data_6Q9D # _model_server_result.job_id fvWOnNJAgIDQBDBBKJSEoQ _model_server_result.datetime_utc '2024-11-04 23:00:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":401}' # _entry.id 6Q9D # _exptl.entry_id 6Q9D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q9D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 23 _struct_asym.id CA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 59 S6 CYS 59 1_555 I SG CYS 87 S6 CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc1 A SG CYS 360 V1 CYS 359 1_555 S FE4 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A SG CYS 363 V1 CYS 362 1_555 S FE3 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A SG CYS 366 V1 CYS 365 1_555 S FE1 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 A SG CYS 406 V1 CYS 405 1_555 S FE2 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 B SG CYS 103 V2 CYS 103 1_555 U FE1 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc6 B SG CYS 108 V2 CYS 108 1_555 U FE1 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 B SG CYS 144 V2 CYS 144 1_555 U FE2 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 B SG CYS 148 V2 CYS 148 1_555 U FE2 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc9 C SG CYS 41 S1 CYS 41 1_555 X FE1 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 C SG CYS 52 S1 CYS 52 1_555 X FE1 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc11 C SG CYS 55 S1 CYS 55 1_555 X FE2 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc12 C SG CYS 69 S1 CYS 69 1_555 X FE2 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc13 C NE2 HIS 101 S1 HIS 101 1_555 V FE3 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc14 C SG CYS 105 S1 CYS 105 1_555 V FE2 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc15 C SG CYS 108 S1 CYS 108 1_555 V FE4 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc16 C SG CYS 114 S1 CYS 114 1_555 V FE1 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc17 C SG CYS 153 S1 CYS 153 1_555 W FE2 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc18 C SG CYS 156 S1 CYS 156 1_555 W FE1 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc19 C SG CYS 159 S1 CYS 159 1_555 W FE3 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc20 C SG CYS 203 S1 CYS 203 1_555 W FE4 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc21 F SG CYS 54 S7 CYS 54 1_555 Y FE4 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc22 F SG CYS 55 S7 CYS 55 1_555 Y FE3 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc23 F SG CYS 119 S7 CYS 119 1_555 Y FE1 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc24 F SG CYS 149 S7 CYS 149 1_555 Y FE2 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc25 G SG CYS 77 S8 CYS 77 1_555 AA FE3 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc26 G SG CYS 80 S8 CYS 80 1_555 AA FE4 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc27 G SG CYS 83 S8 CYS 83 1_555 AA FE2 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc28 G SG CYS 87 S8 CYS 87 1_555 Z FE4 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc29 G SG CYS 116 S8 CYS 116 1_555 Z FE2 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc30 G SG CYS 122 S8 CYS 122 1_555 Z FE3 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc31 G SG CYS 126 S8 CYS 126 1_555 AA FE1 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc32 I SG CYS 59 S6 CYS 59 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc33 I NE2 HIS 68 S6 HIS 68 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc34 I SG CYS 84 S6 CYS 84 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc35 I SG CYS 87 S6 CYS 87 1_555 BA ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? covale ? covale1 Q OG SER 44 AA SER 44 1_555 DA P1 ZMP . AA ZMP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Q9D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 SF4 V1 1 500 500 SF4 SF4 . T 20 FMN V1 1 501 501 FMN FMN . U 21 FES V2 1 300 300 FES FES . V 19 SF4 S1 1 801 801 SF4 SF4 . W 19 SF4 S1 1 802 802 SF4 SF4 . X 21 FES S1 1 803 803 FES FES . Y 19 SF4 S7 1 300 300 SF4 SF4 . Z 19 SF4 S8 1 201 502 SF4 SF4 . AA 19 SF4 S8 1 202 503 SF4 SF4 . BA 22 ZN S6 1 300 300 ZN ZN . CA 23 NDP A9 1 401 401 NDP NDP . DA 24 ZMP AA 1 101 101 ZMP ZMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . CA 23 285.644 277.258 224.932 1 60.86 ? PA NDP 401 A9 1 HETATM 2 O O1A NDP . . . CA 23 285.056 277.287 223.578 1 60.86 ? O1A NDP 401 A9 1 HETATM 3 O O2A NDP . . . CA 23 285.16 276.03 225.677 1 60.86 ? O2A NDP 401 A9 1 HETATM 4 O O5B NDP . . . CA 23 285.338 278.558 225.823 1 60.86 ? O5B NDP 401 A9 1 HETATM 5 C C5B NDP . . . CA 23 284.473 279.585 225.296 1 60.86 ? C5B NDP 401 A9 1 HETATM 6 C C4B NDP . . . CA 23 283.337 279.812 226.257 1 60.86 ? C4B NDP 401 A9 1 HETATM 7 O O4B NDP . . . CA 23 282.352 280.674 225.645 1 60.86 ? O4B NDP 401 A9 1 HETATM 8 C C3B NDP . . . CA 23 282.575 278.555 226.66 1 60.86 ? C3B NDP 401 A9 1 HETATM 9 O O3B NDP . . . CA 23 281.836 278.786 227.852 1 60.86 ? O3B NDP 401 A9 1 HETATM 10 C C2B NDP . . . CA 23 281.629 278.457 225.472 1 60.86 ? C2B NDP 401 A9 1 HETATM 11 O O2B NDP . . . CA 23 280.559 277.506 225.667 1 60.86 ? O2B NDP 401 A9 1 HETATM 12 C C1B NDP . . . CA 23 281.203 279.913 225.326 1 60.86 ? C1B NDP 401 A9 1 HETATM 13 N N9A NDP . . . CA 23 280.784 280.257 223.975 1 60.86 ? N9A NDP 401 A9 1 HETATM 14 C C8A NDP . . . CA 23 281.512 280.112 222.823 1 60.86 ? C8A NDP 401 A9 1 HETATM 15 N N7A NDP . . . CA 23 280.876 280.485 221.741 1 60.86 ? N7A NDP 401 A9 1 HETATM 16 C C5A NDP . . . CA 23 279.645 280.907 222.209 1 60.86 ? C5A NDP 401 A9 1 HETATM 17 C C6A NDP . . . CA 23 278.501 281.405 221.561 1 60.86 ? C6A NDP 401 A9 1 HETATM 18 N N6A NDP . . . CA 23 278.414 281.583 220.243 1 60.86 ? N6A NDP 401 A9 1 HETATM 19 N N1A NDP . . . CA 23 277.43 281.713 222.323 1 60.86 ? N1A NDP 401 A9 1 HETATM 20 C C2A NDP . . . CA 23 277.507 281.535 223.645 1 60.86 ? C2A NDP 401 A9 1 HETATM 21 N N3A NDP . . . CA 23 278.532 281.076 224.367 1 60.86 ? N3A NDP 401 A9 1 HETATM 22 C C4A NDP . . . CA 23 279.574 280.776 223.586 1 60.86 ? C4A NDP 401 A9 1 HETATM 23 O O3 NDP . . . CA 23 287.228 277.169 224.834 1 60.86 ? O3 NDP 401 A9 1 HETATM 24 P PN NDP . . . CA 23 288.355 277.783 225.773 1 60.86 ? PN NDP 401 A9 1 HETATM 25 O O1N NDP . . . CA 23 287.908 277.716 227.178 1 60.86 ? O1N NDP 401 A9 1 HETATM 26 O O2N NDP . . . CA 23 289.621 276.965 225.585 1 60.86 ? O2N NDP 401 A9 1 HETATM 27 O O5D NDP . . . CA 23 288.635 279.261 225.285 1 60.86 ? O5D NDP 401 A9 1 HETATM 28 C C5D NDP . . . CA 23 288.146 280.429 225.969 1 60.86 ? C5D NDP 401 A9 1 HETATM 29 C C4D NDP . . . CA 23 288.778 281.658 225.367 1 60.86 ? C4D NDP 401 A9 1 HETATM 30 O O4D NDP . . . CA 23 290.213 281.569 225.483 1 60.86 ? O4D NDP 401 A9 1 HETATM 31 C C3D NDP . . . CA 23 288.468 281.903 223.885 1 60.86 ? C3D NDP 401 A9 1 HETATM 32 O O3D NDP . . . CA 23 287.927 283.201 223.676 1 60.86 ? O3D NDP 401 A9 1 HETATM 33 C C2D NDP . . . CA 23 289.826 281.749 223.189 1 60.86 ? C2D NDP 401 A9 1 HETATM 34 O O2D NDP . . . CA 23 289.983 282.7 222.145 1 60.86 ? O2D NDP 401 A9 1 HETATM 35 C C1D NDP . . . CA 23 290.796 282.086 224.31 1 60.86 ? C1D NDP 401 A9 1 HETATM 36 N N1N NDP . . . CA 23 292.115 281.487 224.154 1 60.86 ? N1N NDP 401 A9 1 HETATM 37 C C2N NDP . . . CA 23 292.27 280.126 224.193 1 60.86 ? C2N NDP 401 A9 1 HETATM 38 C C3N NDP . . . CA 23 293.461 279.518 224.055 1 60.86 ? C3N NDP 401 A9 1 HETATM 39 C C7N NDP . . . CA 23 293.472 278.05 224.115 1 60.86 ? C7N NDP 401 A9 1 HETATM 40 O O7N NDP . . . CA 23 292.812 277.47 224.99 1 60.86 ? O7N NDP 401 A9 1 HETATM 41 N N7N NDP . . . CA 23 294.191 277.399 223.21 1 60.86 ? N7N NDP 401 A9 1 HETATM 42 C C4N NDP . . . CA 23 294.696 280.312 223.847 1 60.86 ? C4N NDP 401 A9 1 HETATM 43 C C5N NDP . . . CA 23 294.426 281.769 223.837 1 60.86 ? C5N NDP 401 A9 1 HETATM 44 C C6N NDP . . . CA 23 293.215 282.27 223.98 1 60.86 ? C6N NDP 401 A9 1 HETATM 45 P P2B NDP . . . CA 23 279.119 277.676 226.391 1 60.86 ? P2B NDP 401 A9 1 HETATM 46 O O1X NDP . . . CA 23 278.602 276.335 226.745 1 60.86 ? O1X NDP 401 A9 1 HETATM 47 O O2X NDP . . . CA 23 279.313 278.554 227.612 1 60.86 ? O2X NDP 401 A9 1 HETATM 48 O O3X NDP . . . CA 23 278.224 278.418 225.407 1 60.86 ? O3X NDP 401 A9 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #