data_6Q9U # _model_server_result.job_id Lz5kaRWW7BmiOkeo2htm6Q _model_server_result.datetime_utc '2025-07-05 00:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6Q9U # _exptl.entry_id 6Q9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 544.992 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(4~{S})-5-(5-chloranyl-2-oxidanylidene-1~{H}-pyridin-3-yl)-2-[2-(dimethylamino)-4-methoxy-pyrimidin-5-yl]-6-oxidanylidene-3-propan-2-yl-4~{H}-pyrrolo[3,4-c]pyrazol-4-yl]benzenecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q9U _cell.length_a 45.403 _cell.length_b 45.403 _cell.length_c 55.825 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H25 Cl N8 O3' _chem_comp.formula_weight 544.992 _chem_comp.id HRE _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(4~{S})-5-(5-chloranyl-2-oxidanylidene-1~{H}-pyridin-3-yl)-2-[2-(dimethylamino)-4-methoxy-pyrimidin-5-yl]-6-oxidanylidene-3-propan-2-yl-4~{H}-pyrrolo[3,4-c]pyrazol-4-yl]benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C35 HRE sing 152 n n N31 C30 HRE trip 153 n n C34 C35 HRE doub 154 n n C34 N36 HRE sing 155 n n C35 C37 HRE sing 156 n n C30 C25 HRE sing 157 n n N36 C33 HRE sing 158 n n C27 C25 HRE doub 159 n y C27 C24 HRE sing 160 n y C37 C32 HRE doub 161 n n C25 C26 HRE sing 162 n y C24 C23 HRE doub 163 n y C33 C32 HRE sing 164 n n C33 O38 HRE doub 165 n n C32 N20 HRE sing 166 n n C26 C28 HRE doub 167 n y C23 C28 HRE sing 168 n y C23 C21 HRE sing 169 n n N20 C21 HRE sing 170 n n N20 C19 HRE sing 171 n n C21 C17 HRE sing 172 n n C19 O22 HRE doub 173 n n C19 C18 HRE sing 174 n n C17 C18 HRE sing 175 n y C17 C9 HRE doub 176 n y C18 N8 HRE doub 177 n y C11 C10 HRE sing 178 n n C12 C10 HRE sing 179 n n C9 C10 HRE sing 180 n n C9 N7 HRE sing 181 n y N8 N7 HRE sing 182 n y N7 C6 HRE sing 183 n n O13 C14 HRE sing 184 n n O13 C5 HRE sing 185 n n C6 C5 HRE doub 186 n y C6 C1 HRE sing 187 n y C5 N4 HRE sing 188 n y C1 N2 HRE doub 189 n y N4 C3 HRE doub 190 n y N2 C3 HRE sing 191 n y C3 N15 HRE sing 192 n n N15 C16 HRE sing 193 n n N15 C29 HRE sing 194 n n C1 H1 HRE sing 195 n n C11 H2 HRE sing 196 n n C11 H3 HRE sing 197 n n C11 H4 HRE sing 198 n n C12 H5 HRE sing 199 n n C12 H6 HRE sing 200 n n C12 H7 HRE sing 201 n n C14 H8 HRE sing 202 n n C14 H9 HRE sing 203 n n C14 H10 HRE sing 204 n n C16 H11 HRE sing 205 n n C16 H12 HRE sing 206 n n C16 H13 HRE sing 207 n n C21 H14 HRE sing 208 n n C24 H15 HRE sing 209 n n C26 H16 HRE sing 210 n n C27 H17 HRE sing 211 n n C28 H18 HRE sing 212 n n C29 H19 HRE sing 213 n n C29 H20 HRE sing 214 n n C29 H21 HRE sing 215 n n C10 H22 HRE sing 216 n n C34 H24 HRE sing 217 n n C37 H25 HRE sing 218 n n N36 H23 HRE sing 219 n n # _atom_sites.entry_id 6Q9U _atom_sites.fract_transf_matrix[1][1] 0.022025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HRE A 1 201 1 HRE LI1 . C 3 O4B A 1 202 1 O4B 18C . D 4 CL A 1 203 1 CL CL . E 5 HOH A 1 301 25 HOH HOH . E 5 HOH A 2 302 23 HOH HOH . E 5 HOH A 3 303 7 HOH HOH . E 5 HOH A 4 304 6 HOH HOH . E 5 HOH A 5 305 32 HOH HOH . E 5 HOH A 6 306 1 HOH HOH . E 5 HOH A 7 307 17 HOH HOH . E 5 HOH A 8 308 11 HOH HOH . E 5 HOH A 9 309 31 HOH HOH . E 5 HOH A 10 310 3 HOH HOH . E 5 HOH A 11 311 44 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 16 HOH HOH . E 5 HOH A 14 314 2 HOH HOH . E 5 HOH A 15 315 10 HOH HOH . E 5 HOH A 16 316 9 HOH HOH . E 5 HOH A 17 317 29 HOH HOH . E 5 HOH A 18 318 30 HOH HOH . E 5 HOH A 19 319 8 HOH HOH . E 5 HOH A 20 320 5 HOH HOH . E 5 HOH A 21 321 15 HOH HOH . E 5 HOH A 22 322 42 HOH HOH . E 5 HOH A 23 323 41 HOH HOH . E 5 HOH A 24 324 28 HOH HOH . E 5 HOH A 25 325 26 HOH HOH . E 5 HOH A 26 326 37 HOH HOH . E 5 HOH A 27 327 36 HOH HOH . E 5 HOH A 28 328 45 HOH HOH . E 5 HOH A 29 329 19 HOH HOH . E 5 HOH A 30 330 46 HOH HOH . E 5 HOH A 31 331 27 HOH HOH . E 5 HOH A 32 332 14 HOH HOH . E 5 HOH A 33 333 34 HOH HOH . E 5 HOH A 34 334 38 HOH HOH . E 5 HOH A 35 335 43 HOH HOH . E 5 HOH A 36 336 4 HOH HOH . E 5 HOH A 37 337 35 HOH HOH . E 5 HOH A 38 338 24 HOH HOH . E 5 HOH A 39 339 40 HOH HOH . E 5 HOH A 40 340 33 HOH HOH . E 5 HOH A 41 341 13 HOH HOH . E 5 HOH A 42 342 21 HOH HOH . E 5 HOH A 43 343 39 HOH HOH . E 5 HOH A 44 344 20 HOH HOH . E 5 HOH A 45 345 18 HOH HOH . E 5 HOH A 46 346 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HRE . . . B 2 -9.617 1.647 2.502 1 37.85 ? C1 HRE 201 A 1 HETATM 2 C C3 HRE . . . B 2 -11.918 1.976 2.169 1 37.43 ? C3 HRE 201 A 1 HETATM 3 C C11 HRE . . . B 2 -7.057 -1.055 -0.27 1 40.61 ? C11 HRE 201 A 1 HETATM 4 C C12 HRE . . . B 2 -9.221 -2.388 0.212 1 40.95 ? C12 HRE 201 A 1 HETATM 5 C C14 HRE . . . B 2 -12.516 -2.182 2.303 1 38.17 ? C14 HRE 201 A 1 HETATM 6 C C16 HRE . . . B 2 -14.244 2.327 1.515 1 36.13 ? C16 HRE 201 A 1 HETATM 7 C C17 HRE . . . B 2 -7.057 -1.739 2.794 1 43.57 ? C17 HRE 201 A 1 HETATM 8 C C18 HRE . . . B 2 -7.258 -1.368 4.148 1 43.56 ? C18 HRE 201 A 1 HETATM 9 C C19 HRE . . . B 2 -6.229 -1.991 4.948 1 44.48 ? C19 HRE 201 A 1 HETATM 10 C C21 HRE . . . B 2 -5.854 -2.643 2.687 1 44.71 ? C21 HRE 201 A 1 HETATM 11 C C23 HRE . . . B 2 -6.296 -4.057 2.291 1 43.89 ? C23 HRE 201 A 1 HETATM 12 C C24 HRE . . . B 2 -5.888 -4.669 1.09 1 43.34 ? C24 HRE 201 A 1 HETATM 13 C C25 HRE . . . B 2 -7.126 -6.668 1.716 1 42.23 ? C25 HRE 201 A 1 HETATM 14 C C26 HRE . . . B 2 -7.52 -6.066 2.917 1 42.91 ? C26 HRE 201 A 1 HETATM 15 C C27 HRE . . . B 2 -6.314 -5.979 0.799 1 42.44 ? C27 HRE 201 A 1 HETATM 16 C C28 HRE . . . B 2 -7.1 -4.767 3.198 1 43.54 ? C28 HRE 201 A 1 HETATM 17 C C29 HRE . . . B 2 -12.718 4.284 1.925 1 37.78 ? C29 HRE 201 A 1 HETATM 18 C C30 HRE . . . B 2 -7.595 -8.004 1.476 1 41.87 ? C30 HRE 201 A 1 HETATM 19 N N2 HRE . . . B 2 -10.661 2.448 2.232 1 37.72 ? N2 HRE 201 A 1 HETATM 20 N N4 HRE . . . B 2 -12.143 0.655 2.386 1 38.58 ? N4 HRE 201 A 1 HETATM 21 C C5 HRE . . . B 2 -11.136 -0.209 2.656 1 38.55 ? C5 HRE 201 A 1 HETATM 22 C C6 HRE . . . B 2 -9.832 0.292 2.722 1 39.47 ? C6 HRE 201 A 1 HETATM 23 N N7 HRE . . . B 2 -8.756 -0.474 2.99 1 41.09 ? N7 HRE 201 A 1 HETATM 24 N N8 HRE . . . B 2 -8.261 -0.619 4.234 1 42.25 ? N8 HRE 201 A 1 HETATM 25 C C9 HRE . . . B 2 -8.037 -1.127 2.101 1 41.92 ? C9 HRE 201 A 1 HETATM 26 C C10 HRE . . . B 2 -8.322 -1.188 0.607 1 41 ? C10 HRE 201 A 1 HETATM 27 O O13 HRE . . . B 2 -11.356 -1.569 2.887 1 38.52 ? O13 HRE 201 A 1 HETATM 28 N N15 HRE . . . B 2 -12.932 2.834 1.885 1 37.02 ? N15 HRE 201 A 1 HETATM 29 N N20 HRE . . . B 2 -5.412 -2.71 4.111 1 46.12 ? N20 HRE 201 A 1 HETATM 30 O O22 HRE . . . B 2 -6.196 -1.82 6.151 1 43.92 ? O22 HRE 201 A 1 HETATM 31 N N31 HRE . . . B 2 -7.978 -9.078 1.293 1 41.07 ? N31 HRE 201 A 1 HETATM 32 C C32 HRE . . . B 2 -4.309 -3.436 4.518 1 48.45 ? C32 HRE 201 A 1 HETATM 33 C C33 HRE . . . B 2 -2.932 -3.363 3.909 1 49.15 ? C33 HRE 201 A 1 HETATM 34 C C34 HRE . . . B 2 -2.048 -4.912 5.497 1 51.04 ? C34 HRE 201 A 1 HETATM 35 C C35 HRE . . . B 2 -3.244 -5.016 6.075 1 51.29 ? C35 HRE 201 A 1 HETATM 36 N N36 HRE . . . B 2 -1.912 -4.1 4.427 1 50.35 ? N36 HRE 201 A 1 HETATM 37 C C37 HRE . . . B 2 -4.392 -4.257 5.575 1 50.38 ? C37 HRE 201 A 1 HETATM 38 O O38 HRE . . . B 2 -2.675 -2.663 2.937 1 49.18 ? O38 HRE 201 A 1 HETATM 39 CL CL HRE . . . B 2 -3.494 -6.021 7.477 1 56.37 ? CL HRE 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #