data_6Q8B
#
_model_server_result.job_id            bjimVi7usqqIXtq2PEtTUg 
_model_server_result.datetime_utc      '2024-12-24 17:40:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":903}' 
#
_entry.id    6Q8B 
#
_exptl.entry_id    6Q8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q8B 
_cell.length_a            49.059 
_cell.length_b            81.998 
_cell.length_c            226.159 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 450 A CYS 449 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc2 A SG CYS 453 A CYS 452 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc3 A SG CYS 491 A CYS 490 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc4 A SG CYS 494 A CYS 493 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc5 F MG MG . A MG 905 1_555 G O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc6 F MG MG . A MG 905 1_555 G O HOH . A HOH 1038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc7 F MG MG . A MG 905 1_555 G O HOH . A HOH 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc8 F MG MG . A MG 905 1_555 G O HOH . A HOH 1161 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc9 F MG MG . A MG 905 1_555 G O HOH . A HOH 1180 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc10 F MG MG . A MG 905 1_555 G O HOH . A HOH 1184 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6Q8B 
_atom_sites.fract_transf_matrix[1][1]    0.020384 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 L3U A 1 901 901 L3U L3U . 
C 3 ZN A 1 902 1 ZN ZN . 
D 4 EDO A 1 903 2 EDO EDO . 
E 4 EDO A 1 904 4 EDO EDO . 
F 5 MG A 1 905 1 MG MG . 
G 6 HOH A 1 1001 122 HOH HOH . 
G 6 HOH A 2 1002 244 HOH HOH . 
G 6 HOH A 3 1003 104 HOH HOH . 
G 6 HOH A 4 1004 56 HOH HOH . 
G 6 HOH A 5 1005 119 HOH HOH . 
G 6 HOH A 6 1006 103 HOH HOH . 
G 6 HOH A 7 1007 211 HOH HOH . 
G 6 HOH A 8 1008 141 HOH HOH . 
G 6 HOH A 9 1009 48 HOH HOH . 
G 6 HOH A 10 1010 170 HOH HOH . 
G 6 HOH A 11 1011 63 HOH HOH . 
G 6 HOH A 12 1012 28 HOH HOH . 
G 6 HOH A 13 1013 41 HOH HOH . 
G 6 HOH A 14 1014 225 HOH HOH . 
G 6 HOH A 15 1015 212 HOH HOH . 
G 6 HOH A 16 1016 87 HOH HOH . 
G 6 HOH A 17 1017 79 HOH HOH . 
G 6 HOH A 18 1018 31 HOH HOH . 
G 6 HOH A 19 1019 132 HOH HOH . 
G 6 HOH A 20 1020 70 HOH HOH . 
G 6 HOH A 21 1021 139 HOH HOH . 
G 6 HOH A 22 1022 40 HOH HOH . 
G 6 HOH A 23 1023 13 HOH HOH . 
G 6 HOH A 24 1024 55 HOH HOH . 
G 6 HOH A 25 1025 5 HOH HOH . 
G 6 HOH A 26 1026 3 HOH HOH . 
G 6 HOH A 27 1027 30 HOH HOH . 
G 6 HOH A 28 1028 177 HOH HOH . 
G 6 HOH A 29 1029 146 HOH HOH . 
G 6 HOH A 30 1030 80 HOH HOH . 
G 6 HOH A 31 1031 8 HOH HOH . 
G 6 HOH A 32 1032 101 HOH HOH . 
G 6 HOH A 33 1033 32 HOH HOH . 
G 6 HOH A 34 1034 50 HOH HOH . 
G 6 HOH A 35 1035 44 HOH HOH . 
G 6 HOH A 36 1036 165 HOH HOH . 
G 6 HOH A 37 1037 1 HOH HOH . 
G 6 HOH A 38 1038 118 HOH HOH . 
G 6 HOH A 39 1039 52 HOH HOH . 
G 6 HOH A 40 1040 24 HOH HOH . 
G 6 HOH A 41 1041 64 HOH HOH . 
G 6 HOH A 42 1042 37 HOH HOH . 
G 6 HOH A 43 1043 19 HOH HOH . 
G 6 HOH A 44 1044 236 HOH HOH . 
G 6 HOH A 45 1045 46 HOH HOH . 
G 6 HOH A 46 1046 208 HOH HOH . 
G 6 HOH A 47 1047 26 HOH HOH . 
G 6 HOH A 48 1048 16 HOH HOH . 
G 6 HOH A 49 1049 137 HOH HOH . 
G 6 HOH A 50 1050 116 HOH HOH . 
G 6 HOH A 51 1051 51 HOH HOH . 
G 6 HOH A 52 1052 111 HOH HOH . 
G 6 HOH A 53 1053 117 HOH HOH . 
G 6 HOH A 54 1054 36 HOH HOH . 
G 6 HOH A 55 1055 68 HOH HOH . 
G 6 HOH A 56 1056 15 HOH HOH . 
G 6 HOH A 57 1057 159 HOH HOH . 
G 6 HOH A 58 1058 129 HOH HOH . 
G 6 HOH A 59 1059 35 HOH HOH . 
G 6 HOH A 60 1060 25 HOH HOH . 
G 6 HOH A 61 1061 179 HOH HOH . 
G 6 HOH A 62 1062 74 HOH HOH . 
G 6 HOH A 63 1063 11 HOH HOH . 
G 6 HOH A 64 1064 99 HOH HOH . 
G 6 HOH A 65 1065 235 HOH HOH . 
G 6 HOH A 66 1066 2 HOH HOH . 
G 6 HOH A 67 1067 189 HOH HOH . 
G 6 HOH A 68 1068 106 HOH HOH . 
G 6 HOH A 69 1069 158 HOH HOH . 
G 6 HOH A 70 1070 38 HOH HOH . 
G 6 HOH A 71 1071 20 HOH HOH . 
G 6 HOH A 72 1072 199 HOH HOH . 
G 6 HOH A 73 1073 47 HOH HOH . 
G 6 HOH A 74 1074 60 HOH HOH . 
G 6 HOH A 75 1075 109 HOH HOH . 
G 6 HOH A 76 1076 143 HOH HOH . 
G 6 HOH A 77 1077 72 HOH HOH . 
G 6 HOH A 78 1078 123 HOH HOH . 
G 6 HOH A 79 1079 18 HOH HOH . 
G 6 HOH A 80 1080 65 HOH HOH . 
G 6 HOH A 81 1081 161 HOH HOH . 
G 6 HOH A 82 1082 239 HOH HOH . 
G 6 HOH A 83 1083 203 HOH HOH . 
G 6 HOH A 84 1084 78 HOH HOH . 
G 6 HOH A 85 1085 115 HOH HOH . 
G 6 HOH A 86 1086 22 HOH HOH . 
G 6 HOH A 87 1087 59 HOH HOH . 
G 6 HOH A 88 1088 220 HOH HOH . 
G 6 HOH A 89 1089 138 HOH HOH . 
G 6 HOH A 90 1090 92 HOH HOH . 
G 6 HOH A 91 1091 21 HOH HOH . 
G 6 HOH A 92 1092 43 HOH HOH . 
G 6 HOH A 93 1093 219 HOH HOH . 
G 6 HOH A 94 1094 42 HOH HOH . 
G 6 HOH A 95 1095 210 HOH HOH . 
G 6 HOH A 96 1096 45 HOH HOH . 
G 6 HOH A 97 1097 153 HOH HOH . 
G 6 HOH A 98 1098 243 HOH HOH . 
G 6 HOH A 99 1099 223 HOH HOH . 
G 6 HOH A 100 1100 88 HOH HOH . 
G 6 HOH A 101 1101 182 HOH HOH . 
G 6 HOH A 102 1102 54 HOH HOH . 
G 6 HOH A 103 1103 6 HOH HOH . 
G 6 HOH A 104 1104 29 HOH HOH . 
G 6 HOH A 105 1105 142 HOH HOH . 
G 6 HOH A 106 1106 168 HOH HOH . 
G 6 HOH A 107 1107 113 HOH HOH . 
G 6 HOH A 108 1108 204 HOH HOH . 
G 6 HOH A 109 1109 234 HOH HOH . 
G 6 HOH A 110 1110 49 HOH HOH . 
G 6 HOH A 111 1111 94 HOH HOH . 
G 6 HOH A 112 1112 167 HOH HOH . 
G 6 HOH A 113 1113 73 HOH HOH . 
G 6 HOH A 114 1114 98 HOH HOH . 
G 6 HOH A 115 1115 196 HOH HOH . 
G 6 HOH A 116 1116 14 HOH HOH . 
G 6 HOH A 117 1117 17 HOH HOH . 
G 6 HOH A 118 1118 84 HOH HOH . 
G 6 HOH A 119 1119 154 HOH HOH . 
G 6 HOH A 120 1120 102 HOH HOH . 
G 6 HOH A 121 1121 76 HOH HOH . 
G 6 HOH A 122 1122 166 HOH HOH . 
G 6 HOH A 123 1123 152 HOH HOH . 
G 6 HOH A 124 1124 58 HOH HOH . 
G 6 HOH A 125 1125 201 HOH HOH . 
G 6 HOH A 126 1126 7 HOH HOH . 
G 6 HOH A 127 1127 33 HOH HOH . 
G 6 HOH A 128 1128 180 HOH HOH . 
G 6 HOH A 129 1129 86 HOH HOH . 
G 6 HOH A 130 1130 188 HOH HOH . 
G 6 HOH A 131 1131 178 HOH HOH . 
G 6 HOH A 132 1132 97 HOH HOH . 
G 6 HOH A 133 1133 9 HOH HOH . 
G 6 HOH A 134 1134 39 HOH HOH . 
G 6 HOH A 135 1135 202 HOH HOH . 
G 6 HOH A 136 1136 184 HOH HOH . 
G 6 HOH A 137 1137 57 HOH HOH . 
G 6 HOH A 138 1138 145 HOH HOH . 
G 6 HOH A 139 1139 237 HOH HOH . 
G 6 HOH A 140 1140 34 HOH HOH . 
G 6 HOH A 141 1141 67 HOH HOH . 
G 6 HOH A 142 1142 197 HOH HOH . 
G 6 HOH A 143 1143 10 HOH HOH . 
G 6 HOH A 144 1144 112 HOH HOH . 
G 6 HOH A 145 1145 218 HOH HOH . 
G 6 HOH A 146 1146 81 HOH HOH . 
G 6 HOH A 147 1147 96 HOH HOH . 
G 6 HOH A 148 1148 147 HOH HOH . 
G 6 HOH A 149 1149 12 HOH HOH . 
G 6 HOH A 150 1150 128 HOH HOH . 
G 6 HOH A 151 1151 222 HOH HOH . 
G 6 HOH A 152 1152 214 HOH HOH . 
G 6 HOH A 153 1153 238 HOH HOH . 
G 6 HOH A 154 1154 90 HOH HOH . 
G 6 HOH A 155 1155 135 HOH HOH . 
G 6 HOH A 156 1156 69 HOH HOH . 
G 6 HOH A 157 1157 91 HOH HOH . 
G 6 HOH A 158 1158 110 HOH HOH . 
G 6 HOH A 159 1159 226 HOH HOH . 
G 6 HOH A 160 1160 107 HOH HOH . 
G 6 HOH A 161 1161 241 HOH HOH . 
G 6 HOH A 162 1162 181 HOH HOH . 
G 6 HOH A 163 1163 192 HOH HOH . 
G 6 HOH A 164 1164 95 HOH HOH . 
G 6 HOH A 165 1165 121 HOH HOH . 
G 6 HOH A 166 1166 134 HOH HOH . 
G 6 HOH A 167 1167 133 HOH HOH . 
G 6 HOH A 168 1168 190 HOH HOH . 
G 6 HOH A 169 1169 61 HOH HOH . 
G 6 HOH A 170 1170 108 HOH HOH . 
G 6 HOH A 171 1171 207 HOH HOH . 
G 6 HOH A 172 1172 213 HOH HOH . 
G 6 HOH A 173 1173 200 HOH HOH . 
G 6 HOH A 174 1174 194 HOH HOH . 
G 6 HOH A 175 1175 62 HOH HOH . 
G 6 HOH A 176 1176 27 HOH HOH . 
G 6 HOH A 177 1177 224 HOH HOH . 
G 6 HOH A 178 1178 232 HOH HOH . 
G 6 HOH A 179 1179 85 HOH HOH . 
G 6 HOH A 180 1180 242 HOH HOH . 
G 6 HOH A 181 1181 233 HOH HOH . 
G 6 HOH A 182 1182 228 HOH HOH . 
G 6 HOH A 183 1183 127 HOH HOH . 
G 6 HOH A 184 1184 240 HOH HOH . 
G 6 HOH A 185 1185 205 HOH HOH . 
G 6 HOH A 186 1186 156 HOH HOH . 
G 6 HOH A 187 1187 93 HOH HOH . 
G 6 HOH A 188 1188 148 HOH HOH . 
G 6 HOH A 189 1189 185 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -8.553 8.766 -46.358 1 54.28 ? C1 EDO 903 A 1 
HETATM 2 O O1 EDO . . . D 4 -9.421 8.447 -45.263 1 45.91 ? O1 EDO 903 A 1 
HETATM 3 C C2 EDO . . . D 4 -9.252 8.45 -47.678 1 55.57 ? C2 EDO 903 A 1 
HETATM 4 O O2 EDO . . . D 4 -10.544 9.073 -47.668 1 56.79 ? O2 EDO 903 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#