data_6Q8H # _model_server_result.job_id '_o93su9sO08KikB83R5LVw' _model_server_result.datetime_utc '2024-10-14 00:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6Q8H # _exptl.entry_id 6Q8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Q8H _cell.length_a 131.522 _cell.length_b 131.522 _cell.length_c 49.92 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C DLE 1 B DLE 2 1_555 B N DLE 2 B DLE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C DLE 2 B DLE 3 1_555 B N DLY 3 B DLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C DLY 3 B DLY 4 1_555 B N DAL 4 B DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C DAL 4 B DAL 5 1_555 B N DLE 5 B DLE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C DLE 5 B DLE 6 1_555 B N DLY 6 B DLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C DLY 6 B DLY 7 1_555 B N DLY 7 B DLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C DLY 7 B DLY 8 1_555 B N DLE 8 B DLE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C DLE 8 B DLE 9 1_555 B N DAL 9 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C DAL 9 B DAL 10 1_555 B N DLY 10 B DLY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C DLY 10 B DLY 11 1_555 B N DLY 11 B DLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C DLY 11 B DLY 12 1_555 B N DTY 12 B DTY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 B C DTY 12 B DTY 13 1_555 B N DLY 13 B DLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C DLY 13 B DLY 14 1_555 G N NH2 . B NH2 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 C C DLE 1 C DLE 2 1_555 C N DLE 2 C DLE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 C C DLE 2 C DLE 3 1_555 C N DLY 3 C DLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 C C DLY 3 C DLY 4 1_555 C N DAL 4 C DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 C C DAL 4 C DAL 5 1_555 C N DLE 5 C DLE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 C C DLE 5 C DLE 6 1_555 C N DLY 6 C DLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 C C DLY 6 C DLY 7 1_555 C N DLY 7 C DLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 C C DLY 7 C DLY 8 1_555 C N DLE 8 C DLE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 C C DLE 8 C DLE 9 1_555 C N DAL 9 C DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 C C DAL 9 C DAL 10 1_555 C N DLY 10 C DLY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 C C DLY 10 C DLY 11 1_555 C N DLY 11 C DLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 C C DLY 11 C DLY 12 1_555 C N DTY 12 C DTY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale25 C C DTY 12 C DTY 13 1_555 C N DLY 13 C DLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 C C DLY 13 C DLY 14 1_555 I N NH2 . C NH2 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A O ASN 21 A ASN 21 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A OE1 GLU 95 A GLU 95 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A OE2 GLU 95 A GLU 95 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 A OD1 ASP 99 A ASP 99 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc5 A OD1 ASP 101 A ASP 101 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 A OD2 ASP 101 A ASP 101 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc7 A OD1 ASN 103 A ASN 103 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 A OD1 ASP 104 A ASP 104 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc9 A OD2 ASP 104 A ASP 104 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc10 A OD1 ASP 104 A ASP 104 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc11 A O GLY 114 A GLY 114 1_555 E CA CA . A CA 302 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc12 D CA CA . A CA 301 1_555 F O3 ZDC . B ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc13 D CA CA . A CA 301 1_555 F O4 ZDC . B ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc14 E CA CA . A CA 302 1_555 F O2 ZDC . B ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc15 E CA CA . A CA 302 1_555 F O3 ZDC . B ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Q8H _atom_sites.fract_transf_matrix[1][1] 0.007603 _atom_sites.fract_transf_matrix[1][2] 0.00439 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 301 301 CA CA . E 3 CA A 1 302 302 CA CA . F 4 ZDC B 1 101 1 ZDC FUD . G 5 NH2 B 1 102 15 NH2 NH2 . H 4 ZDC C 1 101 1 ZDC FUD . I 5 NH2 C 1 102 15 NH2 NH2 . J 6 HOH A 1 401 55 HOH HOH . J 6 HOH A 2 402 58 HOH HOH . J 6 HOH A 3 403 136 HOH HOH . J 6 HOH A 4 404 135 HOH HOH . J 6 HOH A 5 405 70 HOH HOH . J 6 HOH A 6 406 104 HOH HOH . J 6 HOH A 7 407 51 HOH HOH . J 6 HOH A 8 408 64 HOH HOH . J 6 HOH A 9 409 44 HOH HOH . J 6 HOH A 10 410 153 HOH HOH . J 6 HOH A 11 411 138 HOH HOH . J 6 HOH A 12 412 5 HOH HOH . J 6 HOH A 13 413 42 HOH HOH . J 6 HOH A 14 414 49 HOH HOH . J 6 HOH A 15 415 33 HOH HOH . J 6 HOH A 16 416 78 HOH HOH . J 6 HOH A 17 417 73 HOH HOH . J 6 HOH A 18 418 76 HOH HOH . J 6 HOH A 19 419 20 HOH HOH . J 6 HOH A 20 420 34 HOH HOH . J 6 HOH A 21 421 14 HOH HOH . J 6 HOH A 22 422 30 HOH HOH . J 6 HOH A 23 423 22 HOH HOH . J 6 HOH A 24 424 35 HOH HOH . J 6 HOH A 25 425 114 HOH HOH . J 6 HOH A 26 426 158 HOH HOH . J 6 HOH A 27 427 92 HOH HOH . J 6 HOH A 28 428 67 HOH HOH . J 6 HOH A 29 429 6 HOH HOH . J 6 HOH A 30 430 112 HOH HOH . J 6 HOH A 31 431 43 HOH HOH . J 6 HOH A 32 432 109 HOH HOH . J 6 HOH A 33 433 37 HOH HOH . J 6 HOH A 34 434 71 HOH HOH . J 6 HOH A 35 435 7 HOH HOH . J 6 HOH A 36 436 111 HOH HOH . J 6 HOH A 37 437 8 HOH HOH . J 6 HOH A 38 438 24 HOH HOH . J 6 HOH A 39 439 11 HOH HOH . J 6 HOH A 40 440 56 HOH HOH . J 6 HOH A 41 441 118 HOH HOH . J 6 HOH A 42 442 172 HOH HOH . J 6 HOH A 43 443 132 HOH HOH . J 6 HOH A 44 444 15 HOH HOH . J 6 HOH A 45 445 60 HOH HOH . J 6 HOH A 46 446 152 HOH HOH . J 6 HOH A 47 447 88 HOH HOH . J 6 HOH A 48 448 13 HOH HOH . J 6 HOH A 49 449 1 HOH HOH . J 6 HOH A 50 450 12 HOH HOH . J 6 HOH A 51 451 3 HOH HOH . J 6 HOH A 52 452 26 HOH HOH . J 6 HOH A 53 453 41 HOH HOH . J 6 HOH A 54 454 50 HOH HOH . J 6 HOH A 55 455 115 HOH HOH . J 6 HOH A 56 456 140 HOH HOH . J 6 HOH A 57 457 2 HOH HOH . J 6 HOH A 58 458 54 HOH HOH . J 6 HOH A 59 459 65 HOH HOH . J 6 HOH A 60 460 59 HOH HOH . J 6 HOH A 61 461 84 HOH HOH . J 6 HOH A 62 462 17 HOH HOH . J 6 HOH A 63 463 28 HOH HOH . J 6 HOH A 64 464 19 HOH HOH . J 6 HOH A 65 465 151 HOH HOH . J 6 HOH A 66 466 16 HOH HOH . J 6 HOH A 67 467 119 HOH HOH . J 6 HOH A 68 468 120 HOH HOH . J 6 HOH A 69 469 10 HOH HOH . J 6 HOH A 70 470 61 HOH HOH . J 6 HOH A 71 471 68 HOH HOH . J 6 HOH A 72 472 154 HOH HOH . J 6 HOH A 73 473 75 HOH HOH . J 6 HOH A 74 474 9 HOH HOH . J 6 HOH A 75 475 45 HOH HOH . J 6 HOH A 76 476 106 HOH HOH . J 6 HOH A 77 477 97 HOH HOH . J 6 HOH A 78 478 27 HOH HOH . J 6 HOH A 79 479 40 HOH HOH . J 6 HOH A 80 480 63 HOH HOH . J 6 HOH A 81 481 69 HOH HOH . J 6 HOH A 82 482 100 HOH HOH . J 6 HOH A 83 483 122 HOH HOH . J 6 HOH A 84 484 149 HOH HOH . J 6 HOH A 85 485 126 HOH HOH . J 6 HOH A 86 486 47 HOH HOH . J 6 HOH A 87 487 156 HOH HOH . J 6 HOH A 88 488 146 HOH HOH . J 6 HOH A 89 489 133 HOH HOH . J 6 HOH A 90 490 38 HOH HOH . J 6 HOH A 91 491 129 HOH HOH . J 6 HOH A 92 492 25 HOH HOH . J 6 HOH A 93 493 79 HOH HOH . J 6 HOH A 94 494 18 HOH HOH . J 6 HOH A 95 495 107 HOH HOH . J 6 HOH A 96 496 62 HOH HOH . J 6 HOH A 97 497 108 HOH HOH . J 6 HOH A 98 498 148 HOH HOH . J 6 HOH A 99 499 142 HOH HOH . J 6 HOH A 100 500 141 HOH HOH . J 6 HOH A 101 501 90 HOH HOH . J 6 HOH A 102 502 163 HOH HOH . J 6 HOH A 103 503 159 HOH HOH . J 6 HOH A 104 504 147 HOH HOH . J 6 HOH A 105 505 177 HOH HOH . J 6 HOH A 106 506 85 HOH HOH . J 6 HOH A 107 507 169 HOH HOH . J 6 HOH A 108 508 89 HOH HOH . J 6 HOH A 109 509 128 HOH HOH . J 6 HOH A 110 510 123 HOH HOH . J 6 HOH A 111 511 127 HOH HOH . J 6 HOH A 112 512 165 HOH HOH . J 6 HOH A 113 513 103 HOH HOH . J 6 HOH A 114 514 157 HOH HOH . J 6 HOH A 115 515 164 HOH HOH . J 6 HOH A 116 516 29 HOH HOH . J 6 HOH A 117 517 82 HOH HOH . J 6 HOH A 118 518 87 HOH HOH . J 6 HOH A 119 519 95 HOH HOH . J 6 HOH A 120 520 160 HOH HOH . J 6 HOH A 121 521 162 HOH HOH . J 6 HOH A 122 522 113 HOH HOH . J 6 HOH A 123 523 144 HOH HOH . J 6 HOH A 124 524 81 HOH HOH . J 6 HOH A 125 525 105 HOH HOH . J 6 HOH A 126 526 66 HOH HOH . J 6 HOH A 127 527 96 HOH HOH . J 6 HOH A 128 528 170 HOH HOH . J 6 HOH A 129 529 102 HOH HOH . J 6 HOH A 130 530 99 HOH HOH . J 6 HOH A 131 531 80 HOH HOH . J 6 HOH A 132 532 86 HOH HOH . J 6 HOH A 133 533 130 HOH HOH . J 6 HOH A 134 534 168 HOH HOH . J 6 HOH A 135 535 98 HOH HOH . J 6 HOH A 136 536 36 HOH HOH . J 6 HOH A 137 537 117 HOH HOH . J 6 HOH A 138 538 139 HOH HOH . J 6 HOH A 139 539 48 HOH HOH . J 6 HOH A 140 540 93 HOH HOH . J 6 HOH A 141 541 121 HOH HOH . J 6 HOH A 142 542 145 HOH HOH . J 6 HOH A 143 543 125 HOH HOH . J 6 HOH A 144 544 116 HOH HOH . J 6 HOH A 145 545 134 HOH HOH . J 6 HOH A 146 546 74 HOH HOH . K 6 HOH B 1 201 174 HOH HOH . K 6 HOH B 2 202 83 HOH HOH . K 6 HOH B 3 203 21 HOH HOH . K 6 HOH B 4 204 4 HOH HOH . K 6 HOH B 5 205 101 HOH HOH . K 6 HOH B 6 206 77 HOH HOH . K 6 HOH B 7 207 131 HOH HOH . K 6 HOH B 8 208 32 HOH HOH . K 6 HOH B 9 209 143 HOH HOH . K 6 HOH B 10 210 31 HOH HOH . K 6 HOH B 11 211 91 HOH HOH . K 6 HOH B 12 212 72 HOH HOH . K 6 HOH B 13 213 124 HOH HOH . K 6 HOH B 14 214 110 HOH HOH . K 6 HOH B 15 215 53 HOH HOH . K 6 HOH B 16 216 137 HOH HOH . K 6 HOH B 17 217 57 HOH HOH . K 6 HOH B 18 218 23 HOH HOH . K 6 HOH B 19 219 150 HOH HOH . K 6 HOH B 20 220 173 HOH HOH . K 6 HOH B 21 221 52 HOH HOH . K 6 HOH B 22 222 166 HOH HOH . K 6 HOH B 23 223 94 HOH HOH . K 6 HOH B 24 224 155 HOH HOH . K 6 HOH B 25 225 171 HOH HOH . K 6 HOH B 26 226 46 HOH HOH . K 6 HOH B 27 227 176 HOH HOH . K 6 HOH B 28 228 39 HOH HOH . L 6 HOH C 1 201 175 HOH HOH . L 6 HOH C 2 202 161 HOH HOH . L 6 HOH C 3 203 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.894 _atom_site.Cartn_y -49.452 _atom_site.Cartn_z 18.017 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #