data_6Q8J # _model_server_result.job_id bn22IyXumek57rjJ-PmunA _model_server_result.datetime_utc '2025-03-13 17:47:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6Q8J # _exptl.entry_id 6Q8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.773 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-~{tert}-butyl-3-[6-(3,5-dimethoxyphenyl)-2-[[1-[1-(phenylmethyl)piperidin-4-yl]-1,2,3-triazol-4-yl]methylamino]pyrido[2,3-d]pyrimidin-7-yl]urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Q8J _cell.length_a 72.193 _cell.length_b 72.193 _cell.length_c 183.164 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -36.0965 -62.520972 30.527333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 182 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 181 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C47 _struct_conn.ptnr2_label_comp_id XS4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XS4 _struct_conn.ptnr2_auth_seq_id 602 _struct_conn.ptnr2_symmetry 5_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.382 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C35 H42 N10 O3' _chem_comp.formula_weight 650.773 _chem_comp.id XS4 _chem_comp.mon_nstd_flag . _chem_comp.name 1-~{tert}-butyl-3-[6-(3,5-dimethoxyphenyl)-2-[[1-[1-(phenylmethyl)piperidin-4-yl]-1,2,3-triazol-4-yl]methylamino]pyrido[2,3-d]pyrimidin-7-yl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C45 O38 XS4 sing 363 n n O38 C30 XS4 sing 364 n n C30 C28 XS4 doub 365 n y C30 C22 XS4 sing 366 n y C28 C29 XS4 sing 367 n y C44 O37 XS4 sing 368 n n C22 C15 XS4 doub 369 n y C29 O37 XS4 sing 370 n n C29 C23 XS4 doub 371 n y C21 N17 XS4 doub 372 n y C21 C13 XS4 sing 373 n y C16 C13 XS4 doub 374 n y C16 C9 XS4 sing 375 n y C23 C15 XS4 sing 376 n y C15 C9 XS4 sing 377 n n N17 C14 XS4 sing 378 n y C13 C6 XS4 sing 379 n y C9 C1 XS4 doub 380 n y N8 C10 XS4 sing 381 n y N8 N2 XS4 doub 382 n y C31 C10 XS4 sing 383 n n C31 N24 XS4 sing 384 n n C14 N24 XS4 sing 385 n n C14 N4 XS4 doub 386 n y C10 C11 XS4 doub 387 n y C6 N4 XS4 sing 388 n y C6 N3 XS4 doub 389 n y N2 N5 XS4 sing 390 n y C1 N3 XS4 sing 391 n y C1 N7 XS4 sing 392 n n N5 C11 XS4 sing 393 n y N5 C19 XS4 sing 394 n n C26 C19 XS4 sing 395 n n C26 C33 XS4 sing 396 n n N7 C12 XS4 sing 397 n n C19 C25 XS4 sing 398 n n C33 N18 XS4 sing 399 n n C12 O27 XS4 doub 400 n n C12 N20 XS4 sing 401 n n N18 C35 XS4 sing 402 n n N18 C34 XS4 sing 403 n n N20 C32 XS4 sing 404 n n C25 C34 XS4 sing 405 n n C42 C47 XS4 doub 406 n y C42 C36 XS4 sing 407 n y C35 C36 XS4 sing 408 n n C47 C48 XS4 sing 409 n y C36 C43 XS4 doub 410 n y C32 C39 XS4 sing 411 n n C32 C40 XS4 sing 412 n n C32 C41 XS4 sing 413 n n C48 C46 XS4 doub 414 n y C43 C46 XS4 sing 415 n y N20 H1 XS4 sing 416 n n C41 H2 XS4 sing 417 n n C41 H3 XS4 sing 418 n n C41 H4 XS4 sing 419 n n C40 H5 XS4 sing 420 n n C40 H6 XS4 sing 421 n n C40 H7 XS4 sing 422 n n C39 H8 XS4 sing 423 n n C39 H9 XS4 sing 424 n n C39 H10 XS4 sing 425 n n N7 H11 XS4 sing 426 n n C23 H12 XS4 sing 427 n n C44 H13 XS4 sing 428 n n C44 H14 XS4 sing 429 n n C44 H15 XS4 sing 430 n n C28 H16 XS4 sing 431 n n C45 H17 XS4 sing 432 n n C45 H18 XS4 sing 433 n n C45 H19 XS4 sing 434 n n C22 H20 XS4 sing 435 n n C16 H21 XS4 sing 436 n n C21 H22 XS4 sing 437 n n N24 H23 XS4 sing 438 n n C31 H24 XS4 sing 439 n n C31 H25 XS4 sing 440 n n C11 H29 XS4 sing 441 n n C19 H31 XS4 sing 442 n n C26 H32 XS4 sing 443 n n C26 H33 XS4 sing 444 n n C33 H34 XS4 sing 445 n n C33 H35 XS4 sing 446 n n C34 H37 XS4 sing 447 n n C34 H38 XS4 sing 448 n n C25 H39 XS4 sing 449 n n C25 H40 XS4 sing 450 n n C35 H41 XS4 sing 451 n n C35 H42 XS4 sing 452 n n C43 H43 XS4 sing 453 n n C46 H44 XS4 sing 454 n n C48 H45 XS4 sing 455 n n C47 H46 XS4 sing 456 n n C42 H47 XS4 sing 457 n n # _atom_sites.entry_id 6Q8J _atom_sites.fract_transf_matrix[1][1] 0.013852 _atom_sites.fract_transf_matrix[1][2] 0.007997 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XS4 A 1 601 1 XS4 XS4 . C 2 XS4 A 1 602 2 XS4 XS4 . D 3 HOH A 1 701 49 HOH HOH . D 3 HOH A 2 702 78 HOH HOH . D 3 HOH A 3 703 48 HOH HOH . D 3 HOH A 4 704 34 HOH HOH . D 3 HOH A 5 705 63 HOH HOH . D 3 HOH A 6 706 40 HOH HOH . D 3 HOH A 7 707 31 HOH HOH . D 3 HOH A 8 708 5 HOH HOH . D 3 HOH A 9 709 39 HOH HOH . D 3 HOH A 10 710 32 HOH HOH . D 3 HOH A 11 711 3 HOH HOH . D 3 HOH A 12 712 13 HOH HOH . D 3 HOH A 13 713 7 HOH HOH . D 3 HOH A 14 714 47 HOH HOH . D 3 HOH A 15 715 17 HOH HOH . D 3 HOH A 16 716 1 HOH HOH . D 3 HOH A 17 717 25 HOH HOH . D 3 HOH A 18 718 102 HOH HOH . D 3 HOH A 19 719 66 HOH HOH . D 3 HOH A 20 720 53 HOH HOH . D 3 HOH A 21 721 2 HOH HOH . D 3 HOH A 22 722 76 HOH HOH . D 3 HOH A 23 723 28 HOH HOH . D 3 HOH A 24 724 30 HOH HOH . D 3 HOH A 25 725 77 HOH HOH . D 3 HOH A 26 726 37 HOH HOH . D 3 HOH A 27 727 18 HOH HOH . D 3 HOH A 28 728 46 HOH HOH . D 3 HOH A 29 729 20 HOH HOH . D 3 HOH A 30 730 16 HOH HOH . D 3 HOH A 31 731 41 HOH HOH . D 3 HOH A 32 732 82 HOH HOH . D 3 HOH A 33 733 14 HOH HOH . D 3 HOH A 34 734 50 HOH HOH . D 3 HOH A 35 735 6 HOH HOH . D 3 HOH A 36 736 79 HOH HOH . D 3 HOH A 37 737 81 HOH HOH . D 3 HOH A 38 738 64 HOH HOH . D 3 HOH A 39 739 10 HOH HOH . D 3 HOH A 40 740 26 HOH HOH . D 3 HOH A 41 741 33 HOH HOH . D 3 HOH A 42 742 44 HOH HOH . D 3 HOH A 43 743 73 HOH HOH . D 3 HOH A 44 744 62 HOH HOH . D 3 HOH A 45 745 11 HOH HOH . D 3 HOH A 46 746 24 HOH HOH . D 3 HOH A 47 747 23 HOH HOH . D 3 HOH A 48 748 70 HOH HOH . D 3 HOH A 49 749 54 HOH HOH . D 3 HOH A 50 750 51 HOH HOH . D 3 HOH A 51 751 61 HOH HOH . D 3 HOH A 52 752 38 HOH HOH . D 3 HOH A 53 753 21 HOH HOH . D 3 HOH A 54 754 90 HOH HOH . D 3 HOH A 55 755 29 HOH HOH . D 3 HOH A 56 756 68 HOH HOH . D 3 HOH A 57 757 9 HOH HOH . D 3 HOH A 58 758 42 HOH HOH . D 3 HOH A 59 759 43 HOH HOH . D 3 HOH A 60 760 88 HOH HOH . D 3 HOH A 61 761 35 HOH HOH . D 3 HOH A 62 762 8 HOH HOH . D 3 HOH A 63 763 101 HOH HOH . D 3 HOH A 64 764 71 HOH HOH . D 3 HOH A 65 765 57 HOH HOH . D 3 HOH A 66 766 12 HOH HOH . D 3 HOH A 67 767 22 HOH HOH . D 3 HOH A 68 768 4 HOH HOH . D 3 HOH A 69 769 59 HOH HOH . D 3 HOH A 70 770 89 HOH HOH . D 3 HOH A 71 771 65 HOH HOH . D 3 HOH A 72 772 60 HOH HOH . D 3 HOH A 73 773 56 HOH HOH . D 3 HOH A 74 774 95 HOH HOH . D 3 HOH A 75 775 74 HOH HOH . D 3 HOH A 76 776 19 HOH HOH . D 3 HOH A 77 777 97 HOH HOH . D 3 HOH A 78 778 83 HOH HOH . D 3 HOH A 79 779 69 HOH HOH . D 3 HOH A 80 780 58 HOH HOH . D 3 HOH A 81 781 96 HOH HOH . D 3 HOH A 82 782 91 HOH HOH . D 3 HOH A 83 783 99 HOH HOH . D 3 HOH A 84 784 93 HOH HOH . D 3 HOH A 85 785 52 HOH HOH . D 3 HOH A 86 786 80 HOH HOH . D 3 HOH A 87 787 92 HOH HOH . D 3 HOH A 88 788 85 HOH HOH . D 3 HOH A 89 789 87 HOH HOH . D 3 HOH A 90 790 86 HOH HOH . D 3 HOH A 91 791 84 HOH HOH . D 3 HOH A 92 792 72 HOH HOH . D 3 HOH A 93 793 67 HOH HOH . D 3 HOH A 94 794 27 HOH HOH . D 3 HOH A 95 795 98 HOH HOH . D 3 HOH A 96 796 45 HOH HOH . D 3 HOH A 97 797 36 HOH HOH . D 3 HOH A 98 798 15 HOH HOH . D 3 HOH A 99 799 94 HOH HOH . D 3 HOH A 100 800 75 HOH HOH . D 3 HOH A 101 801 103 HOH HOH . D 3 HOH A 102 802 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O27 XS4 . . . B 2 2.246 -21.928 -5.25 1 32.25 ? O27 XS4 601 A 1 HETATM 2 C C12 XS4 . . . B 2 1.826 -22.983 -5.896 1 30.88 ? C12 XS4 601 A 1 HETATM 3 N N20 XS4 . . . B 2 1.148 -23.911 -5.225 1 36.35 ? N20 XS4 601 A 1 HETATM 4 C C32 XS4 . . . B 2 0.695 -23.887 -3.839 1 40.09 ? C32 XS4 601 A 1 HETATM 5 C C41 XS4 . . . B 2 1.879 -24.27 -2.953 1 43.75 ? C41 XS4 601 A 1 HETATM 6 C C40 XS4 . . . B 2 0.137 -22.53 -3.406 1 37.99 ? C40 XS4 601 A 1 HETATM 7 C C39 XS4 . . . B 2 -0.45 -24.906 -3.71 1 34.76 ? C39 XS4 601 A 1 HETATM 8 N N7 XS4 . . . B 2 2.235 -23.144 -7.167 1 35.81 ? N7 XS4 601 A 1 HETATM 9 C C1 XS4 . . . B 2 1.998 -24.24 -7.927 1 36.92 ? C1 XS4 601 A 1 HETATM 10 C C9 XS4 . . . B 2 2.53 -24.274 -9.223 1 37.66 ? C9 XS4 601 A 1 HETATM 11 C C15 XS4 . . . B 2 3.035 -23.029 -9.857 1 35.72 ? C15 XS4 601 A 1 HETATM 12 C C23 XS4 . . . B 2 2.128 -21.966 -9.862 1 38.52 ? C23 XS4 601 A 1 HETATM 13 C C29 XS4 . . . B 2 2.396 -20.782 -10.522 1 39.09 ? C29 XS4 601 A 1 HETATM 14 O O37 XS4 . . . B 2 1.465 -19.765 -10.442 1 39.58 ? O37 XS4 601 A 1 HETATM 15 C C44 XS4 . . . B 2 1.689 -18.599 -11.136 1 35.06 ? C44 XS4 601 A 1 HETATM 16 C C28 XS4 . . . B 2 3.544 -20.672 -11.281 1 34.58 ? C28 XS4 601 A 1 HETATM 17 C C30 XS4 . . . B 2 4.432 -21.748 -11.33 1 38.27 ? C30 XS4 601 A 1 HETATM 18 O O38 XS4 . . . B 2 5.599 -21.693 -12.038 1 38.62 ? O38 XS4 601 A 1 HETATM 19 C C45 XS4 . . . B 2 6.011 -20.559 -12.761 1 37.66 ? C45 XS4 601 A 1 HETATM 20 C C22 XS4 . . . B 2 4.143 -22.946 -10.686 1 37.75 ? C22 XS4 601 A 1 HETATM 21 C C16 XS4 . . . B 2 2.311 -25.394 -10.04 1 36.95 ? C16 XS4 601 A 1 HETATM 22 C C13 XS4 . . . B 2 1.705 -26.512 -9.462 1 45.03 ? C13 XS4 601 A 1 HETATM 23 C C6 XS4 . . . B 2 1.275 -26.457 -8.134 1 39.59 ? C6 XS4 601 A 1 HETATM 24 N N3 XS4 . . . B 2 1.429 -25.34 -7.407 1 36.33 ? N3 XS4 601 A 1 HETATM 25 C C21 XS4 . . . B 2 1.495 -27.685 -10.196 1 44.11 ? C21 XS4 601 A 1 HETATM 26 N N17 XS4 . . . B 2 0.837 -28.723 -9.644 1 36.79 ? N17 XS4 601 A 1 HETATM 27 C C14 XS4 . . . B 2 0.41 -28.648 -8.353 1 46.05 ? C14 XS4 601 A 1 HETATM 28 N N4 XS4 . . . B 2 0.674 -27.548 -7.593 1 41.56 ? N4 XS4 601 A 1 HETATM 29 N N24 XS4 . . . B 2 -0.19 -29.719 -7.753 1 47.14 ? N24 XS4 601 A 1 HETATM 30 C C31 XS4 . . . B 2 -0.735 -30.909 -8.401 1 54.06 ? C31 XS4 601 A 1 HETATM 31 C C10 XS4 . . . B 2 -2.239 -30.658 -8.186 1 62.95 ? C10 XS4 601 A 1 HETATM 32 N N8 XS4 . . . B 2 -2.94 -29.673 -8.786 1 57.96 ? N8 XS4 601 A 1 HETATM 33 N N2 XS4 . . . B 2 -4.131 -29.545 -8.081 1 65.06 ? N2 XS4 601 A 1 HETATM 34 C C11 XS4 . . . B 2 -3.072 -31.196 -7.176 1 70.48 ? C11 XS4 601 A 1 HETATM 35 N N5 XS4 . . . B 2 -4.285 -30.621 -7.23 1 66.09 ? N5 XS4 601 A 1 HETATM 36 C C19 XS4 . . . B 2 -5.534 -30.647 -6.398 1 93.1 ? C19 XS4 601 A 1 HETATM 37 C C26 XS4 . . . B 2 -6.752 -31.129 -7.199 1 99.5 ? C26 XS4 601 A 1 HETATM 38 C C33 XS4 . . . B 2 -7.893 -31.68 -6.346 1 99.25 ? C33 XS4 601 A 1 HETATM 39 N N18 XS4 . . . B 2 -7.362 -32.702 -5.423 1 121.35 ? N18 XS4 601 A 1 HETATM 40 C C34 XS4 . . . B 2 -6.564 -31.95 -4.441 1 106.45 ? C34 XS4 601 A 1 HETATM 41 C C25 XS4 . . . B 2 -5.288 -31.457 -5.118 1 85.8 ? C25 XS4 601 A 1 HETATM 42 C C35 XS4 . . . B 2 -8.426 -33.506 -4.76 1 138.44 ? C35 XS4 601 A 1 HETATM 43 C C36 XS4 . . . B 2 -7.984 -34.899 -4.293 1 138.61 ? C36 XS4 601 A 1 HETATM 44 C C43 XS4 . . . B 2 -8.562 -35.473 -3.15 1 107.26 ? C43 XS4 601 A 1 HETATM 45 C C46 XS4 . . . B 2 -8.19 -36.751 -2.721 1 105.15 ? C46 XS4 601 A 1 HETATM 46 C C48 XS4 . . . B 2 -7.239 -37.477 -3.439 1 111.34 ? C48 XS4 601 A 1 HETATM 47 C C47 XS4 . . . B 2 -6.666 -36.922 -4.586 1 92.29 ? C47 XS4 601 A 1 HETATM 48 C C42 XS4 . . . B 2 -7.04 -35.647 -5.01 1 123.14 ? C42 XS4 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 48 #