADP 800 W 1 HETATM 15 C C2' ADP . . . VA 4 252.854 97.405 239.899 1 523.64 ? C2' ADP 800 W 1 HETATM 16 O O2' ADP . . . VA 4 252.037 96.285 239.549 1 523.64 ? O2' ADP 800 W 1 HETATM 17 C C1' ADP . . . VA 4 252.094 98.334 240.832 1 523.64 ? C1' ADP 800 W 1 HETATM 18 N N9 ADP . . . VA 4 251.752 99.589 240.117 1 523.64 ? N9 ADP 800 W 1 HETATM 19 C C8 ADP . . . VA 4 252.355 100.781 240.282 1 523.64 ? C8 ADP 800 W 1 HETATM 20 N N7 ADP . . . VA 4 251.803 101.725 239.479 1 523.64 ? N7 ADP 800 W 1 HETATM 21 C C5 ADP . . . VA 4 250.819 101.134 238.777 1 523.64 ? C5 ADP 800 W 1 HETATM 22 C C6 ADP . . . VA 4 249.836 101.555 237.75 1 523.64 ? C6 ADP 800 W 1 HETATM 23 N N6 ADP . . . VA 4 249.795 102.833 237.303 1 523.64 ? N6 ADP 800 W 1 HETATM 24 N N1 ADP . . . VA 4 248.982 100.62 237.276 1 523.64 ? N1 ADP 800 W 1 HETATM 25 C C2 ADP . . . VA 4 249.013 99.347 237.712 1 523.64 ? C2 ADP 800 W 1 HETATM 26 N N3 ADP . . . VA 4 249.876 98.897 238.64 1 523.64 ? N3 ADP 800 W 1 HETATM 27 C C4 ADP . . . VA 4 250.788 99.726 239.202 1 523.64 ? C4 ADP 800 W 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 115 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #