data_6Q7M # _model_server_result.job_id BspN1qRXRP0pFrLVoZBamQ _model_server_result.datetime_utc '2025-03-06 01:01:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":801}' # _entry.id 6Q7M # _exptl.entry_id 6Q7M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q7M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 26-meric _pdbx_struct_assembly.oligomeric_count 26 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N ? 3 QA N N ? 3 RA N N ? 3 SA N N ? 3 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 367 A LYS 367 1_555 AA C4A PLP . A PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B NZ LYS 367 B LYS 367 1_555 BA C4A PLP . B PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 C NZ LYS 367 C LYS 367 1_555 CA C4A PLP . C PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 D NZ LYS 367 D LYS 367 1_555 DA C4A PLP . D PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 E NZ LYS 367 E LYS 367 1_555 EA C4A PLP . E PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 F NZ LYS 367 F LYS 367 1_555 FA C4A PLP . F PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 G NZ LYS 367 G LYS 367 1_555 GA C4A PLP . G PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 H NZ LYS 367 H LYS 367 1_555 HA C4A PLP . H PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 I NZ LYS 367 I LYS 367 1_555 IA C4A PLP . I PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 J NZ LYS 367 J LYS 367 1_555 JA C4A PLP . J PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale11 K NZ LYS 367 K LYS 367 1_555 KA C4A PLP . K PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale12 L NZ LYS 367 L LYS 367 1_555 LA C4A PLP . L PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale13 M NZ LYS 367 M LYS 367 1_555 MA C4A PLP . M PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale14 N NZ LYS 367 N LYS 367 1_555 NA C4A PLP . N PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale15 O NZ LYS 367 O LYS 367 1_555 OA C4A PLP . O PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale16 P NZ LYS 367 P LYS 367 1_555 PA C4A PLP . P PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale17 Q NZ LYS 367 Q LYS 367 1_555 QA C4A PLP . Q PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale18 R NZ LYS 367 R LYS 367 1_555 RA C4A PLP . R PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale19 S NZ LYS 367 S LYS 367 1_555 SA C4A PLP . S PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale20 T NZ LYS 367 T LYS 367 1_555 TA C4A PLP . T PLP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6Q7M _atom_sites.fract_transf_matrix[1][1] 0.002066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code AA 3 PLP A 1 801 367 PLP LLP . BA 3 PLP B 1 801 367 PLP LLP . CA 3 PLP C 1 801 367 PLP LLP . DA 3 PLP D 1 801 367 PLP LLP . EA 3 PLP E 1 801 367 PLP LLP . FA 3 PLP F 1 801 367 PLP LLP . GA 3 PLP G 1 801 367 PLP LLP . HA 3 PLP H 1 801 367 PLP LLP . IA 3 PLP I 1 801 367 PLP LLP . JA 3 PLP J 1 801 367 PLP LLP . KA 3 PLP K 1 801 367 PLP LLP . LA 3 PLP L 1 801 367 PLP LLP . MA 3 PLP M 1 801 367 PLP LLP . NA 3 PLP N 1 801 367 PLP LLP . OA 3 PLP O 1 801 367 PLP LLP . PA 3 PLP P 1 801 367 PLP LLP . QA 3 PLP Q 1 801 367 PLP LLP . RA 3 PLP R 1 801 367 PLP LLP . SA 3 PLP S 1 801 367 PLP LLP . TA 3 PLP T 1 801 367 PLP LLP . UA 4 ADP V 1 800 800 ADP ADP . VA 4 ADP W 1 800 800 ADP ADP . WA 4 ADP X 1 800 800 ADP ADP . XA 4 ADP Y 1 800 800 ADP ADP . YA 4 ADP Z 1 800 800 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . OA 3 195.9 194.746 329.309 1 404.63 ? N1 PLP 801 O 1 HETATM 2 C C2 PLP . . . OA 3 195.817 195.599 330.336 1 404.63 ? C2 PLP 801 O 1 HETATM 3 C C2A PLP . . . OA 3 195.392 195.089 331.746 1 404.63 ? C2A PLP 801 O 1 HETATM 4 C C3 PLP . . . OA 3 196.118 196.976 330.142 1 404.63 ? C3 PLP 801 O 1 HETATM 5 O O3 PLP . . . OA 3 196.031 197.869 331.219 1 404.63 ? O3 PLP 801 O 1 HETATM 6 C C4 PLP . . . OA 3 196.495 197.436 328.902 1 404.63 ? C4 PLP 801 O 1 HETATM 7 C C4A PLP . . . OA 3 196.83 199.004 328.703 1 404.63 ? C4A PLP 801 O 1 HETATM 8 C C5 PLP . . . OA 3 196.579 196.571 327.853 1 404.63 ? C5 PLP 801 O 1 HETATM 9 C C6 PLP . . . OA 3 196.283 195.211 328.041 1 404.63 ? C6 PLP 801 O 1 HETATM 10 C C5A PLP . . . OA 3 197.005 197.082 326.44 1 404.63 ? C5A PLP 801 O 1 HETATM 11 O O4P PLP . . . OA 3 198.397 197.313 326.425 1 404.63 ? O4P PLP 801 O 1 HETATM 12 P P PLP . . . OA 3 199.118 197.442 325.065 1 404.63 ? P PLP 801 O 1 HETATM 13 O O1P PLP . . . OA 3 198.572 196.431 324.116 1 404.63 ? O1P PLP 801 O 1 HETATM 14 O O2P PLP . . . OA 3 200.623 197.205 325.256 1 404.63 -1 O2P PLP 801 O 1 HETATM 15 O O3P PLP . . . OA 3 198.897 198.796 324.518 1 404.63 ? O3P PLP 801 O 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 439 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #