data_6Q94
#
_model_server_result.job_id            jwnInUJR2YCAJUfr8r3OeA 
_model_server_result.datetime_utc      '2024-10-11 06:22:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q94 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":401}' 
#
_entry.id    6Q94 
#
_exptl.entry_id    6Q94 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q94 
_cell.length_a            101.62 
_cell.length_b            231.06 
_cell.length_c            383.89 
_cell.Z_PDB               64 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q94 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,CA 1 1,3 
C,D,E,F,M,N,O,P,Q,R,S,T,U,V,DA,EA 2 1 
G,H,W,X,Y,Z,AA,BA,FA 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 304.86 0 191.945 
3 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 462.12 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 S N N 
? 2 V N N 
? 2 W N N 
? 2 Z N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 313 n n 
PA O2A NAP sing 314 n n 
PA O5B NAP sing 315 n n 
PA O3 NAP sing 316 n n 
O2A HOA2 NAP sing 317 n n 
O5B C5B NAP sing 318 n n 
C5B C4B NAP sing 319 n n 
C5B H51A NAP sing 320 n n 
C5B H52A NAP sing 321 n n 
C4B O4B NAP sing 322 n n 
C4B C3B NAP sing 323 n n 
C4B H4B NAP sing 324 n n 
O4B C1B NAP sing 325 n n 
C3B O3B NAP sing 326 n n 
C3B C2B NAP sing 327 n n 
C3B H3B NAP sing 328 n n 
O3B HO3A NAP sing 329 n n 
C2B O2B NAP sing 330 n n 
C2B C1B NAP sing 331 n n 
C2B H2B NAP sing 332 n n 
O2B P2B NAP sing 333 n n 
C1B N9A NAP sing 334 n n 
C1B H1B NAP sing 335 n n 
N9A C8A NAP sing 336 n y 
N9A C4A NAP sing 337 n y 
C8A N7A NAP doub 338 n y 
C8A H8A NAP sing 339 n n 
N7A C5A NAP sing 340 n y 
C5A C6A NAP sing 341 n y 
C5A C4A NAP doub 342 n y 
C6A N6A NAP sing 343 n n 
C6A N1A NAP doub 344 n y 
N6A H61A NAP sing 345 n n 
N6A H62A NAP sing 346 n n 
N1A C2A NAP sing 347 n y 
C2A N3A NAP doub 348 n y 
C2A H2A NAP sing 349 n n 
N3A C4A NAP sing 350 n y 
O3 PN NAP sing 351 n n 
PN O1N NAP doub 352 n n 
PN O2N NAP sing 353 n n 
PN O5D NAP sing 354 n n 
O5D C5D NAP sing 355 n n 
C5D C4D NAP sing 356 n n 
C5D H51N NAP sing 357 n n 
C5D H52N NAP sing 358 n n 
C4D O4D NAP sing 359 n n 
C4D C3D NAP sing 360 n n 
C4D H4D NAP sing 361 n n 
O4D C1D NAP sing 362 n n 
C3D O3D NAP sing 363 n n 
C3D C2D NAP sing 364 n n 
C3D H3D NAP sing 365 n n 
O3D HO3N NAP sing 366 n n 
C2D O2D NAP sing 367 n n 
C2D C1D NAP sing 368 n n 
C2D H2D NAP sing 369 n n 
O2D HO2N NAP sing 370 n n 
C1D N1N NAP sing 371 n n 
C1D H1D NAP sing 372 n n 
N1N C2N NAP sing 373 n y 
N1N C6N NAP doub 374 n y 
C2N C3N NAP doub 375 n y 
C2N H2N NAP sing 376 n n 
C3N C7N NAP sing 377 n n 
C3N C4N NAP sing 378 n y 
C7N O7N NAP doub 379 n n 
C7N N7N NAP sing 380 n n 
N7N H71N NAP sing 381 n n 
N7N H72N NAP sing 382 n n 
C4N C5N NAP doub 383 n y 
C4N H4N NAP sing 384 n n 
C5N C6N NAP sing 385 n y 
C5N H5N NAP sing 386 n n 
C6N H6N NAP sing 387 n n 
P2B O1X NAP doub 388 n n 
P2B O2X NAP sing 389 n n 
P2B O3X NAP sing 390 n n 
O2X HOP2 NAP sing 391 n n 
O3X HOP3 NAP sing 392 n n 
#
_atom_sites.entry_id                     6Q94 
_atom_sites.fract_transf_matrix[1][1]    0.009841 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAP B 1 401 3 NAP NAP . 
J 3 GDD B 1 402 4 GDD GDD . 
K 2 NAP A 1 401 2 NAP NAP . 
L 3 GDD A 1 402 9 GDD GDD . 
M 2 NAP C 1 401 4 NAP NAP . 
N 3 GDD C 1 402 6 GDD GDD . 
O 2 NAP D 1 401 5 NAP NAP . 
P 3 GDD D 1 402 10 GDD GDD . 
Q 4 EDO D 1 403 1 EDO EDO . 
R 4 EDO D 1 404 3 EDO EDO . 
S 2 NAP E 1 401 6 NAP NAP . 
T 3 GDD E 1 402 7 GDD GDD . 
U 3 GDD F 1 401 5 GDD GDD . 
V 2 NAP F 1 402 7 NAP NAP . 
W 2 NAP G 1 401 8 NAP NAP . 
X 3 GDD G 1 402 11 GDD GDD . 
Y 4 EDO G 1 403 4 EDO EDO . 
Z 2 NAP H 1 401 9 NAP NAP . 
AA 3 GDD H 1 402 12 GDD GDD . 
BA 4 EDO H 1 403 2 EDO EDO . 
CA 5 HOH B 1 501 2 HOH HOH . 
DA 5 HOH C 1 501 4 HOH HOH . 
EA 5 HOH E 1 501 1 HOH HOH . 
FA 5 HOH G 1 501 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . Z 2 133.116 248.055 91.771 1 84.04 ? PA NAP 401 H 1 
HETATM 2 O O1A NAP . . . Z 2 131.663 248.176 91.559 1 85.99 ? O1A NAP 401 H 1 
HETATM 3 O O2A NAP . . . Z 2 134.012 248.182 90.502 1 84.39 ? O2A NAP 401 H 1 
HETATM 4 O O5B NAP . . . Z 2 133.481 249.221 92.798 1 79.97 ? O5B NAP 401 H 1 
HETATM 5 C C5B NAP . . . Z 2 134.793 249.557 93.272 1 78.84 ? C5B NAP 401 H 1 
HETATM 6 C C4B NAP . . . Z 2 134.531 250.538 94.392 1 79.27 ? C4B NAP 401 H 1 
HETATM 7 O O4B NAP . . . Z 2 135.782 251.055 94.902 1 79.34 ? O4B NAP 401 H 1 
HETATM 8 C C3B NAP . . . Z 2 133.673 251.756 94.026 1 80.45 ? C3B NAP 401 H 1 
HETATM 9 O O3B NAP . . . Z 2 132.816 252.151 95.09 1 82.14 ? O3B NAP 401 H 1 
HETATM 10 C C2B NAP . . . Z 2 134.742 252.812 93.788 1 77.98 ? C2B NAP 401 H 1 
HETATM 11 O O2B NAP . . . Z 2 134.227 254.149 93.918 1 76.98 ? O2B NAP 401 H 1 
HETATM 12 C C1B NAP . . . Z 2 135.695 252.465 94.914 1 78.37 ? C1B NAP 401 H 1 
HETATM 13 N N9A NAP . . . Z 2 137.024 253.012 94.733 1 78.35 ? N9A NAP 401 H 1 
HETATM 14 C C8A NAP . . . Z 2 137.85 252.892 93.647 1 76.85 ? C8A NAP 401 H 1 
HETATM 15 N N7A NAP . . . Z 2 138.978 253.549 93.761 1 74.97 ? N7A NAP 401 H 1 
HETATM 16 C C5A NAP . . . Z 2 138.889 254.138 95.014 1 79.29 ? C5A NAP 401 H 1 
HETATM 17 C C6A NAP . . . Z 2 139.762 254.972 95.734 1 86.35 ? C6A NAP 401 H 1 
HETATM 18 N N6A NAP . . . Z 2 140.932 255.398 95.268 1 91.94 ? N6A NAP 401 H 1 
HETATM 19 N N1A NAP . . . Z 2 139.381 255.367 96.969 1 84.8 ? N1A NAP 401 H 1 
HETATM 20 C C2A NAP . . . Z 2 138.205 254.953 97.439 1 82.35 ? C2A NAP 401 H 1 
HETATM 21 N N3A NAP . . . Z 2 137.296 254.177 96.848 1 81.27 ? N3A NAP 401 H 1 
HETATM 22 C C4A NAP . . . Z 2 137.697 253.805 95.627 1 80 ? C4A NAP 401 H 1 
HETATM 23 O O3 NAP . . . Z 2 133.449 246.671 92.494 1 89.74 ? O3 NAP 401 H 1 
HETATM 24 P PN NAP . . . Z 2 132.388 245.622 93.078 1 96.46 ? PN NAP 401 H 1 
HETATM 25 O O1N NAP . . . Z 2 131.278 245.504 92.111 1 100.96 ? O1N NAP 401 H 1 
HETATM 26 O O2N NAP . . . Z 2 132.126 245.969 94.496 1 96.91 ? O2N NAP 401 H 1 
HETATM 27 O O5D NAP . . . Z 2 133.18 244.242 93.084 1 98.68 ? O5D NAP 401 H 1 
HETATM 28 C C5D NAP . . . Z 2 134.605 244.314 92.931 1 100.05 ? C5D NAP 401 H 1 
HETATM 29 C C4D NAP . . . Z 2 135.367 244.244 94.23 1 97.93 ? C4D NAP 401 H 1 
HETATM 30 O O4D NAP . . . Z 2 135.455 242.906 94.753 1 96.87 ? O4D NAP 401 H 1 
HETATM 31 C C3D NAP . . . Z 2 136.797 244.709 94.062 1 98.1 ? C3D NAP 401 H 1 
HETATM 32 O O3D NAP . . . Z 2 137.195 245.249 95.32 1 94.57 ? O3D NAP 401 H 1 
HETATM 33 C C2D NAP . . . Z 2 137.541 243.416 93.717 1 101.28 ? C2D NAP 401 H 1 
HETATM 34 O O2D NAP . . . Z 2 138.903 243.466 94.121 1 107.64 ? O2D NAP 401 H 1 
HETATM 35 C C1D NAP . . . Z 2 136.668 242.32 94.356 1 99.39 ? C1D NAP 401 H 1 
HETATM 36 N N1N NAP . . . Z 2 136.333 241.197 93.327 1 100.04 ? N1N NAP 401 H 1 
HETATM 37 P P2B NAP . . . Z 2 133.585 254.899 92.642 1 74.84 ? P2B NAP 401 H 1 
HETATM 38 O O1X NAP . . . Z 2 132.1 254.852 92.755 1 73.61 ? O1X NAP 401 H 1 
HETATM 39 O O2X NAP . . . Z 2 134.106 256.339 92.659 1 77.24 ? O2X NAP 401 H 1 
HETATM 40 O O3X NAP . . . Z 2 134.186 254.216 91.395 1 71.21 ? O3X NAP 401 H 1 
HETATM 41 H H51A NAP . . . Z 2 135.383 249.972 92.456 1 94.61 ? H51A NAP 401 H 1 
HETATM 42 H H52A NAP . . . Z 2 135.31 248.654 93.594 1 94.61 ? H52A NAP 401 H 1 
HETATM 43 H H4B NAP . . . Z 2 134.123 250.008 95.252 1 95.12 ? H4B NAP 401 H 1 
HETATM 44 H H3B NAP . . . Z 2 133.083 251.568 93.131 1 96.54 ? H3B NAP 401 H 1 
HETATM 45 H HO3A NAP . . . Z 2 132.087 251.477 95.119 1 98.57 ? HO3A NAP 401 H 1 
HETATM 46 H H2B NAP . . . Z 2 135.176 252.739 92.791 1 93.57 ? H2B NAP 401 H 1 
HETATM 47 H H1B NAP . . . Z 2 135.32 252.809 95.877 1 94.04 ? H1B NAP 401 H 1 
HETATM 48 H H8A NAP . . . Z 2 137.594 252.305 92.767 1 92.22 ? H8A NAP 401 H 1 
HETATM 49 H H61A NAP . . . Z 2 141.238 255.119 94.341 1 110.33 ? H61A NAP 401 H 1 
HETATM 50 H H62A NAP . . . Z 2 141.514 256 95.841 1 110.33 ? H62A NAP 401 H 1 
HETATM 51 H H2A NAP . . . Z 2 137.978 255.309 98.443 1 98.82 ? H2A NAP 401 H 1 
HETATM 52 H H51N NAP . . . Z 2 134.859 245.249 92.432 1 120.07 ? H51N NAP 401 H 1 
HETATM 53 H H52N NAP . . . Z 2 134.933 243.493 92.294 1 120.07 ? H52N NAP 401 H 1 
HETATM 54 H H4D NAP . . . Z 2 134.8 244.71 95.034 1 117.51 ? H4D NAP 401 H 1 
HETATM 55 H H3D NAP . . . Z 2 136.947 245.426 93.257 1 117.71 ? H3D NAP 401 H 1 
HETATM 56 H HO3N NAP . . . Z 2 137.197 246.235 95.204 1 113.49 ? HO3N NAP 401 H 1 
HETATM 57 H H2D NAP . . . Z 2 137.684 243.236 92.653 1 121.54 ? H2D NAP 401 H 1 
HETATM 58 H HO2N NAP . . . Z 2 139.47 243.784 93.371 1 129.16 ? HO2N NAP 401 H 1 
HETATM 59 H H1D NAP . . . Z 2 137.127 241.849 95.225 1 119.27 ? H1D NAP 401 H 1 
#
_model_server_stats.io_time_ms              242 
_model_server_stats.parse_time_ms           133 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           59 
#