data_6QA9
#
_model_server_result.job_id            iiWRC8-UdibWce-w5bsINg 
_model_server_result.datetime_utc      '2024-11-23 00:27:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qa9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":501}' 
#
_entry.id    6QA9 
#
_exptl.entry_id    6QA9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          46 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QA9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QA9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    45-meric 
_pdbx_struct_assembly.oligomeric_count      45 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      46 
_struct_asym.id                             UA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 I SG CYS 59 S6 CYS 59 1_555 I SG CYS 87 S6 CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
disulf ? disulf2 Y SG CYS 17 AK CYS 17 1_555 Y SG CYS 74 AK CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 Y SG CYS 94 AK CYS 94 1_555 Y SG CYS 114 AK CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 BA SG CYS 35 A8 CYS 35 1_555 BA SG CYS 65 A8 CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 BA SG CYS 45 A8 CYS 45 1_555 BA SG CYS 55 A8 CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 BA SG CYS 77 A8 CYS 77 1_555 BA SG CYS 109 A8 CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 BA SG CYS 87 A8 CYS 87 1_555 BA SG CYS 99 A8 CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 CA SG CYS 76 BJ CYS 76 1_555 CA SG CYS 83 BJ CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 CA SG CYS 112 BJ CYS 112 1_555 CA SG CYS 124 BJ CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 EA SG CYS 32 S5 CYS 32 1_555 EA SG CYS 65 S5 CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf11 EA SG CYS 42 S5 CYS 42 1_555 EA SG CYS 55 S5 CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 LA SG CYS 58 B7 CYS 58 1_555 LA SG CYS 89 B7 CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 LA SG CYS 68 B7 CYS 68 1_555 LA SG CYS 79 B7 CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 Q OG SER 44 AA SER 44 1_555 EB P1 ZMP . AA ZMP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? 
covale ? covale2 AA OG SER 44 AB SER 44 1_555 LB P1 ZMP . B9 ZMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? 
metalc ? metalc1 A SG CYS 363 V1 CYS 362 1_555 TA FE3 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc2 A SG CYS 366 V1 CYS 365 1_555 TA FE1 SF4 . V1 SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc3 B SG CYS 148 V2 CYS 148 1_555 VA FE2 FES . V2 FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 C SG CYS 41 S1 CYS 41 1_555 YA FE1 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc5 C SG CYS 52 S1 CYS 52 1_555 YA FE1 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc6 C SG CYS 55 S1 CYS 55 1_555 YA FE2 FES . S1 FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc7 C NE2 HIS 101 S1 HIS 101 1_555 WA FE3 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc8 C SG CYS 108 S1 CYS 108 1_555 WA FE4 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc9 C SG CYS 114 S1 CYS 114 1_555 WA FE1 SF4 . S1 SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc10 C SG CYS 153 S1 CYS 153 1_555 XA FE2 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc11 C SG CYS 156 S1 CYS 156 1_555 XA FE1 SF4 . S1 SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc12 F SG CYS 54 S7 CYS 54 1_555 ZA FE4 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc13 F SG CYS 55 S7 CYS 55 1_555 ZA FE3 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc14 F SG CYS 119 S7 CYS 119 1_555 ZA FE1 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc15 F SG CYS 149 S7 CYS 149 1_555 ZA FE2 SF4 . S7 SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc16 G SG CYS 83 S8 CYS 83 1_555 BB FE2 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc17 G SG CYS 87 S8 CYS 87 1_555 AB FE4 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc18 G SG CYS 122 S8 CYS 122 1_555 AB FE3 SF4 . S8 SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc19 G SG CYS 126 S8 CYS 126 1_555 BB FE1 SF4 . S8 SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc20 I SG CYS 59 S6 CYS 59 1_555 CB ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc21 I NE2 HIS 68 S6 HIS 68 1_555 CB ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc22 I SG CYS 84 S6 CYS 84 1_555 CB ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc23 I SG CYS 87 S6 CYS 87 1_555 CB ZN ZN . S6 ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 474 n n 
N1 C10 FMN doub 475 n n 
C2 O2 FMN doub 476 n n 
C2 N3 FMN sing 477 n n 
N3 C4 FMN sing 478 n n 
N3 HN3 FMN sing 479 n n 
C4 O4 FMN doub 480 n n 
C4 C4A FMN sing 481 n n 
C4A N5 FMN doub 482 n n 
C4A C10 FMN sing 483 n n 
N5 C5A FMN sing 484 n n 
C5A C6 FMN doub 485 n y 
C5A C9A FMN sing 486 n y 
C6 C7 FMN sing 487 n y 
C6 H6 FMN sing 488 n n 
C7 C7M FMN sing 489 n n 
C7 C8 FMN doub 490 n y 
C7M HM71 FMN sing 491 n n 
C7M HM72 FMN sing 492 n n 
C7M HM73 FMN sing 493 n n 
C8 C8M FMN sing 494 n n 
C8 C9 FMN sing 495 n y 
C8M HM81 FMN sing 496 n n 
C8M HM82 FMN sing 497 n n 
C8M HM83 FMN sing 498 n n 
C9 C9A FMN doub 499 n y 
C9 H9 FMN sing 500 n n 
C9A N10 FMN sing 501 n n 
N10 C10 FMN sing 502 n n 
N10 C1' FMN sing 503 n n 
C1' C2' FMN sing 504 n n 
C1' "H1'1" FMN sing 505 n n 
C1' "H1'2" FMN sing 506 n n 
C2' O2' FMN sing 507 n n 
C2' C3' FMN sing 508 n n 
C2' H2' FMN sing 509 n n 
O2' HO2' FMN sing 510 n n 
C3' O3' FMN sing 511 n n 
C3' C4' FMN sing 512 n n 
C3' H3' FMN sing 513 n n 
O3' HO3' FMN sing 514 n n 
C4' O4' FMN sing 515 n n 
C4' C5' FMN sing 516 n n 
C4' H4' FMN sing 517 n n 
O4' HO4' FMN sing 518 n n 
C5' O5' FMN sing 519 n n 
C5' "H5'1" FMN sing 520 n n 
C5' "H5'2" FMN sing 521 n n 
O5' P FMN sing 522 n n 
P O1P FMN doub 523 n n 
P O2P FMN sing 524 n n 
P O3P FMN sing 525 n n 
O2P HOP2 FMN sing 526 n n 
O3P HOP3 FMN sing 527 n n 
#
_atom_sites.entry_id                     6QA9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
TA 45 SF4 V1 1 500 500 SF4 SF4 . 
UA 46 FMN V1 1 501 501 FMN FMN . 
VA 47 FES V2 1 300 300 FES FES . 
WA 45 SF4 S1 1 801 801 SF4 SF4 . 
XA 45 SF4 S1 1 802 802 SF4 SF4 . 
YA 47 FES S1 1 803 803 FES FES . 
ZA 45 SF4 S7 1 300 300 SF4 SF4 . 
AB 45 SF4 S8 1 201 502 SF4 SF4 . 
BB 45 SF4 S8 1 202 503 SF4 SF4 . 
CB 48 ZN S6 1 300 300 ZN ZN . 
DB 49 NDP A9 1 401 401 NDP NDP . 
EB 50 ZMP AA 1 101 101 ZMP ZMP . 
FB 51 3PE D1 1 501 501 3PE 3PE . 
GB 52 CDL D5 1 901 901 CDL CDL . 
HB 51 3PE D5 1 902 902 3PE 3PE . 
IB 51 3PE D4 1 501 702 3PE 3PE . 
JB 53 PC1 D4 1 502 503 PC1 PC1 . 
KB 51 3PE A8 1 301 301 3PE 3PE . 
LB 50 ZMP B9 1 201 101 ZMP ZMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . UA 46 266.985 430.837 358.544 1 140.18 ? N1 FMN 501 V1 1 
HETATM 2 C C2 FMN . . . UA 46 265.757 431.38 358.4 1 140.18 ? C2 FMN 501 V1 1 
HETATM 3 O O2 FMN . . . UA 46 265.596 432.601 358.361 1 140.18 ? O2 FMN 501 V1 1 
HETATM 4 N N3 FMN . . . UA 46 264.656 430.564 358.276 1 140.18 ? N3 FMN 501 V1 1 
HETATM 5 C C4 FMN . . . UA 46 264.666 429.185 358.279 1 140.18 ? C4 FMN 501 V1 1 
HETATM 6 O O4 FMN . . . UA 46 263.617 428.558 358.15 1 140.18 ? O4 FMN 501 V1 1 
HETATM 7 C C4A FMN . . . UA 46 265.969 428.617 358.429 1 140.18 ? C4A FMN 501 V1 1 
HETATM 8 N N5 FMN . . . UA 46 266.077 427.323 358.425 1 140.18 ? N5 FMN 501 V1 1 
HETATM 9 C C5A FMN . . . UA 46 267.341 426.778 358.558 1 140.18 ? C5A FMN 501 V1 1 
HETATM 10 C C6 FMN . . . UA 46 267.473 425.393 358.55 1 140.18 ? C6 FMN 501 V1 1 
HETATM 11 C C7 FMN . . . UA 46 268.72 424.793 358.68 1 140.18 ? C7 FMN 501 V1 1 
HETATM 12 C C7M FMN . . . UA 46 268.819 423.291 358.69 1 140.18 ? C7M FMN 501 V1 1 
HETATM 13 C C8 FMN . . . UA 46 269.864 425.596 358.813 1 140.18 ? C8 FMN 501 V1 1 
HETATM 14 C C8M FMN . . . UA 46 271.233 424.985 358.948 1 140.18 ? C8M FMN 501 V1 1 
HETATM 15 C C9 FMN . . . UA 46 269.732 426.98 358.821 1 140.18 ? C9 FMN 501 V1 1 
HETATM 16 C C9A FMN . . . UA 46 268.484 427.573 358.692 1 140.18 ? C9A FMN 501 V1 1 
HETATM 17 N N10 FMN . . . UA 46 268.323 428.967 358.673 1 140.18 ? N10 FMN 501 V1 1 
HETATM 18 C C10 FMN . . . UA 46 267.077 429.525 358.555 1 140.18 ? C10 FMN 501 V1 1 
HETATM 19 C C1' FMN . . . UA 46 269.514 429.823 358.666 1 140.18 ? C1' FMN 501 V1 1 
HETATM 20 C C2' FMN . . . UA 46 269.914 430.34 360.044 1 140.18 ? C2' FMN 501 V1 1 
HETATM 21 O O2' FMN . . . UA 46 268.787 430.405 360.918 1 140.18 ? O2' FMN 501 V1 1 
HETATM 22 C C3' FMN . . . UA 46 270.56 431.722 359.943 1 140.18 ? C3' FMN 501 V1 1 
HETATM 23 O O3' FMN . . . UA 46 271.459 431.884 361.034 1 140.18 ? O3' FMN 501 V1 1 
HETATM 24 C C4' FMN . . . UA 46 269.559 432.879 359.972 1 140.18 ? C4' FMN 501 V1 1 
HETATM 25 O O4' FMN . . . UA 46 268.798 432.937 358.766 1 140.18 ? O4' FMN 501 V1 1 
HETATM 26 C C5' FMN . . . UA 46 270.242 434.21 360.19 1 140.18 ? C5' FMN 501 V1 1 
HETATM 27 O O5' FMN . . . UA 46 270.945 434.165 361.443 1 140.18 ? O5' FMN 501 V1 1 
HETATM 28 P P FMN . . . UA 46 270.287 434.69 362.779 1 140.18 ? P FMN 501 V1 1 
HETATM 29 O O1P FMN . . . UA 46 270.264 433.62 363.789 1 140.18 ? O1P FMN 501 V1 1 
HETATM 30 O O2P FMN . . . UA 46 271.112 435.888 363.21 1 140.18 ? O2P FMN 501 V1 1 
HETATM 31 O O3P FMN . . . UA 46 268.887 435.176 362.409 1 140.18 ? O3P FMN 501 V1 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           107 
_model_server_stats.create_model_time_ms    166 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#