data_6Q9B # _model_server_result.job_id AGoXD2lZn-Dz-Vp8fWyvEg _model_server_result.datetime_utc '2025-03-06 10:02:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":101}' # _entry.id 6Q9B # _exptl.entry_id 6Q9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 568.704 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 33 _struct_asym.id NA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 17 AK CYS 17 1_555 I SG CYS 74 AK CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 I SG CYS 94 AK CYS 94 1_555 I SG CYS 114 AK CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 L SG CYS 35 A8 CYS 35 1_555 L SG CYS 65 A8 CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 L SG CYS 45 A8 CYS 45 1_555 L SG CYS 55 A8 CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 L SG CYS 77 A8 CYS 77 1_555 L SG CYS 109 A8 CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 L SG CYS 87 A8 CYS 87 1_555 L SG CYS 99 A8 CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 M SG CYS 76 BJ CYS 76 1_555 M SG CYS 83 BJ CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 M SG CYS 112 BJ CYS 112 1_555 M SG CYS 124 BJ CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 O SG CYS 32 S5 CYS 32 1_555 O SG CYS 65 S5 CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 O SG CYS 42 S5 CYS 42 1_555 O SG CYS 55 S5 CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 V SG CYS 58 B7 CYS 58 1_555 V SG CYS 89 B7 CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 V SG CYS 68 B7 CYS 68 1_555 V SG CYS 79 B7 CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 K OG SER 44 AB SER 44 1_555 NA P1 ZMP . AB ZMP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? # _chem_comp.formula 'C25 H49 N2 O8 P S' _chem_comp.formula_weight 568.704 _chem_comp.id ZMP _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 ZMP sing 902 n n O7 P1 ZMP sing 903 n n C23 C24 ZMP sing 904 n n C23 C22 ZMP sing 905 n n P1 O6 ZMP doub 906 n n P1 O5 ZMP sing 907 n n C1 C22 ZMP sing 908 n n C1 C2 ZMP sing 909 n n C20 C18 ZMP sing 910 n n C19 C18 ZMP sing 911 n n O5 C21 ZMP sing 912 n n C21 C18 ZMP sing 913 n n C2 C3 ZMP sing 914 n n C3 C4 ZMP sing 915 n n C18 C17 ZMP sing 916 n n C4 C5 ZMP sing 917 n n O1 C10 ZMP doub 918 n n C9 C8 ZMP sing 919 n n C9 C10 ZMP sing 920 n n C6 C5 ZMP sing 921 n n C6 C7 ZMP sing 922 n n C8 C7 ZMP sing 923 n n C17 C16 ZMP sing 924 n n C17 O4 ZMP sing 925 n n C10 S1 ZMP sing 926 n n O3 C16 ZMP doub 927 n n C16 N2 ZMP sing 928 n n C12 N1 ZMP sing 929 n n C12 C11 ZMP sing 930 n n N1 C13 ZMP sing 931 n n C13 O2 ZMP doub 932 n n C13 C14 ZMP sing 933 n n C14 C15 ZMP sing 934 n n N2 C15 ZMP sing 935 n n S1 C11 ZMP sing 936 n n O7 H1 ZMP sing 937 n n C21 H3 ZMP sing 938 n n C21 H4 ZMP sing 939 n n C19 H5 ZMP sing 940 n n C19 H6 ZMP sing 941 n n C19 H7 ZMP sing 942 n n C20 H8 ZMP sing 943 n n C20 H9 ZMP sing 944 n n C20 H10 ZMP sing 945 n n C17 H11 ZMP sing 946 n n O4 H12 ZMP sing 947 n n N2 H13 ZMP sing 948 n n C15 H14 ZMP sing 949 n n C15 H15 ZMP sing 950 n n C14 H16 ZMP sing 951 n n C14 H17 ZMP sing 952 n n N1 H18 ZMP sing 953 n n C12 H19 ZMP sing 954 n n C12 H20 ZMP sing 955 n n C11 H21 ZMP sing 956 n n C11 H22 ZMP sing 957 n n C9 H23 ZMP sing 958 n n C9 H24 ZMP sing 959 n n C8 H25 ZMP sing 960 n n C8 H26 ZMP sing 961 n n C7 H27 ZMP sing 962 n n C7 H28 ZMP sing 963 n n C6 H29 ZMP sing 964 n n C6 H30 ZMP sing 965 n n C5 H31 ZMP sing 966 n n C5 H32 ZMP sing 967 n n C4 H33 ZMP sing 968 n n C4 H34 ZMP sing 969 n n C3 H35 ZMP sing 970 n n C3 H36 ZMP sing 971 n n C2 H37 ZMP sing 972 n n C2 H38 ZMP sing 973 n n C1 H39 ZMP sing 974 n n C1 H40 ZMP sing 975 n n C22 H41 ZMP sing 976 n n C22 H42 ZMP sing 977 n n C23 H43 ZMP sing 978 n n C23 H44 ZMP sing 979 n n C24 H45 ZMP sing 980 n n C24 H46 ZMP sing 981 n n C25 H47 ZMP sing 982 n n C25 H48 ZMP sing 983 n n C25 H49 ZMP sing 984 n n P1 O8 ZMP sing 985 n n O8 H2 ZMP sing 986 n n # _atom_sites.entry_id 6Q9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 3PE D6 1 501 501 3PE 3PE . EA 31 CDL D5 1 901 901 CDL CDL . FA 30 3PE D5 1 902 902 3PE 3PE . GA 30 3PE D5 1 903 702 3PE 3PE . HA 31 CDL D5 1 904 502 CDL CDL . IA 32 PC1 D4 1 701 701 PC1 PC1 . JA 30 3PE D4 1 702 703 3PE 3PE . KA 32 PC1 D4 1 703 503 PC1 PC1 . LA 31 CDL AK 1 501 501 CDL CDL . MA 31 CDL B5 1 201 502 CDL CDL . NA 33 ZMP AB 1 101 101 ZMP ZMP . OA 30 3PE A8 1 301 301 3PE 3PE . PA 30 3PE B4 1 201 506 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 ZMP . . . NA 33 437.02 356.227 385.019 1 67.1 ? O7 ZMP 101 AB 1 HETATM 2 P P1 ZMP . . . NA 33 438.179 356.185 383.912 1 67.1 ? P1 ZMP 101 AB 1 HETATM 3 O O6 ZMP . . . NA 33 439.488 356.469 384.541 1 67.1 ? O6 ZMP 101 AB 1 HETATM 4 O O5 ZMP . . . NA 33 437.794 357.426 382.985 1 67.1 ? O5 ZMP 101 AB 1 HETATM 5 C C21 ZMP . . . NA 33 437.933 357.338 381.572 1 67.1 ? C21 ZMP 101 AB 1 HETATM 6 C C18 ZMP . . . NA 33 437.898 358.75 381.012 1 67.1 ? C18 ZMP 101 AB 1 HETATM 7 C C19 ZMP . . . NA 33 436.688 359.474 381.604 1 67.1 ? C19 ZMP 101 AB 1 HETATM 8 C C20 ZMP . . . NA 33 439.193 359.454 381.422 1 67.1 ? C20 ZMP 101 AB 1 HETATM 9 C C17 ZMP . . . NA 33 437.789 358.67 379.489 1 67.1 ? C17 ZMP 101 AB 1 HETATM 10 O O4 ZMP . . . NA 33 439.089 358.433 378.949 1 67.1 ? O4 ZMP 101 AB 1 HETATM 11 C C16 ZMP . . . NA 33 437.215 359.951 378.881 1 67.1 ? C16 ZMP 101 AB 1 HETATM 12 O O3 ZMP . . . NA 33 437.84 361.008 378.892 1 67.1 ? O3 ZMP 101 AB 1 HETATM 13 N N2 ZMP . . . NA 33 436.03 359.809 378.285 1 67.1 ? N2 ZMP 101 AB 1 HETATM 14 C C15 ZMP . . . NA 33 435.357 360.941 377.639 1 67.1 ? C15 ZMP 101 AB 1 HETATM 15 C C14 ZMP . . . NA 33 435.106 360.608 376.169 1 67.1 ? C14 ZMP 101 AB 1 HETATM 16 C C13 ZMP . . . NA 33 436.441 360.493 375.433 1 67.1 ? C13 ZMP 101 AB 1 HETATM 17 O O2 ZMP . . . NA 33 437.473 360.902 375.957 1 67.1 ? O2 ZMP 101 AB 1 HETATM 18 N N1 ZMP . . . NA 33 436.418 359.967 374.2 1 67.1 ? N1 ZMP 101 AB 1 HETATM 19 C C12 ZMP . . . NA 33 435.224 359.482 373.508 1 67.1 ? C12 ZMP 101 AB 1 HETATM 20 C C11 ZMP . . . NA 33 435.625 359.164 372.069 1 67.1 ? C11 ZMP 101 AB 1 HETATM 21 S S1 ZMP . . . NA 33 436.999 357.961 371.98 1 67.1 ? S1 ZMP 101 AB 1 HETATM 22 C C10 ZMP . . . NA 33 437.767 358.524 370.544 1 67.1 ? C10 ZMP 101 AB 1 HETATM 23 O O1 ZMP . . . NA 33 438.143 359.68 370.374 1 67.1 ? O1 ZMP 101 AB 1 HETATM 24 C C9 ZMP . . . NA 33 437.929 357.475 369.451 1 67.1 ? C9 ZMP 101 AB 1 HETATM 25 C C8 ZMP . . . NA 33 439.186 357.73 368.611 1 67.1 ? C8 ZMP 101 AB 1 HETATM 26 C C7 ZMP . . . NA 33 439.243 356.759 367.418 1 67.1 ? C7 ZMP 101 AB 1 HETATM 27 C C6 ZMP . . . NA 33 438.999 355.313 367.877 1 67.1 ? C6 ZMP 101 AB 1 HETATM 28 C C5 ZMP . . . NA 33 439.186 354.344 366.708 1 67.1 ? C5 ZMP 101 AB 1 HETATM 29 C C4 ZMP . . . NA 33 439.253 352.91 367.237 1 67.1 ? C4 ZMP 101 AB 1 HETATM 30 C C3 ZMP . . . NA 33 439.208 351.943 366.054 1 67.1 ? C3 ZMP 101 AB 1 HETATM 31 C C2 ZMP . . . NA 33 439.256 350.5 366.557 1 67.1 ? C2 ZMP 101 AB 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #