data_6Q9N # _model_server_result.job_id 5U4jWYkoNG7qgL48iKeWQQ _model_server_result.datetime_utc '2024-11-02 04:30:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":704}' # _entry.id 6Q9N # _exptl.entry_id 6Q9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q9N _cell.length_a 81.17 _cell.length_b 102.876 _cell.length_c 187.367 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,N 1 1 B,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 377 A SER 403 1_555 D C01 JPP . A JPP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? metalc ? metalc1 A O GLY 109 A GLY 135 1_555 G CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc2 A ND1 HIS 117 A HIS 143 1_555 H CD CD . A CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A OE1 GLU 119 A GLU 145 1_555 H CD CD . A CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 A OE1 GLU 119 A GLU 145 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc5 A OE2 GLU 119 A GLU 145 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A OD1 ASP 183 A ASP 209 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 A OD2 ASP 183 A ASP 209 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 A NE2 HIS 285 A HIS 311 1_555 G CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc9 G CD CD . A CD 705 1_555 B OD1 ASP 183 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc10 G CD CD . A CD 705 1_555 B OD2 ASP 183 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 H CD CD . A CD 706 1_555 B OE1 GLU 119 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc12 H CD CD . A CD 706 1_555 O O HOH . B HOH 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc13 B O GLY 109 B GLY 135 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc14 B ND1 HIS 117 B HIS 143 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc15 B OE2 GLU 119 B GLU 145 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc16 B NE2 HIS 285 B HIS 311 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Q9N _atom_sites.fract_transf_matrix[1][1] 0.01232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QLN A 1 701 701 QLN QLN . D 3 JPP A 1 702 403 JPP PA4 . E 4 CL A 1 703 3 CL CL . F 4 CL A 1 704 4 CL CL . G 5 CD A 1 705 1 CD CD . H 5 CD A 1 706 4 CD CD . I 6 MUR A 1 707 1 MUR MUR . J 4 CL B 1 701 1 CL CL . K 4 CL B 1 702 2 CL CL . L 5 CD B 1 703 2 CD CD . M 5 CD B 1 704 3 CD CD . N 7 HOH A 1 801 21 HOH HOH . N 7 HOH A 2 802 43 HOH HOH . N 7 HOH A 3 803 38 HOH HOH . N 7 HOH A 4 804 44 HOH HOH . N 7 HOH A 5 805 15 HOH HOH . N 7 HOH A 6 806 1 HOH HOH . N 7 HOH A 7 807 65 HOH HOH . N 7 HOH A 8 808 17 HOH HOH . N 7 HOH A 9 809 3 HOH HOH . N 7 HOH A 10 810 5 HOH HOH . N 7 HOH A 11 811 45 HOH HOH . N 7 HOH A 12 812 84 HOH HOH . N 7 HOH A 13 813 49 HOH HOH . N 7 HOH A 14 814 70 HOH HOH . N 7 HOH A 15 815 79 HOH HOH . N 7 HOH A 16 816 23 HOH HOH . N 7 HOH A 17 817 42 HOH HOH . N 7 HOH A 18 818 32 HOH HOH . N 7 HOH A 19 819 6 HOH HOH . N 7 HOH A 20 820 30 HOH HOH . N 7 HOH A 21 821 7 HOH HOH . N 7 HOH A 22 822 10 HOH HOH . N 7 HOH A 23 823 76 HOH HOH . N 7 HOH A 24 824 53 HOH HOH . N 7 HOH A 25 825 57 HOH HOH . N 7 HOH A 26 826 77 HOH HOH . N 7 HOH A 27 827 78 HOH HOH . N 7 HOH A 28 828 46 HOH HOH . N 7 HOH A 29 829 13 HOH HOH . N 7 HOH A 30 830 52 HOH HOH . N 7 HOH A 31 831 8 HOH HOH . N 7 HOH A 32 832 80 HOH HOH . N 7 HOH A 33 833 88 HOH HOH . N 7 HOH A 34 834 62 HOH HOH . N 7 HOH A 35 835 72 HOH HOH . N 7 HOH A 36 836 4 HOH HOH . N 7 HOH A 37 837 39 HOH HOH . N 7 HOH A 38 838 40 HOH HOH . N 7 HOH A 39 839 50 HOH HOH . N 7 HOH A 40 840 87 HOH HOH . N 7 HOH A 41 841 64 HOH HOH . N 7 HOH A 42 842 28 HOH HOH . N 7 HOH A 43 843 47 HOH HOH . N 7 HOH A 44 844 31 HOH HOH . N 7 HOH A 45 845 18 HOH HOH . N 7 HOH A 46 846 59 HOH HOH . N 7 HOH A 47 847 54 HOH HOH . N 7 HOH A 48 848 89 HOH HOH . N 7 HOH A 49 849 37 HOH HOH . N 7 HOH A 50 850 19 HOH HOH . N 7 HOH A 51 851 68 HOH HOH . N 7 HOH A 52 852 69 HOH HOH . N 7 HOH A 53 853 35 HOH HOH . N 7 HOH A 54 854 60 HOH HOH . N 7 HOH A 55 855 61 HOH HOH . N 7 HOH A 56 856 24 HOH HOH . N 7 HOH A 57 857 20 HOH HOH . N 7 HOH A 58 858 67 HOH HOH . N 7 HOH A 59 859 71 HOH HOH . O 7 HOH B 1 801 16 HOH HOH . O 7 HOH B 2 802 11 HOH HOH . O 7 HOH B 3 803 48 HOH HOH . O 7 HOH B 4 804 58 HOH HOH . O 7 HOH B 5 805 51 HOH HOH . O 7 HOH B 6 806 2 HOH HOH . O 7 HOH B 7 807 83 HOH HOH . O 7 HOH B 8 808 22 HOH HOH . O 7 HOH B 9 809 36 HOH HOH . O 7 HOH B 10 810 34 HOH HOH . O 7 HOH B 11 811 9 HOH HOH . O 7 HOH B 12 812 26 HOH HOH . O 7 HOH B 13 813 66 HOH HOH . O 7 HOH B 14 814 63 HOH HOH . O 7 HOH B 15 815 41 HOH HOH . O 7 HOH B 16 816 73 HOH HOH . O 7 HOH B 17 817 33 HOH HOH . O 7 HOH B 18 818 75 HOH HOH . O 7 HOH B 19 819 85 HOH HOH . O 7 HOH B 20 820 74 HOH HOH . O 7 HOH B 21 821 25 HOH HOH . O 7 HOH B 22 822 81 HOH HOH . O 7 HOH B 23 823 82 HOH HOH . O 7 HOH B 24 824 27 HOH HOH . O 7 HOH B 25 825 29 HOH HOH . O 7 HOH B 26 826 55 HOH HOH . O 7 HOH B 27 827 14 HOH HOH . O 7 HOH B 28 828 12 HOH HOH . O 7 HOH B 29 829 86 HOH HOH . O 7 HOH B 30 830 56 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 5 _atom_site.Cartn_x -30.758 _atom_site.Cartn_y -10.103 _atom_site.Cartn_z 76.32 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 704 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #