data_6Q94 # _model_server_result.job_id mFS158zIRkRqNPQ5xdX9jA _model_server_result.datetime_utc '2024-11-27 05:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":403}' # _entry.id 6Q94 # _exptl.entry_id 6Q94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q94 _cell.length_a 101.62 _cell.length_b 231.06 _cell.length_c 383.89 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,CA 1 1,3 C,D,E,F,M,N,O,P,Q,R,S,T,U,V,DA,EA 2 1 G,H,W,X,Y,Z,AA,BA,FA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 304.86 0 191.945 3 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 462.12 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 R N N ? 4 Y N N ? 4 BA N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6Q94 _atom_sites.fract_transf_matrix[1][1] 0.009841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAP B 1 401 3 NAP NAP . J 3 GDD B 1 402 4 GDD GDD . K 2 NAP A 1 401 2 NAP NAP . L 3 GDD A 1 402 9 GDD GDD . M 2 NAP C 1 401 4 NAP NAP . N 3 GDD C 1 402 6 GDD GDD . O 2 NAP D 1 401 5 NAP NAP . P 3 GDD D 1 402 10 GDD GDD . Q 4 EDO D 1 403 1 EDO EDO . R 4 EDO D 1 404 3 EDO EDO . S 2 NAP E 1 401 6 NAP NAP . T 3 GDD E 1 402 7 GDD GDD . U 3 GDD F 1 401 5 GDD GDD . V 2 NAP F 1 402 7 NAP NAP . W 2 NAP G 1 401 8 NAP NAP . X 3 GDD G 1 402 11 GDD GDD . Y 4 EDO G 1 403 4 EDO EDO . Z 2 NAP H 1 401 9 NAP NAP . AA 3 GDD H 1 402 12 GDD GDD . BA 4 EDO H 1 403 2 EDO EDO . CA 5 HOH B 1 501 2 HOH HOH . DA 5 HOH C 1 501 4 HOH HOH . EA 5 HOH E 1 501 1 HOH HOH . FA 5 HOH G 1 501 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Y 4 128.631 251.331 77.597 1 94.13 ? C1 EDO 403 G 1 HETATM 2 O O1 EDO . . . Y 4 129.331 250.099 77.322 1 93.27 ? O1 EDO 403 G 1 HETATM 3 C C2 EDO . . . Y 4 129.563 252.555 77.565 1 93.7 ? C2 EDO 403 G 1 HETATM 4 O O2 EDO . . . Y 4 128.922 253.755 78.057 1 92.28 ? O2 EDO 403 G 1 HETATM 5 H H11 EDO . . . Y 4 127.84 251.465 76.856 1 112.96 ? H11 EDO 403 G 1 HETATM 6 H H12 EDO . . . Y 4 128.162 251.265 78.58 1 112.96 ? H12 EDO 403 G 1 HETATM 7 H HO1 EDO . . . Y 4 128.698 249.369 77.291 1 111.92 ? HO1 EDO 403 G 1 HETATM 8 H H21 EDO . . . Y 4 130.446 252.347 78.173 1 112.44 ? H21 EDO 403 G 1 HETATM 9 H H22 EDO . . . Y 4 129.896 252.723 76.538 1 112.44 ? H22 EDO 403 G 1 HETATM 10 H HO2 EDO . . . Y 4 129.488 254.519 77.879 1 110.73 ? HO2 EDO 403 G 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #