data_6Q9N
#
_model_server_result.job_id            qVD-clvN7CJuCO6l_qIDRA 
_model_server_result.datetime_utc      '2024-11-02 04:22:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q9n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":707}' 
#
_entry.id    6Q9N 
#
_exptl.entry_id    6Q9N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              251.234 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'beta-muramic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q9N 
_cell.length_a            81.17 
_cell.length_b            102.876 
_cell.length_c            187.367 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q9N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 377 A SER 403 1_555 D C01 JPP . A JPP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
metalc ? metalc1 A O GLY 109 A GLY 135 1_555 G CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc2 A ND1 HIS 117 A HIS 143 1_555 H CD CD . A CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc3 A OE1 GLU 119 A GLU 145 1_555 H CD CD . A CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc4 A OE1 GLU 119 A GLU 145 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc5 A OE2 GLU 119 A GLU 145 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc6 A OD1 ASP 183 A ASP 209 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc7 A OD2 ASP 183 A ASP 209 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc8 A NE2 HIS 285 A HIS 311 1_555 G CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc9 G CD CD . A CD 705 1_555 B OD1 ASP 183 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc10 G CD CD . A CD 705 1_555 B OD2 ASP 183 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc11 H CD CD . A CD 706 1_555 B OE1 GLU 119 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc12 H CD CD . A CD 706 1_555 O O HOH . B HOH 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc13 B O GLY 109 B GLY 135 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc14 B ND1 HIS 117 B HIS 143 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc15 B OE2 GLU 119 B GLU 145 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
metalc ? metalc16 B NE2 HIS 285 B HIS 311 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
#
_chem_comp.formula           'C9 H17 N O7' 
_chem_comp.formula_weight    251.234 
_chem_comp.id                MUR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'beta-muramic acid' 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     'muramic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MUR sing 291 n n 
C1 C2 MUR sing 292 n n 
C1 O5 MUR sing 293 n n 
C1 H1 MUR sing 294 n n 
O1 HO1 MUR sing 295 n n 
C2 N2 MUR sing 296 n n 
C2 C3 MUR sing 297 n n 
C2 H2 MUR sing 298 n n 
N2 HN21 MUR sing 299 n n 
N2 HN22 MUR sing 300 n n 
C3 O3 MUR sing 301 n n 
C3 C4 MUR sing 302 n n 
C3 H3 MUR sing 303 n n 
O3 C7 MUR sing 304 n n 
C4 O4 MUR sing 305 n n 
C4 C5 MUR sing 306 n n 
C4 H4 MUR sing 307 n n 
O4 HO4 MUR sing 308 n n 
C5 O5 MUR sing 309 n n 
C5 C6 MUR sing 310 n n 
C5 H5 MUR sing 311 n n 
C6 O6 MUR sing 312 n n 
C6 H61 MUR sing 313 n n 
C6 H62 MUR sing 314 n n 
O6 HO6 MUR sing 315 n n 
C7 C8 MUR sing 316 n n 
C7 C9 MUR sing 317 n n 
C7 H7 MUR sing 318 n n 
C8 O8 MUR doub 319 n n 
C8 O9 MUR sing 320 n n 
O9 HO9 MUR sing 321 n n 
C9 H91 MUR sing 322 n n 
C9 H92 MUR sing 323 n n 
C9 H93 MUR sing 324 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MUR b-D-GlcpN3<C3O2> 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MUR Mur 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6Q9N 
_atom_sites.fract_transf_matrix[1][1]    0.01232 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005337 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 QLN A 1 701 701 QLN QLN . 
D 3 JPP A 1 702 403 JPP PA4 . 
E 4 CL A 1 703 3 CL CL . 
F 4 CL A 1 704 4 CL CL . 
G 5 CD A 1 705 1 CD CD . 
H 5 CD A 1 706 4 CD CD . 
I 6 MUR A 1 707 1 MUR MUR . 
J 4 CL B 1 701 1 CL CL . 
K 4 CL B 1 702 2 CL CL . 
L 5 CD B 1 703 2 CD CD . 
M 5 CD B 1 704 3 CD CD . 
N 7 HOH A 1 801 21 HOH HOH . 
N 7 HOH A 2 802 43 HOH HOH . 
N 7 HOH A 3 803 38 HOH HOH . 
N 7 HOH A 4 804 44 HOH HOH . 
N 7 HOH A 5 805 15 HOH HOH . 
N 7 HOH A 6 806 1 HOH HOH . 
N 7 HOH A 7 807 65 HOH HOH . 
N 7 HOH A 8 808 17 HOH HOH . 
N 7 HOH A 9 809 3 HOH HOH . 
N 7 HOH A 10 810 5 HOH HOH . 
N 7 HOH A 11 811 45 HOH HOH . 
N 7 HOH A 12 812 84 HOH HOH . 
N 7 HOH A 13 813 49 HOH HOH . 
N 7 HOH A 14 814 70 HOH HOH . 
N 7 HOH A 15 815 79 HOH HOH . 
N 7 HOH A 16 816 23 HOH HOH . 
N 7 HOH A 17 817 42 HOH HOH . 
N 7 HOH A 18 818 32 HOH HOH . 
N 7 HOH A 19 819 6 HOH HOH . 
N 7 HOH A 20 820 30 HOH HOH . 
N 7 HOH A 21 821 7 HOH HOH . 
N 7 HOH A 22 822 10 HOH HOH . 
N 7 HOH A 23 823 76 HOH HOH . 
N 7 HOH A 24 824 53 HOH HOH . 
N 7 HOH A 25 825 57 HOH HOH . 
N 7 HOH A 26 826 77 HOH HOH . 
N 7 HOH A 27 827 78 HOH HOH . 
N 7 HOH A 28 828 46 HOH HOH . 
N 7 HOH A 29 829 13 HOH HOH . 
N 7 HOH A 30 830 52 HOH HOH . 
N 7 HOH A 31 831 8 HOH HOH . 
N 7 HOH A 32 832 80 HOH HOH . 
N 7 HOH A 33 833 88 HOH HOH . 
N 7 HOH A 34 834 62 HOH HOH . 
N 7 HOH A 35 835 72 HOH HOH . 
N 7 HOH A 36 836 4 HOH HOH . 
N 7 HOH A 37 837 39 HOH HOH . 
N 7 HOH A 38 838 40 HOH HOH . 
N 7 HOH A 39 839 50 HOH HOH . 
N 7 HOH A 40 840 87 HOH HOH . 
N 7 HOH A 41 841 64 HOH HOH . 
N 7 HOH A 42 842 28 HOH HOH . 
N 7 HOH A 43 843 47 HOH HOH . 
N 7 HOH A 44 844 31 HOH HOH . 
N 7 HOH A 45 845 18 HOH HOH . 
N 7 HOH A 46 846 59 HOH HOH . 
N 7 HOH A 47 847 54 HOH HOH . 
N 7 HOH A 48 848 89 HOH HOH . 
N 7 HOH A 49 849 37 HOH HOH . 
N 7 HOH A 50 850 19 HOH HOH . 
N 7 HOH A 51 851 68 HOH HOH . 
N 7 HOH A 52 852 69 HOH HOH . 
N 7 HOH A 53 853 35 HOH HOH . 
N 7 HOH A 54 854 60 HOH HOH . 
N 7 HOH A 55 855 61 HOH HOH . 
N 7 HOH A 56 856 24 HOH HOH . 
N 7 HOH A 57 857 20 HOH HOH . 
N 7 HOH A 58 858 67 HOH HOH . 
N 7 HOH A 59 859 71 HOH HOH . 
O 7 HOH B 1 801 16 HOH HOH . 
O 7 HOH B 2 802 11 HOH HOH . 
O 7 HOH B 3 803 48 HOH HOH . 
O 7 HOH B 4 804 58 HOH HOH . 
O 7 HOH B 5 805 51 HOH HOH . 
O 7 HOH B 6 806 2 HOH HOH . 
O 7 HOH B 7 807 83 HOH HOH . 
O 7 HOH B 8 808 22 HOH HOH . 
O 7 HOH B 9 809 36 HOH HOH . 
O 7 HOH B 10 810 34 HOH HOH . 
O 7 HOH B 11 811 9 HOH HOH . 
O 7 HOH B 12 812 26 HOH HOH . 
O 7 HOH B 13 813 66 HOH HOH . 
O 7 HOH B 14 814 63 HOH HOH . 
O 7 HOH B 15 815 41 HOH HOH . 
O 7 HOH B 16 816 73 HOH HOH . 
O 7 HOH B 17 817 33 HOH HOH . 
O 7 HOH B 18 818 75 HOH HOH . 
O 7 HOH B 19 819 85 HOH HOH . 
O 7 HOH B 20 820 74 HOH HOH . 
O 7 HOH B 21 821 25 HOH HOH . 
O 7 HOH B 22 822 81 HOH HOH . 
O 7 HOH B 23 823 82 HOH HOH . 
O 7 HOH B 24 824 27 HOH HOH . 
O 7 HOH B 25 825 29 HOH HOH . 
O 7 HOH B 26 826 55 HOH HOH . 
O 7 HOH B 27 827 14 HOH HOH . 
O 7 HOH B 28 828 12 HOH HOH . 
O 7 HOH B 29 829 86 HOH HOH . 
O 7 HOH B 30 830 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MUR . . . I 6 -19.661 -18.686 52.013 1 80.66 ? C1 MUR 707 A 1 
HETATM 2 O O1 MUR . . . I 6 -19.397 -20.047 51.871 1 82.26 ? O1 MUR 707 A 1 
HETATM 3 C C2 MUR . . . I 6 -20.837 -18.474 52.986 1 83.21 ? C2 MUR 707 A 1 
HETATM 4 N N2 MUR . . . I 6 -22.125 -18.477 52.262 1 77.39 ? N2 MUR 707 A 1 
HETATM 5 C C3 MUR . . . I 6 -20.744 -17.193 53.846 1 88.36 ? C3 MUR 707 A 1 
HETATM 6 O O3 MUR . . . I 6 -21.186 -17.465 55.194 1 94 ? O3 MUR 707 A 1 
HETATM 7 C C4 MUR . . . I 6 -19.362 -16.536 53.914 1 86.21 ? C4 MUR 707 A 1 
HETATM 8 O O4 MUR . . . I 6 -19.531 -15.127 54.071 1 78.5 ? O4 MUR 707 A 1 
HETATM 9 C C5 MUR . . . I 6 -18.485 -16.742 52.682 1 83.28 ? C5 MUR 707 A 1 
HETATM 10 O O5 MUR . . . I 6 -18.41 -18.145 52.39 1 81.8 ? O5 MUR 707 A 1 
HETATM 11 C C6 MUR . . . I 6 -17.063 -16.286 52.904 1 83.2 ? C6 MUR 707 A 1 
HETATM 12 O O6 MUR . . . I 6 -16.397 -17.128 53.848 1 76.46 ? O6 MUR 707 A 1 
HETATM 13 C C7 MUR . . . I 6 -21.013 -18.771 55.775 1 99.23 ? C7 MUR 707 A 1 
HETATM 14 C C8 MUR . . . I 6 -19.54 -19.119 56.084 1 97.95 ? C8 MUR 707 A 1 
HETATM 15 O O8 MUR . . . I 6 -18.958 -19.911 55.308 1 89.45 ? O8 MUR 707 A 1 
HETATM 16 O O9 MUR . . . I 6 -19.023 -18.601 57.1 1 101.61 ? O9 MUR 707 A 1 
HETATM 17 C C9 MUR . . . I 6 -21.83 -18.796 57.05 1 99.55 ? C9 MUR 707 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#