data_6Q94
#
_model_server_result.job_id            aYB8Ef3HKIWaG_5nATEbtQ 
_model_server_result.datetime_utc      '2025-02-17 09:00:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q94 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":402}' 
#
_entry.id    6Q94 
#
_exptl.entry_id    6Q94 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q94 
_cell.length_a            101.62 
_cell.length_b            231.06 
_cell.length_c            383.89 
_cell.Z_PDB               64 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q94 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,CA 1 1,3 
C,D,E,F,M,N,O,P,Q,R,S,T,U,V,DA,EA 2 1 
G,H,W,X,Y,Z,AA,BA,FA 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 304.86 0 191.945 
3 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 462.12 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 S N N 
? 2 V N N 
? 2 W N N 
? 2 Z N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 313 n n 
PA O2A NAP sing 314 n n 
PA O5B NAP sing 315 n n 
PA O3 NAP sing 316 n n 
O2A HOA2 NAP sing 317 n n 
O5B C5B NAP sing 318 n n 
C5B C4B NAP sing 319 n n 
C5B H51A NAP sing 320 n n 
C5B H52A NAP sing 321 n n 
C4B O4B NAP sing 322 n n 
C4B C3B NAP sing 323 n n 
C4B H4B NAP sing 324 n n 
O4B C1B NAP sing 325 n n 
C3B O3B NAP sing 326 n n 
C3B C2B NAP sing 327 n n 
C3B H3B NAP sing 328 n n 
O3B HO3A NAP sing 329 n n 
C2B O2B NAP sing 330 n n 
C2B C1B NAP sing 331 n n 
C2B H2B NAP sing 332 n n 
O2B P2B NAP sing 333 n n 
C1B N9A NAP sing 334 n n 
C1B H1B NAP sing 335 n n 
N9A C8A NAP sing 336 n y 
N9A C4A NAP sing 337 n y 
C8A N7A NAP doub 338 n y 
C8A H8A NAP sing 339 n n 
N7A C5A NAP sing 340 n y 
C5A C6A NAP sing 341 n y 
C5A C4A NAP doub 342 n y 
C6A N6A NAP sing 343 n n 
C6A N1A NAP doub 344 n y 
N6A H61A NAP sing 345 n n 
N6A H62A NAP sing 346 n n 
N1A C2A NAP sing 347 n y 
C2A N3A NAP doub 348 n y 
C2A H2A NAP sing 349 n n 
N3A C4A NAP sing 350 n y 
O3 PN NAP sing 351 n n 
PN O1N NAP doub 352 n n 
PN O2N NAP sing 353 n n 
PN O5D NAP sing 354 n n 
O5D C5D NAP sing 355 n n 
C5D C4D NAP sing 356 n n 
C5D H51N NAP sing 357 n n 
C5D H52N NAP sing 358 n n 
C4D O4D NAP sing 359 n n 
C4D C3D NAP sing 360 n n 
C4D H4D NAP sing 361 n n 
O4D C1D NAP sing 362 n n 
C3D O3D NAP sing 363 n n 
C3D C2D NAP sing 364 n n 
C3D H3D NAP sing 365 n n 
O3D HO3N NAP sing 366 n n 
C2D O2D NAP sing 367 n n 
C2D C1D NAP sing 368 n n 
C2D H2D NAP sing 369 n n 
O2D HO2N NAP sing 370 n n 
C1D N1N NAP sing 371 n n 
C1D H1D NAP sing 372 n n 
N1N C2N NAP sing 373 n y 
N1N C6N NAP doub 374 n y 
C2N C3N NAP doub 375 n y 
C2N H2N NAP sing 376 n n 
C3N C7N NAP sing 377 n n 
C3N C4N NAP sing 378 n y 
C7N O7N NAP doub 379 n n 
C7N N7N NAP sing 380 n n 
N7N H71N NAP sing 381 n n 
N7N H72N NAP sing 382 n n 
C4N C5N NAP doub 383 n y 
C4N H4N NAP sing 384 n n 
C5N C6N NAP sing 385 n y 
C5N H5N NAP sing 386 n n 
C6N H6N NAP sing 387 n n 
P2B O1X NAP doub 388 n n 
P2B O2X NAP sing 389 n n 
P2B O3X NAP sing 390 n n 
O2X HOP2 NAP sing 391 n n 
O3X HOP3 NAP sing 392 n n 
#
_atom_sites.entry_id                     6Q94 
_atom_sites.fract_transf_matrix[1][1]    0.009841 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAP B 1 401 3 NAP NAP . 
J 3 GDD B 1 402 4 GDD GDD . 
K 2 NAP A 1 401 2 NAP NAP . 
L 3 GDD A 1 402 9 GDD GDD . 
M 2 NAP C 1 401 4 NAP NAP . 
N 3 GDD C 1 402 6 GDD GDD . 
O 2 NAP D 1 401 5 NAP NAP . 
P 3 GDD D 1 402 10 GDD GDD . 
Q 4 EDO D 1 403 1 EDO EDO . 
R 4 EDO D 1 404 3 EDO EDO . 
S 2 NAP E 1 401 6 NAP NAP . 
T 3 GDD E 1 402 7 GDD GDD . 
U 3 GDD F 1 401 5 GDD GDD . 
V 2 NAP F 1 402 7 NAP NAP . 
W 2 NAP G 1 401 8 NAP NAP . 
X 3 GDD G 1 402 11 GDD GDD . 
Y 4 EDO G 1 403 4 EDO EDO . 
Z 2 NAP H 1 401 9 NAP NAP . 
AA 3 GDD H 1 402 12 GDD GDD . 
BA 4 EDO H 1 403 2 EDO EDO . 
CA 5 HOH B 1 501 2 HOH HOH . 
DA 5 HOH C 1 501 4 HOH HOH . 
EA 5 HOH E 1 501 1 HOH HOH . 
FA 5 HOH G 1 501 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . V 2 124.872 297.828 40.253 1 59.81 ? PA NAP 402 F 1 
HETATM 2 O O1A NAP . . . V 2 125.712 298.951 39.802 1 60.34 ? O1A NAP 402 F 1 
HETATM 3 O O2A NAP . . . V 2 124.311 297.965 41.67 1 63.11 ? O2A NAP 402 F 1 
HETATM 4 O O5B NAP . . . V 2 123.625 297.526 39.264 1 61.39 ? O5B NAP 402 F 1 
HETATM 5 C C5B NAP . . . V 2 122.287 297.533 39.801 1 62.01 ? C5B NAP 402 F 1 
HETATM 6 C C4B NAP . . . V 2 121.264 297.86 38.736 1 62.55 ? C4B NAP 402 F 1 
HETATM 7 O O4B NAP . . . V 2 119.982 297.281 39.087 1 65.41 ? O4B NAP 402 F 1 
HETATM 8 C C3B NAP . . . V 2 120.995 299.35 38.528 1 60.41 ? C3B NAP 402 F 1 
HETATM 9 O O3B NAP . . . V 2 120.7 299.596 37.155 1 55.9 ? O3B NAP 402 F 1 
HETATM 10 C C2B NAP . . . V 2 119.755 299.574 39.389 1 63.16 ? C2B NAP 402 F 1 
HETATM 11 O O2B NAP . . . V 2 119.091 300.799 39.028 1 66.16 ? O2B NAP 402 F 1 
HETATM 12 C C1B NAP . . . V 2 118.995 298.298 39.068 1 64.61 ? C1B NAP 402 F 1 
HETATM 13 N N9A NAP . . . V 2 117.937 297.983 40.022 1 65.86 ? N9A NAP 402 F 1 
HETATM 14 C C8A NAP . . . V 2 118.007 297.935 41.391 1 62.89 ? C8A NAP 402 F 1 
HETATM 15 N N7A NAP . . . V 2 116.849 297.762 41.98 1 61.25 ? N7A NAP 402 F 1 
HETATM 16 C C5A NAP . . . V 2 115.95 297.685 40.922 1 63.26 ? C5A NAP 402 F 1 
HETATM 17 C C6A NAP . . . V 2 114.55 297.555 40.874 1 63.03 ? C6A NAP 402 F 1 
HETATM 18 N N6A NAP . . . V 2 113.776 297.415 41.948 1 63.02 ? N6A NAP 402 F 1 
HETATM 19 N N1A NAP . . . V 2 113.959 297.545 39.657 1 62.15 ? N1A NAP 402 F 1 
HETATM 20 C C2A NAP . . . V 2 114.729 297.624 38.573 1 58.79 ? C2A NAP 402 F 1 
HETATM 21 N N3A NAP . . . V 2 116.057 297.74 38.499 1 60.36 ? N3A NAP 402 F 1 
HETATM 22 C C4A NAP . . . V 2 116.613 297.791 39.714 1 64.4 ? C4A NAP 402 F 1 
HETATM 23 O O3 NAP . . . V 2 125.641 296.437 40.177 1 60.31 ? O3 NAP 402 F 1 
HETATM 24 P PN NAP . . . V 2 126.408 295.667 39.003 1 67.4 ? PN NAP 402 F 1 
HETATM 25 O O1N NAP . . . V 2 126.365 296.496 37.779 1 70.55 ? O1N NAP 402 F 1 
HETATM 26 O O2N NAP . . . V 2 127.716 295.173 39.495 1 68.42 ? O2N NAP 402 F 1 
HETATM 27 O O5D NAP . . . V 2 125.433 294.43 38.757 1 70.11 ? O5D NAP 402 F 1 
HETATM 28 C C5D NAP . . . V 2 125.914 293.072 38.849 1 71.06 ? C5D NAP 402 F 1 
HETATM 29 C C4D NAP . . . V 2 124.723 292.158 38.901 1 69.93 ? C4D NAP 402 F 1 
HETATM 30 O O4D NAP . . . V 2 125.179 290.794 38.997 1 70.28 ? O4D NAP 402 F 1 
HETATM 31 C C3D NAP . . . V 2 123.861 292.319 40.133 1 73.66 ? C3D NAP 402 F 1 
HETATM 32 O O3D NAP . . . V 2 122.602 291.719 39.845 1 75.79 ? O3D NAP 402 F 1 
HETATM 33 C C2D NAP . . . V 2 124.695 291.579 41.188 1 72.5 ? C2D NAP 402 F 1 
HETATM 34 O O2D NAP . . . V 2 123.872 291.134 42.262 1 73.35 ? O2D NAP 402 F 1 
HETATM 35 C C1D NAP . . . V 2 125.315 290.441 40.355 1 67.42 ? C1D NAP 402 F 1 
HETATM 36 N N1N NAP . . . V 2 126.837 290.223 40.648 1 60.04 ? N1N NAP 402 F 1 
HETATM 37 P P2B NAP . . . V 2 119.518 302.159 39.729 1 67.46 ? P2B NAP 402 F 1 
HETATM 38 O O1X NAP . . . V 2 118.434 303.197 39.67 1 67.34 ? O1X NAP 402 F 1 
HETATM 39 O O2X NAP . . . V 2 120.768 302.527 38.941 1 74.01 ? O2X NAP 402 F 1 
HETATM 40 O O3X NAP . . . V 2 119.961 301.834 41.158 1 69.28 ? O3X NAP 402 F 1 
HETATM 41 H H51A NAP . . . V 2 122.113 296.556 40.25 1 74.41 ? H51A NAP 402 F 1 
HETATM 42 H H52A NAP . . . V 2 122.27 298.252 40.619 1 74.41 ? H52A NAP 402 F 1 
HETATM 43 H H4B NAP . . . V 2 121.526 297.353 37.809 1 75.06 ? H4B NAP 402 F 1 
HETATM 44 H H3B NAP . . . V 2 121.815 299.976 38.875 1 72.49 ? H3B NAP 402 F 1 
HETATM 45 H HO3A NAP . . . V 2 119.925 299.017 36.934 1 67.08 ? HO3A NAP 402 F 1 
HETATM 46 H H2B NAP . . . V 2 119.958 299.666 40.455 1 75.79 ? H2B NAP 402 F 1 
HETATM 47 H H1B NAP . . . V 2 118.526 298.336 38.085 1 77.53 ? H1B NAP 402 F 1 
HETATM 48 H H8A NAP . . . V 2 118.941 298.032 41.943 1 75.46 ? H8A NAP 402 F 1 
HETATM 49 H H61A NAP . . . V 2 114.194 297.397 42.872 1 75.62 ? H61A NAP 402 F 1 
HETATM 50 H H62A NAP . . . V 2 112.771 297.327 41.837 1 75.62 ? H62A NAP 402 F 1 
HETATM 51 H H2A NAP . . . V 2 114.179 297.586 37.633 1 70.54 ? H2A NAP 402 F 1 
HETATM 52 H H51N NAP . . . V 2 126.522 292.945 39.743 1 85.27 ? H51N NAP 402 F 1 
HETATM 53 H H52N NAP . . . V 2 126.533 292.83 37.985 1 85.27 ? H52N NAP 402 F 1 
HETATM 54 H H4D NAP . . . V 2 124.173 292.21 37.962 1 83.91 ? H4D NAP 402 F 1 
HETATM 55 H H3D NAP . . . V 2 123.704 293.342 40.47 1 88.4 ? H3D NAP 402 F 1 
HETATM 56 H HO3N NAP . . . V 2 122.756 290.739 39.865 1 90.94 ? HO3N NAP 402 F 1 
HETATM 57 H H2D NAP . . . V 2 125.433 292.183 41.714 1 87 ? H2D NAP 402 F 1 
HETATM 58 H HO2N NAP . . . V 2 123.9 291.789 43.008 1 88.02 ? HO2N NAP 402 F 1 
HETATM 59 H H1D NAP . . . V 2 124.839 289.477 40.528 1 80.91 ? H1D NAP 402 F 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           59 
#