data_6QA6
#
_model_server_result.job_id            E9mOoZ3DlN3tHvVhza8r3Q 
_model_server_result.datetime_utc      '2024-11-15 06:53:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qa6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1104}' 
#
_entry.id    6QA6 
#
_exptl.entry_id    6QA6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QA6 
_cell.length_a            128.161 
_cell.length_b            128.161 
_cell.length_c            115.794 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QA6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 115.794 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             681 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              680 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PLP 
_struct_conn.ptnr2_auth_seq_id              1104 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.411 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     6QA6 
_atom_sites.fract_transf_matrix[1][1]    0.007803 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007803 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 1101 1101 DMS DMS . 
C 3 HT8 A 1 1102 901 HT8 30 . 
D 3 HT8 A 1 1103 902 HT8 30 . 
E 4 PLP A 1 1104 920 PLP PLP . 
F 5 HOH A 1 1201 350 HOH HOH . 
F 5 HOH A 2 1202 331 HOH HOH . 
F 5 HOH A 3 1203 235 HOH HOH . 
F 5 HOH A 4 1204 229 HOH HOH . 
F 5 HOH A 5 1205 209 HOH HOH . 
F 5 HOH A 6 1206 205 HOH HOH . 
F 5 HOH A 7 1207 153 HOH HOH . 
F 5 HOH A 8 1208 19 HOH HOH . 
F 5 HOH A 9 1209 158 HOH HOH . 
F 5 HOH A 10 1210 96 HOH HOH . 
F 5 HOH A 11 1211 87 HOH HOH . 
F 5 HOH A 12 1212 342 HOH HOH . 
F 5 HOH A 13 1213 258 HOH HOH . 
F 5 HOH A 14 1214 46 HOH HOH . 
F 5 HOH A 15 1215 35 HOH HOH . 
F 5 HOH A 16 1216 137 HOH HOH . 
F 5 HOH A 17 1217 13 HOH HOH . 
F 5 HOH A 18 1218 85 HOH HOH . 
F 5 HOH A 19 1219 173 HOH HOH . 
F 5 HOH A 20 1220 4 HOH HOH . 
F 5 HOH A 21 1221 110 HOH HOH . 
F 5 HOH A 22 1222 271 HOH HOH . 
F 5 HOH A 23 1223 130 HOH HOH . 
F 5 HOH A 24 1224 206 HOH HOH . 
F 5 HOH A 25 1225 80 HOH HOH . 
F 5 HOH A 26 1226 140 HOH HOH . 
F 5 HOH A 27 1227 346 HOH HOH . 
F 5 HOH A 28 1228 336 HOH HOH . 
F 5 HOH A 29 1229 94 HOH HOH . 
F 5 HOH A 30 1230 122 HOH HOH . 
F 5 HOH A 31 1231 65 HOH HOH . 
F 5 HOH A 32 1232 119 HOH HOH . 
F 5 HOH A 33 1233 132 HOH HOH . 
F 5 HOH A 34 1234 11 HOH HOH . 
F 5 HOH A 35 1235 233 HOH HOH . 
F 5 HOH A 36 1236 168 HOH HOH . 
F 5 HOH A 37 1237 311 HOH HOH . 
F 5 HOH A 38 1238 340 HOH HOH . 
F 5 HOH A 39 1239 90 HOH HOH . 
F 5 HOH A 40 1240 59 HOH HOH . 
F 5 HOH A 41 1241 216 HOH HOH . 
F 5 HOH A 42 1242 208 HOH HOH . 
F 5 HOH A 43 1243 214 HOH HOH . 
F 5 HOH A 44 1244 37 HOH HOH . 
F 5 HOH A 45 1245 67 HOH HOH . 
F 5 HOH A 46 1246 16 HOH HOH . 
F 5 HOH A 47 1247 188 HOH HOH . 
F 5 HOH A 48 1248 79 HOH HOH . 
F 5 HOH A 49 1249 166 HOH HOH . 
F 5 HOH A 50 1250 82 HOH HOH . 
F 5 HOH A 51 1251 129 HOH HOH . 
F 5 HOH A 52 1252 200 HOH HOH . 
F 5 HOH A 53 1253 133 HOH HOH . 
F 5 HOH A 54 1254 75 HOH HOH . 
F 5 HOH A 55 1255 148 HOH HOH . 
F 5 HOH A 56 1256 164 HOH HOH . 
F 5 HOH A 57 1257 21 HOH HOH . 
F 5 HOH A 58 1258 360 HOH HOH . 
F 5 HOH A 59 1259 81 HOH HOH . 
F 5 HOH A 60 1260 262 HOH HOH . 
F 5 HOH A 61 1261 84 HOH HOH . 
F 5 HOH A 62 1262 120 HOH HOH . 
F 5 HOH A 63 1263 134 HOH HOH . 
F 5 HOH A 64 1264 92 HOH HOH . 
F 5 HOH A 65 1265 45 HOH HOH . 
F 5 HOH A 66 1266 283 HOH HOH . 
F 5 HOH A 67 1267 139 HOH HOH . 
F 5 HOH A 68 1268 17 HOH HOH . 
F 5 HOH A 69 1269 107 HOH HOH . 
F 5 HOH A 70 1270 50 HOH HOH . 
F 5 HOH A 71 1271 330 HOH HOH . 
F 5 HOH A 72 1272 159 HOH HOH . 
F 5 HOH A 73 1273 22 HOH HOH . 
F 5 HOH A 74 1274 143 HOH HOH . 
F 5 HOH A 75 1275 68 HOH HOH . 
F 5 HOH A 76 1276 225 HOH HOH . 
F 5 HOH A 77 1277 165 HOH HOH . 
F 5 HOH A 78 1278 8 HOH HOH . 
F 5 HOH A 79 1279 53 HOH HOH . 
F 5 HOH A 80 1280 31 HOH HOH . 
F 5 HOH A 81 1281 332 HOH HOH . 
F 5 HOH A 82 1282 280 HOH HOH . 
F 5 HOH A 83 1283 98 HOH HOH . 
F 5 HOH A 84 1284 347 HOH HOH . 
F 5 HOH A 85 1285 34 HOH HOH . 
F 5 HOH A 86 1286 142 HOH HOH . 
F 5 HOH A 87 1287 117 HOH HOH . 
F 5 HOH A 88 1288 30 HOH HOH . 
F 5 HOH A 89 1289 204 HOH HOH . 
F 5 HOH A 90 1290 335 HOH HOH . 
F 5 HOH A 91 1291 240 HOH HOH . 
F 5 HOH A 92 1292 89 HOH HOH . 
F 5 HOH A 93 1293 141 HOH HOH . 
F 5 HOH A 94 1294 38 HOH HOH . 
F 5 HOH A 95 1295 212 HOH HOH . 
F 5 HOH A 96 1296 226 HOH HOH . 
F 5 HOH A 97 1297 58 HOH HOH . 
F 5 HOH A 98 1298 322 HOH HOH . 
F 5 HOH A 99 1299 56 HOH HOH . 
F 5 HOH A 100 1300 7 HOH HOH . 
F 5 HOH A 101 1301 33 HOH HOH . 
F 5 HOH A 102 1302 9 HOH HOH . 
F 5 HOH A 103 1303 343 HOH HOH . 
F 5 HOH A 104 1304 48 HOH HOH . 
F 5 HOH A 105 1305 147 HOH HOH . 
F 5 HOH A 106 1306 327 HOH HOH . 
F 5 HOH A 107 1307 10 HOH HOH . 
F 5 HOH A 108 1308 135 HOH HOH . 
F 5 HOH A 109 1309 41 HOH HOH . 
F 5 HOH A 110 1310 118 HOH HOH . 
F 5 HOH A 111 1311 108 HOH HOH . 
F 5 HOH A 112 1312 3 HOH HOH . 
F 5 HOH A 113 1313 218 HOH HOH . 
F 5 HOH A 114 1314 64 HOH HOH . 
F 5 HOH A 115 1315 95 HOH HOH . 
F 5 HOH A 116 1316 55 HOH HOH . 
F 5 HOH A 117 1317 160 HOH HOH . 
F 5 HOH A 118 1318 29 HOH HOH . 
F 5 HOH A 119 1319 83 HOH HOH . 
F 5 HOH A 120 1320 178 HOH HOH . 
F 5 HOH A 121 1321 97 HOH HOH . 
F 5 HOH A 122 1322 196 HOH HOH . 
F 5 HOH A 123 1323 24 HOH HOH . 
F 5 HOH A 124 1324 52 HOH HOH . 
F 5 HOH A 125 1325 359 HOH HOH . 
F 5 HOH A 126 1326 78 HOH HOH . 
F 5 HOH A 127 1327 152 HOH HOH . 
F 5 HOH A 128 1328 74 HOH HOH . 
F 5 HOH A 129 1329 248 HOH HOH . 
F 5 HOH A 130 1330 109 HOH HOH . 
F 5 HOH A 131 1331 263 HOH HOH . 
F 5 HOH A 132 1332 18 HOH HOH . 
F 5 HOH A 133 1333 219 HOH HOH . 
F 5 HOH A 134 1334 328 HOH HOH . 
F 5 HOH A 135 1335 154 HOH HOH . 
F 5 HOH A 136 1336 203 HOH HOH . 
F 5 HOH A 137 1337 202 HOH HOH . 
F 5 HOH A 138 1338 73 HOH HOH . 
F 5 HOH A 139 1339 156 HOH HOH . 
F 5 HOH A 140 1340 91 HOH HOH . 
F 5 HOH A 141 1341 123 HOH HOH . 
F 5 HOH A 142 1342 163 HOH HOH . 
F 5 HOH A 143 1343 210 HOH HOH . 
F 5 HOH A 144 1344 146 HOH HOH . 
F 5 HOH A 145 1345 321 HOH HOH . 
F 5 HOH A 146 1346 23 HOH HOH . 
F 5 HOH A 147 1347 355 HOH HOH . 
F 5 HOH A 148 1348 5 HOH HOH . 
F 5 HOH A 149 1349 51 HOH HOH . 
F 5 HOH A 150 1350 54 HOH HOH . 
F 5 HOH A 151 1351 334 HOH HOH . 
F 5 HOH A 152 1352 126 HOH HOH . 
F 5 HOH A 153 1353 187 HOH HOH . 
F 5 HOH A 154 1354 181 HOH HOH . 
F 5 HOH A 155 1355 176 HOH HOH . 
F 5 HOH A 156 1356 194 HOH HOH . 
F 5 HOH A 157 1357 111 HOH HOH . 
F 5 HOH A 158 1358 49 HOH HOH . 
F 5 HOH A 159 1359 223 HOH HOH . 
F 5 HOH A 160 1360 93 HOH HOH . 
F 5 HOH A 161 1361 162 HOH HOH . 
F 5 HOH A 162 1362 116 HOH HOH . 
F 5 HOH A 163 1363 255 HOH HOH . 
F 5 HOH A 164 1364 167 HOH HOH . 
F 5 HOH A 165 1365 57 HOH HOH . 
F 5 HOH A 166 1366 329 HOH HOH . 
F 5 HOH A 167 1367 40 HOH HOH . 
F 5 HOH A 168 1368 184 HOH HOH . 
F 5 HOH A 169 1369 86 HOH HOH . 
F 5 HOH A 170 1370 113 HOH HOH . 
F 5 HOH A 171 1371 14 HOH HOH . 
F 5 HOH A 172 1372 15 HOH HOH . 
F 5 HOH A 173 1373 77 HOH HOH . 
F 5 HOH A 174 1374 254 HOH HOH . 
F 5 HOH A 175 1375 191 HOH HOH . 
F 5 HOH A 176 1376 36 HOH HOH . 
F 5 HOH A 177 1377 112 HOH HOH . 
F 5 HOH A 178 1378 207 HOH HOH . 
F 5 HOH A 179 1379 217 HOH HOH . 
F 5 HOH A 180 1380 272 HOH HOH . 
F 5 HOH A 181 1381 131 HOH HOH . 
F 5 HOH A 182 1382 232 HOH HOH . 
F 5 HOH A 183 1383 352 HOH HOH . 
F 5 HOH A 184 1384 220 HOH HOH . 
F 5 HOH A 185 1385 193 HOH HOH . 
F 5 HOH A 186 1386 253 HOH HOH . 
F 5 HOH A 187 1387 39 HOH HOH . 
F 5 HOH A 188 1388 354 HOH HOH . 
F 5 HOH A 189 1389 269 HOH HOH . 
F 5 HOH A 190 1390 70 HOH HOH . 
F 5 HOH A 191 1391 189 HOH HOH . 
F 5 HOH A 192 1392 190 HOH HOH . 
F 5 HOH A 193 1393 66 HOH HOH . 
F 5 HOH A 194 1394 138 HOH HOH . 
F 5 HOH A 195 1395 252 HOH HOH . 
F 5 HOH A 196 1396 12 HOH HOH . 
F 5 HOH A 197 1397 284 HOH HOH . 
F 5 HOH A 198 1398 351 HOH HOH . 
F 5 HOH A 199 1399 6 HOH HOH . 
F 5 HOH A 200 1400 25 HOH HOH . 
F 5 HOH A 201 1401 199 HOH HOH . 
F 5 HOH A 202 1402 72 HOH HOH . 
F 5 HOH A 203 1403 169 HOH HOH . 
F 5 HOH A 204 1404 44 HOH HOH . 
F 5 HOH A 205 1405 121 HOH HOH . 
F 5 HOH A 206 1406 43 HOH HOH . 
F 5 HOH A 207 1407 20 HOH HOH . 
F 5 HOH A 208 1408 127 HOH HOH . 
F 5 HOH A 209 1409 295 HOH HOH . 
F 5 HOH A 210 1410 151 HOH HOH . 
F 5 HOH A 211 1411 32 HOH HOH . 
F 5 HOH A 212 1412 198 HOH HOH . 
F 5 HOH A 213 1413 171 HOH HOH . 
F 5 HOH A 214 1414 242 HOH HOH . 
F 5 HOH A 215 1415 247 HOH HOH . 
F 5 HOH A 216 1416 333 HOH HOH . 
F 5 HOH A 217 1417 150 HOH HOH . 
F 5 HOH A 218 1418 88 HOH HOH . 
F 5 HOH A 219 1419 124 HOH HOH . 
F 5 HOH A 220 1420 246 HOH HOH . 
F 5 HOH A 221 1421 356 HOH HOH . 
F 5 HOH A 222 1422 186 HOH HOH . 
F 5 HOH A 223 1423 324 HOH HOH . 
F 5 HOH A 224 1424 358 HOH HOH . 
F 5 HOH A 225 1425 265 HOH HOH . 
F 5 HOH A 226 1426 361 HOH HOH . 
F 5 HOH A 227 1427 345 HOH HOH . 
F 5 HOH A 228 1428 357 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 4 24.58 25.599 30.131 1 16.28 ? N1 PLP 1104 A 1 
HETATM 2 C C2 PLP . . . E 4 23.486 24.884 30.414 1 14.61 ? C2 PLP 1104 A 1 
HETATM 3 C C2A PLP . . . E 4 22.516 25.343 31.441 1 14.32 ? C2A PLP 1104 A 1 
HETATM 4 C C3 PLP . . . E 4 23.206 23.65 29.708 1 15.34 ? C3 PLP 1104 A 1 
HETATM 5 O O3 PLP . . . E 4 22.083 22.943 30.014 1 16.81 ? O3 PLP 1104 A 1 
HETATM 6 C C4 PLP . . . E 4 24.157 23.242 28.689 1 15.22 ? C4 PLP 1104 A 1 
HETATM 7 C C4A PLP . . . E 4 23.996 21.964 27.885 1 15.77 ? C4A PLP 1104 A 1 
HETATM 8 C C5 PLP . . . E 4 25.316 24.107 28.47 1 14.83 ? C5 PLP 1104 A 1 
HETATM 9 C C6 PLP . . . E 4 25.476 25.263 29.209 1 15.64 ? C6 PLP 1104 A 1 
HETATM 10 C C5A PLP . . . E 4 26.361 23.803 27.405 1 14.88 ? C5A PLP 1104 A 1 
HETATM 11 O O4P PLP . . . E 4 25.855 24.403 26.218 1 15.09 ? O4P PLP 1104 A 1 
HETATM 12 P P PLP . . . E 4 26.839 24.795 24.984 1 16.43 ? P PLP 1104 A 1 
HETATM 13 O O1P PLP . . . E 4 25.875 25.407 24.036 1 16.92 ? O1P PLP 1104 A 1 
HETATM 14 O O2P PLP . . . E 4 27.807 25.858 25.54 1 15.25 ? O2P PLP 1104 A 1 
HETATM 15 O O3P PLP . . . E 4 27.509 23.51 24.535 1 14.59 ? O3P PLP 1104 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#