data_6Q90 # _model_server_result.job_id F_c6A0qVyYTvrNRjs4Cpsg _model_server_result.datetime_utc '2024-11-16 13:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 6Q90 # _exptl.entry_id 6Q90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.261 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(4-methoxyphenyl)-N'-pyridin-4-ylurea" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.33 _cell.angle_gamma 90 _cell.entry_id 6Q90 _cell.length_a 73.55 _cell.length_b 114.51 _cell.length_c 120.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,K,O 3 1 D,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 391 A CYS 391 1_555 D SG CYS 391 D CYS 391 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? disulf ? disulf2 B SG CYS 391 B CYS 391 1_555 C SG CYS 391 C CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'C13 H13 N3 O2' _chem_comp.formula_weight 243.261 _chem_comp.id JHJ _chem_comp.mon_nstd_flag . _chem_comp.name "N-(4-methoxyphenyl)-N'-pyridin-4-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 JHJ doub 249 n y C18 C13 JHJ sing 250 n y C17 N16 JHJ sing 251 n y N16 C15 JHJ doub 252 n y N12 C13 JHJ sing 253 n n N12 C10 JHJ sing 254 n n C13 C14 JHJ doub 255 n y N09 C10 JHJ sing 256 n n N09 C06 JHJ sing 257 n n C05 C06 JHJ doub 258 n y C05 C04 JHJ sing 259 n y C10 O11 JHJ doub 260 n n C15 C14 JHJ sing 261 n y C06 C07 JHJ sing 262 n y C04 C03 JHJ doub 263 n y C07 C08 JHJ doub 264 n y C03 C08 JHJ sing 265 n y C03 O02 JHJ sing 266 n n C01 O02 JHJ sing 267 n n N12 H121 JHJ sing 268 n n C15 H151 JHJ sing 269 n n C17 H171 JHJ sing 270 n n C01 H013 JHJ sing 271 n n C01 H012 JHJ sing 272 n n C01 H011 JHJ sing 273 n n C04 H041 JHJ sing 274 n n C05 H051 JHJ sing 275 n n C07 H071 JHJ sing 276 n n C08 H081 JHJ sing 277 n n C14 H141 JHJ sing 278 n n C18 H181 JHJ sing 279 n n N09 H091 JHJ sing 280 n n # _atom_sites.entry_id 6Q90 _atom_sites.fract_transf_matrix[1][1] 0.013596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GAL A 1 401 393 GAL GAL . F 3 HFK A 1 402 1 HFK Cpd . G 2 GAL B 1 401 393 GAL GAL . H 3 HFK B 1 402 2 HFK Cpd . I 2 GAL C 1 401 393 GAL GAL . J 3 HFK C 1 402 3 HFK Cpd . K 4 JHJ C 1 403 2 JHJ LIG . L 4 JHJ D 1 401 1 JHJ LIG . M 5 HOH A 1 501 242 HOH HOH . M 5 HOH A 2 502 156 HOH HOH . M 5 HOH A 3 503 146 HOH HOH . M 5 HOH A 4 504 336 HOH HOH . M 5 HOH A 5 505 136 HOH HOH . M 5 HOH A 6 506 5 HOH HOH . M 5 HOH A 7 507 1 HOH HOH . M 5 HOH A 8 508 122 HOH HOH . M 5 HOH A 9 509 12 HOH HOH . M 5 HOH A 10 510 34 HOH HOH . M 5 HOH A 11 511 103 HOH HOH . M 5 HOH A 12 512 35 HOH HOH . M 5 HOH A 13 513 171 HOH HOH . M 5 HOH A 14 514 102 HOH HOH . M 5 HOH A 15 515 17 HOH HOH . M 5 HOH A 16 516 188 HOH HOH . M 5 HOH A 17 517 78 HOH HOH . M 5 HOH A 18 518 345 HOH HOH . M 5 HOH A 19 519 197 HOH HOH . M 5 HOH A 20 520 7 HOH HOH . M 5 HOH A 21 521 150 HOH HOH . M 5 HOH A 22 522 179 HOH HOH . M 5 HOH A 23 523 328 HOH HOH . M 5 HOH A 24 524 135 HOH HOH . M 5 HOH A 25 525 65 HOH HOH . M 5 HOH A 26 526 80 HOH HOH . M 5 HOH A 27 527 57 HOH HOH . M 5 HOH A 28 528 86 HOH HOH . M 5 HOH A 29 529 9 HOH HOH . M 5 HOH A 30 530 19 HOH HOH . M 5 HOH A 31 531 155 HOH HOH . M 5 HOH A 32 532 70 HOH HOH . M 5 HOH A 33 533 94 HOH HOH . M 5 HOH A 34 534 120 HOH HOH . M 5 HOH A 35 535 161 HOH HOH . M 5 HOH A 36 536 101 HOH HOH . M 5 HOH A 37 537 126 HOH HOH . M 5 HOH A 38 538 113 HOH HOH . M 5 HOH A 39 539 201 HOH HOH . M 5 HOH A 40 540 18 HOH HOH . M 5 HOH A 41 541 237 HOH HOH . M 5 HOH A 42 542 263 HOH HOH . M 5 HOH A 43 543 147 HOH HOH . M 5 HOH A 44 544 173 HOH HOH . M 5 HOH A 45 545 97 HOH HOH . M 5 HOH A 46 546 108 HOH HOH . M 5 HOH A 47 547 152 HOH HOH . M 5 HOH A 48 548 166 HOH HOH . M 5 HOH A 49 549 184 HOH HOH . M 5 HOH A 50 550 298 HOH HOH . M 5 HOH A 51 551 151 HOH HOH . M 5 HOH A 52 552 53 HOH HOH . M 5 HOH A 53 553 116 HOH HOH . M 5 HOH A 54 554 322 HOH HOH . M 5 HOH A 55 555 195 HOH HOH . M 5 HOH A 56 556 383 HOH HOH . M 5 HOH A 57 557 49 HOH HOH . M 5 HOH A 58 558 75 HOH HOH . M 5 HOH A 59 559 106 HOH HOH . M 5 HOH A 60 560 221 HOH HOH . M 5 HOH A 61 561 229 HOH HOH . M 5 HOH A 62 562 23 HOH HOH . M 5 HOH A 63 563 13 HOH HOH . M 5 HOH A 64 564 54 HOH HOH . M 5 HOH A 65 565 231 HOH HOH . M 5 HOH A 66 566 56 HOH HOH . M 5 HOH A 67 567 14 HOH HOH . M 5 HOH A 68 568 50 HOH HOH . M 5 HOH A 69 569 324 HOH HOH . M 5 HOH A 70 570 359 HOH HOH . M 5 HOH A 71 571 235 HOH HOH . M 5 HOH A 72 572 73 HOH HOH . M 5 HOH A 73 573 262 HOH HOH . M 5 HOH A 74 574 20 HOH HOH . M 5 HOH A 75 575 66 HOH HOH . M 5 HOH A 76 576 24 HOH HOH . M 5 HOH A 77 577 58 HOH HOH . M 5 HOH A 78 578 279 HOH HOH . M 5 HOH A 79 579 259 HOH HOH . M 5 HOH A 80 580 331 HOH HOH . M 5 HOH A 81 581 202 HOH HOH . M 5 HOH A 82 582 343 HOH HOH . M 5 HOH A 83 583 232 HOH HOH . M 5 HOH A 84 584 180 HOH HOH . M 5 HOH A 85 585 293 HOH HOH . M 5 HOH A 86 586 364 HOH HOH . M 5 HOH A 87 587 92 HOH HOH . M 5 HOH A 88 588 292 HOH HOH . M 5 HOH A 89 589 64 HOH HOH . N 5 HOH B 1 501 314 HOH HOH . N 5 HOH B 2 502 112 HOH HOH . N 5 HOH B 3 503 168 HOH HOH . N 5 HOH B 4 504 125 HOH HOH . N 5 HOH B 5 505 177 HOH HOH . N 5 HOH B 6 506 149 HOH HOH . N 5 HOH B 7 507 206 HOH HOH . N 5 HOH B 8 508 350 HOH HOH . N 5 HOH B 9 509 46 HOH HOH . N 5 HOH B 10 510 95 HOH HOH . N 5 HOH B 11 511 37 HOH HOH . N 5 HOH B 12 512 40 HOH HOH . N 5 HOH B 13 513 16 HOH HOH . N 5 HOH B 14 514 30 HOH HOH . N 5 HOH B 15 515 174 HOH HOH . N 5 HOH B 16 516 32 HOH HOH . N 5 HOH B 17 517 6 HOH HOH . N 5 HOH B 18 518 42 HOH HOH . N 5 HOH B 19 519 77 HOH HOH . N 5 HOH B 20 520 226 HOH HOH . N 5 HOH B 21 521 109 HOH HOH . N 5 HOH B 22 522 2 HOH HOH . N 5 HOH B 23 523 132 HOH HOH . N 5 HOH B 24 524 170 HOH HOH . N 5 HOH B 25 525 22 HOH HOH . N 5 HOH B 26 526 128 HOH HOH . N 5 HOH B 27 527 13 HOH HOH . N 5 HOH B 28 528 41 HOH HOH . N 5 HOH B 29 529 178 HOH HOH . N 5 HOH B 30 530 7 HOH HOH . N 5 HOH B 31 531 305 HOH HOH . N 5 HOH B 32 532 181 HOH HOH . N 5 HOH B 33 533 219 HOH HOH . N 5 HOH B 34 534 165 HOH HOH . N 5 HOH B 35 535 47 HOH HOH . N 5 HOH B 36 536 361 HOH HOH . N 5 HOH B 37 537 84 HOH HOH . N 5 HOH B 38 538 220 HOH HOH . N 5 HOH B 39 539 52 HOH HOH . N 5 HOH B 40 540 320 HOH HOH . N 5 HOH B 41 541 339 HOH HOH . N 5 HOH B 42 542 124 HOH HOH . N 5 HOH B 43 543 114 HOH HOH . N 5 HOH B 44 544 253 HOH HOH . N 5 HOH B 45 545 183 HOH HOH . N 5 HOH B 46 546 72 HOH HOH . N 5 HOH B 47 547 384 HOH HOH . N 5 HOH B 48 548 85 HOH HOH . N 5 HOH B 49 549 243 HOH HOH . N 5 HOH B 50 550 207 HOH HOH . O 5 HOH C 1 501 354 HOH HOH . O 5 HOH C 2 502 49 HOH HOH . O 5 HOH C 3 503 38 HOH HOH . O 5 HOH C 4 504 140 HOH HOH . O 5 HOH C 5 505 163 HOH HOH . O 5 HOH C 6 506 36 HOH HOH . O 5 HOH C 7 507 25 HOH HOH . O 5 HOH C 8 508 83 HOH HOH . O 5 HOH C 9 509 236 HOH HOH . O 5 HOH C 10 510 194 HOH HOH . O 5 HOH C 11 511 204 HOH HOH . O 5 HOH C 12 512 3 HOH HOH . O 5 HOH C 13 513 11 HOH HOH . O 5 HOH C 14 514 71 HOH HOH . O 5 HOH C 15 515 134 HOH HOH . O 5 HOH C 16 516 252 HOH HOH . O 5 HOH C 17 517 41 HOH HOH . O 5 HOH C 18 518 325 HOH HOH . O 5 HOH C 19 519 62 HOH HOH . O 5 HOH C 20 520 81 HOH HOH . O 5 HOH C 21 521 10 HOH HOH . O 5 HOH C 22 522 193 HOH HOH . O 5 HOH C 23 523 271 HOH HOH . O 5 HOH C 24 524 29 HOH HOH . O 5 HOH C 25 525 105 HOH HOH . O 5 HOH C 26 526 75 HOH HOH . O 5 HOH C 27 527 8 HOH HOH . O 5 HOH C 28 528 250 HOH HOH . O 5 HOH C 29 529 130 HOH HOH . O 5 HOH C 30 530 33 HOH HOH . O 5 HOH C 31 531 44 HOH HOH . O 5 HOH C 32 532 144 HOH HOH . O 5 HOH C 33 533 353 HOH HOH . O 5 HOH C 34 534 209 HOH HOH . O 5 HOH C 35 535 12 HOH HOH . O 5 HOH C 36 536 121 HOH HOH . O 5 HOH C 37 537 296 HOH HOH . O 5 HOH C 38 538 315 HOH HOH . O 5 HOH C 39 539 218 HOH HOH . O 5 HOH C 40 540 304 HOH HOH . O 5 HOH C 41 541 257 HOH HOH . P 5 HOH D 1 501 74 HOH HOH . P 5 HOH D 2 502 366 HOH HOH . P 5 HOH D 3 503 276 HOH HOH . P 5 HOH D 4 504 164 HOH HOH . P 5 HOH D 5 505 131 HOH HOH . P 5 HOH D 6 506 51 HOH HOH . P 5 HOH D 7 507 138 HOH HOH . P 5 HOH D 8 508 4 HOH HOH . P 5 HOH D 9 509 60 HOH HOH . P 5 HOH D 10 510 281 HOH HOH . P 5 HOH D 11 511 278 HOH HOH . P 5 HOH D 12 512 15 HOH HOH . P 5 HOH D 13 513 85 HOH HOH . P 5 HOH D 14 514 214 HOH HOH . P 5 HOH D 15 515 142 HOH HOH . P 5 HOH D 16 516 88 HOH HOH . P 5 HOH D 17 517 287 HOH HOH . P 5 HOH D 18 518 167 HOH HOH . P 5 HOH D 19 519 63 HOH HOH . P 5 HOH D 20 520 154 HOH HOH . P 5 HOH D 21 521 334 HOH HOH . P 5 HOH D 22 522 182 HOH HOH . P 5 HOH D 23 523 190 HOH HOH . P 5 HOH D 24 524 256 HOH HOH . P 5 HOH D 25 525 344 HOH HOH . P 5 HOH D 26 526 104 HOH HOH . P 5 HOH D 27 527 22 HOH HOH . P 5 HOH D 28 528 117 HOH HOH . P 5 HOH D 29 529 67 HOH HOH . P 5 HOH D 30 530 379 HOH HOH . P 5 HOH D 31 531 321 HOH HOH . P 5 HOH D 32 532 282 HOH HOH . P 5 HOH D 33 533 380 HOH HOH . P 5 HOH D 34 534 123 HOH HOH . P 5 HOH D 35 535 160 HOH HOH . P 5 HOH D 36 536 241 HOH HOH . P 5 HOH D 37 537 291 HOH HOH . P 5 HOH D 38 538 290 HOH HOH . P 5 HOH D 39 539 319 HOH HOH . P 5 HOH D 40 540 357 HOH HOH . P 5 HOH D 41 541 5 HOH HOH . P 5 HOH D 42 542 338 HOH HOH . P 5 HOH D 43 543 360 HOH HOH . P 5 HOH D 44 544 79 HOH HOH . P 5 HOH D 45 545 228 HOH HOH . P 5 HOH D 46 546 205 HOH HOH . P 5 HOH D 47 547 27 HOH HOH . P 5 HOH D 48 548 203 HOH HOH . P 5 HOH D 49 549 371 HOH HOH . P 5 HOH D 50 550 247 HOH HOH . P 5 HOH D 51 551 378 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JHJ . . . L 4 30.453 6.269 -22.42 1 60.49 ? C10 JHJ 401 D 1 HETATM 2 N N12 JHJ . . . L 4 30.815 6.585 -21.069 1 64.46 ? N12 JHJ 401 D 1 HETATM 3 C C13 JHJ . . . L 4 32.086 6.915 -20.584 1 74.81 ? C13 JHJ 401 D 1 HETATM 4 C C15 JHJ . . . L 4 33.496 7.709 -18.786 1 79.12 ? C15 JHJ 401 D 1 HETATM 5 C C17 JHJ . . . L 4 34.509 6.97 -20.793 1 84.23 ? C17 JHJ 401 D 1 HETATM 6 C C01 JHJ . . . L 4 25.598 2.996 -27.039 1 44.89 ? C01 JHJ 401 D 1 HETATM 7 C C03 JHJ . . . L 4 27.165 4.492 -26.033 1 41.7 ? C03 JHJ 401 D 1 HETATM 8 C C04 JHJ . . . L 4 27.993 5.578 -26.166 1 41.38 ? C04 JHJ 401 D 1 HETATM 9 C C05 JHJ . . . L 4 28.63 6.091 -25.046 1 44.12 ? C05 JHJ 401 D 1 HETATM 10 C C06 JHJ . . . L 4 28.437 5.516 -23.807 1 42.73 ? C06 JHJ 401 D 1 HETATM 11 C C07 JHJ . . . L 4 27.603 4.466 -23.698 1 43.62 ? C07 JHJ 401 D 1 HETATM 12 C C08 JHJ . . . L 4 26.95 3.94 -24.794 1 43.32 ? C08 JHJ 401 D 1 HETATM 13 C C14 JHJ . . . L 4 32.207 7.448 -19.272 1 79.49 ? C14 JHJ 401 D 1 HETATM 14 C C18 JHJ . . . L 4 33.27 6.674 -21.371 1 81.58 ? C18 JHJ 401 D 1 HETATM 15 N N09 JHJ . . . L 4 29.07 5.896 -22.58 1 51.68 ? N09 JHJ 401 D 1 HETATM 16 N N16 JHJ . . . L 4 34.644 7.48 -19.518 1 90.99 ? N16 JHJ 401 D 1 HETATM 17 O O02 JHJ . . . L 4 26.645 3.947 -27.192 1 42.33 ? O02 JHJ 401 D 1 HETATM 18 O O11 JHJ . . . L 4 31.254 6.334 -23.356 1 53.99 ? O11 JHJ 401 D 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 18 #