data_6Q9D # _model_server_result.job_id ZAhQBxNSsdxBHskF2DbhWw _model_server_result.datetime_utc '2025-03-06 09:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":101}' # _entry.id 6Q9D # _exptl.entry_id 6Q9D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 568.704 _entity.id 24 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q9D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 24 _struct_asym.id DA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 59 S6 CYS 59 1_555 I SG CYS 87 S6 CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? covale ? covale1 Q OG SER 44 AA SER 44 1_555 DA P1 ZMP . AA ZMP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? metalc ? metalc1 A SG CYS 360 V1 CYS 359 1_555 S FE4 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A SG CYS 363 V1 CYS 362 1_555 S FE3 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A SG CYS 366 V1 CYS 365 1_555 S FE1 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 A SG CYS 406 V1 CYS 405 1_555 S FE2 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 B SG CYS 103 V2 CYS 103 1_555 U FE1 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc6 B SG CYS 108 V2 CYS 108 1_555 U FE1 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 B SG CYS 144 V2 CYS 144 1_555 U FE2 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 B SG CYS 148 V2 CYS 148 1_555 U FE2 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc9 C SG CYS 41 S1 CYS 41 1_555 X FE1 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 C SG CYS 52 S1 CYS 52 1_555 X FE1 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc11 C SG CYS 55 S1 CYS 55 1_555 X FE2 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc12 C SG CYS 69 S1 CYS 69 1_555 X FE2 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc13 C NE2 HIS 101 S1 HIS 101 1_555 V FE3 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc14 C SG CYS 105 S1 CYS 105 1_555 V FE2 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc15 C SG CYS 108 S1 CYS 108 1_555 V FE4 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc16 C SG CYS 114 S1 CYS 114 1_555 V FE1 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc17 C SG CYS 153 S1 CYS 153 1_555 W FE2 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc18 C SG CYS 156 S1 CYS 156 1_555 W FE1 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc19 C SG CYS 159 S1 CYS 159 1_555 W FE3 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc20 C SG CYS 203 S1 CYS 203 1_555 W FE4 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc21 F SG CYS 54 S7 CYS 54 1_555 Y FE4 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc22 F SG CYS 55 S7 CYS 55 1_555 Y FE3 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc23 F SG CYS 119 S7 CYS 119 1_555 Y FE1 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc24 F SG CYS 149 S7 CYS 149 1_555 Y FE2 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc25 G SG CYS 77 S8 CYS 77 1_555 AA FE3 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc26 G SG CYS 80 S8 CYS 80 1_555 AA FE4 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc27 G SG CYS 83 S8 CYS 83 1_555 AA FE2 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc28 G SG CYS 87 S8 CYS 87 1_555 Z FE4 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc29 G SG CYS 116 S8 CYS 116 1_555 Z FE2 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc30 G SG CYS 122 S8 CYS 122 1_555 Z FE3 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc31 G SG CYS 126 S8 CYS 126 1_555 AA FE1 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc32 I SG CYS 59 S6 CYS 59 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc33 I NE2 HIS 68 S6 HIS 68 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc34 I SG CYS 84 S6 CYS 84 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc35 I SG CYS 87 S6 CYS 87 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'C25 H49 N2 O8 P S' _chem_comp.formula_weight 568.704 _chem_comp.id ZMP _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 ZMP sing 526 n n O7 P1 ZMP sing 527 n n C23 C24 ZMP sing 528 n n C23 C22 ZMP sing 529 n n P1 O6 ZMP doub 530 n n P1 O5 ZMP sing 531 n n C1 C22 ZMP sing 532 n n C1 C2 ZMP sing 533 n n C20 C18 ZMP sing 534 n n C19 C18 ZMP sing 535 n n O5 C21 ZMP sing 536 n n C21 C18 ZMP sing 537 n n C2 C3 ZMP sing 538 n n C3 C4 ZMP sing 539 n n C18 C17 ZMP sing 540 n n C4 C5 ZMP sing 541 n n O1 C10 ZMP doub 542 n n C9 C8 ZMP sing 543 n n C9 C10 ZMP sing 544 n n C6 C5 ZMP sing 545 n n C6 C7 ZMP sing 546 n n C8 C7 ZMP sing 547 n n C17 C16 ZMP sing 548 n n C17 O4 ZMP sing 549 n n C10 S1 ZMP sing 550 n n O3 C16 ZMP doub 551 n n C16 N2 ZMP sing 552 n n C12 N1 ZMP sing 553 n n C12 C11 ZMP sing 554 n n N1 C13 ZMP sing 555 n n C13 O2 ZMP doub 556 n n C13 C14 ZMP sing 557 n n C14 C15 ZMP sing 558 n n N2 C15 ZMP sing 559 n n S1 C11 ZMP sing 560 n n O7 H1 ZMP sing 561 n n C21 H3 ZMP sing 562 n n C21 H4 ZMP sing 563 n n C19 H5 ZMP sing 564 n n C19 H6 ZMP sing 565 n n C19 H7 ZMP sing 566 n n C20 H8 ZMP sing 567 n n C20 H9 ZMP sing 568 n n C20 H10 ZMP sing 569 n n C17 H11 ZMP sing 570 n n O4 H12 ZMP sing 571 n n N2 H13 ZMP sing 572 n n C15 H14 ZMP sing 573 n n C15 H15 ZMP sing 574 n n C14 H16 ZMP sing 575 n n C14 H17 ZMP sing 576 n n N1 H18 ZMP sing 577 n n C12 H19 ZMP sing 578 n n C12 H20 ZMP sing 579 n n C11 H21 ZMP sing 580 n n C11 H22 ZMP sing 581 n n C9 H23 ZMP sing 582 n n C9 H24 ZMP sing 583 n n C8 H25 ZMP sing 584 n n C8 H26 ZMP sing 585 n n C7 H27 ZMP sing 586 n n C7 H28 ZMP sing 587 n n C6 H29 ZMP sing 588 n n C6 H30 ZMP sing 589 n n C5 H31 ZMP sing 590 n n C5 H32 ZMP sing 591 n n C4 H33 ZMP sing 592 n n C4 H34 ZMP sing 593 n n C3 H35 ZMP sing 594 n n C3 H36 ZMP sing 595 n n C2 H37 ZMP sing 596 n n C2 H38 ZMP sing 597 n n C1 H39 ZMP sing 598 n n C1 H40 ZMP sing 599 n n C22 H41 ZMP sing 600 n n C22 H42 ZMP sing 601 n n C23 H43 ZMP sing 602 n n C23 H44 ZMP sing 603 n n C24 H45 ZMP sing 604 n n C24 H46 ZMP sing 605 n n C25 H47 ZMP sing 606 n n C25 H48 ZMP sing 607 n n C25 H49 ZMP sing 608 n n P1 O8 ZMP sing 609 n n O8 H2 ZMP sing 610 n n # _atom_sites.entry_id 6Q9D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 SF4 V1 1 500 500 SF4 SF4 . T 20 FMN V1 1 501 501 FMN FMN . U 21 FES V2 1 300 300 FES FES . V 19 SF4 S1 1 801 801 SF4 SF4 . W 19 SF4 S1 1 802 802 SF4 SF4 . X 21 FES S1 1 803 803 FES FES . Y 19 SF4 S7 1 300 300 SF4 SF4 . Z 19 SF4 S8 1 201 502 SF4 SF4 . AA 19 SF4 S8 1 202 503 SF4 SF4 . BA 22 ZN S6 1 300 300 ZN ZN . CA 23 NDP A9 1 401 401 NDP NDP . DA 24 ZMP AA 1 101 101 ZMP ZMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 ZMP . . . DA 24 324.146 270.083 265.667 1 60.86 ? O7 ZMP 101 AA 1 HETATM 2 P P1 ZMP . . . DA 24 323.899 270.541 264.149 1 60.86 ? P1 ZMP 101 AA 1 HETATM 3 O O6 ZMP . . . DA 24 324.977 271.468 263.746 1 60.86 ? O6 ZMP 101 AA 1 HETATM 4 O O5 ZMP . . . DA 24 322.522 271.353 264.263 1 60.86 ? O5 ZMP 101 AA 1 HETATM 5 C C21 ZMP . . . DA 24 321.299 270.709 263.905 1 60.86 ? C21 ZMP 101 AA 1 HETATM 6 C C18 ZMP . . . DA 24 320.154 271.312 264.711 1 60.86 ? C18 ZMP 101 AA 1 HETATM 7 C C19 ZMP . . . DA 24 319.826 272.691 264.14 1 60.86 ? C19 ZMP 101 AA 1 HETATM 8 C C20 ZMP . . . DA 24 318.94 270.398 264.567 1 60.86 ? C20 ZMP 101 AA 1 HETATM 9 C C17 ZMP . . . DA 24 320.621 271.398 266.178 1 60.86 ? C17 ZMP 101 AA 1 HETATM 10 O O4 ZMP . . . DA 24 321.07 270.106 266.583 1 60.86 ? O4 ZMP 101 AA 1 HETATM 11 C C16 ZMP . . . DA 24 319.542 271.876 267.168 1 60.86 ? C16 ZMP 101 AA 1 HETATM 12 O O3 ZMP . . . DA 24 319.326 273.072 267.35 1 60.86 ? O3 ZMP 101 AA 1 HETATM 13 N N2 ZMP . . . DA 24 318.935 270.908 267.867 1 60.86 ? N2 ZMP 101 AA 1 HETATM 14 C C15 ZMP . . . DA 24 317.902 271.201 268.869 1 60.86 ? C15 ZMP 101 AA 1 HETATM 15 C C14 ZMP . . . DA 24 316.572 270.6 268.414 1 60.86 ? C14 ZMP 101 AA 1 HETATM 16 C C13 ZMP . . . DA 24 316.014 271.477 267.301 1 60.86 ? C13 ZMP 101 AA 1 HETATM 17 O O2 ZMP . . . DA 24 316.473 272.601 267.131 1 60.86 ? O2 ZMP 101 AA 1 HETATM 18 N N1 ZMP . . . DA 24 315.032 270.962 266.541 1 60.86 ? N1 ZMP 101 AA 1 HETATM 19 C C12 ZMP . . . DA 24 314.449 269.623 266.707 1 60.86 ? C12 ZMP 101 AA 1 HETATM 20 C C11 ZMP . . . DA 24 313.531 269.354 265.511 1 60.86 ? C11 ZMP 101 AA 1 HETATM 21 S S1 ZMP . . . DA 24 312.436 267.902 265.709 1 60.86 ? S1 ZMP 101 AA 1 HETATM 22 C C10 ZMP . . . DA 24 311.173 268.325 264.564 1 60.86 ? C10 ZMP 101 AA 1 HETATM 23 O O1 ZMP . . . DA 24 310.681 269.447 264.468 1 60.86 ? O1 ZMP 101 AA 1 HETATM 24 C C9 ZMP . . . DA 24 310.699 267.184 263.664 1 60.86 ? C9 ZMP 101 AA 1 HETATM 25 C C8 ZMP . . . DA 24 309.431 267.597 262.917 1 60.86 ? C8 ZMP 101 AA 1 HETATM 26 C C7 ZMP . . . DA 24 309.137 266.574 261.816 1 60.86 ? C7 ZMP 101 AA 1 HETATM 27 C C6 ZMP . . . DA 24 308.306 267.232 260.711 1 60.86 ? C6 ZMP 101 AA 1 HETATM 28 C C5 ZMP . . . DA 24 308.301 266.342 259.466 1 60.86 ? C5 ZMP 101 AA 1 HETATM 29 C C4 ZMP . . . DA 24 308.045 267.199 258.223 1 60.86 ? C4 ZMP 101 AA 1 HETATM 30 C C3 ZMP . . . DA 24 308.005 266.305 256.979 1 60.86 ? C3 ZMP 101 AA 1 HETATM 31 C C2 ZMP . . . DA 24 307.461 267.097 255.786 1 60.86 ? C2 ZMP 101 AA 1 HETATM 32 C C1 ZMP . . . DA 24 306.742 266.147 254.824 1 60.86 ? C1 ZMP 101 AA 1 HETATM 33 C C22 ZMP . . . DA 24 307.501 266.076 253.498 1 60.86 ? C22 ZMP 101 AA 1 HETATM 34 C C23 ZMP . . . DA 24 306.632 265.847 252.26 1 60.86 ? C23 ZMP 101 AA 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #