data_6QAB
#
_model_server_result.job_id            0A0n-5Q4spzqWhhtdPTXgA 
_model_server_result.datetime_utc      '2024-10-11 00:27:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qab 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":612}' 
#
_entry.id    6QAB 
#
_exptl.entry_id    6QAB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QAB 
_cell.length_a            153.632 
_cell.length_b            153.632 
_cell.length_c            128.589 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QAB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 600 NAG 
2 n B FUC 2 B 2 FUC A 609 FUC 
3 n C NAG 1 C 1 NAG A 605 NAG 
3 n C NAG 2 C 2 NAG A 602 NAG 
3 n C FUC 3 C 3 FUC A 610 FUC 
3 n D NAG 1 D 1 NAG A 603 NAG 
3 n D NAG 2 D 2 NAG A 607 NAG 
3 n D FUC 3 D 3 FUC A 608 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 93 A CYS 65 1_555 A SG CYS 120 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 280 A CYS 252 1_555 A SG CYS 291 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 428 A CYS 400 1_555 A SG CYS 547 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
covale ? covale1 A ND2 ASN 85 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 134 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 269 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale4 A ND2 ASN 284 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 A ND2 ASN 369 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 A ND2 ASN 513 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     6QAB 
_atom_sites.fract_transf_matrix[1][1]    0.006509 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007777 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NAG A 1 603 601 NAG NAG . 
F 4 NAG A 1 610 604 NAG NAG . 
G 4 NAG A 1 611 606 NAG NAG . 
H 5 DMS A 1 612 701 DMS DMS . 
I 6 GOL A 1 613 901 GOL GOL . 
J 6 GOL A 1 614 1001 GOL GOL . 
K 6 GOL A 1 615 1101 GOL GOL . 
L 6 GOL A 1 616 1401 GOL GOL . 
M 7 MES A 1 617 1601 MES MES . 
N 8 HUQ A 1 618 1701 HUQ 266 . 
O 9 SO4 A 1 619 1 SO4 SO4 . 
P 9 SO4 A 1 620 3 SO4 SO4 . 
Q 9 SO4 A 1 621 4 SO4 SO4 . 
R 9 SO4 A 1 622 5 SO4 SO4 . 
S 10 HOH A 1 701 54 HOH HOH . 
S 10 HOH A 2 702 133 HOH HOH . 
S 10 HOH A 3 703 80 HOH HOH . 
S 10 HOH A 4 704 250 HOH HOH . 
S 10 HOH A 5 705 69 HOH HOH . 
S 10 HOH A 6 706 3 HOH HOH . 
S 10 HOH A 7 707 17 HOH HOH . 
S 10 HOH A 8 708 34 HOH HOH . 
S 10 HOH A 9 709 38 HOH HOH . 
S 10 HOH A 10 710 28 HOH HOH . 
S 10 HOH A 11 711 50 HOH HOH . 
S 10 HOH A 12 712 186 HOH HOH . 
S 10 HOH A 13 713 14 HOH HOH . 
S 10 HOH A 14 714 30 HOH HOH . 
S 10 HOH A 15 715 12 HOH HOH . 
S 10 HOH A 16 716 11 HOH HOH . 
S 10 HOH A 17 717 99 HOH HOH . 
S 10 HOH A 18 718 15 HOH HOH . 
S 10 HOH A 19 719 7 HOH HOH . 
S 10 HOH A 20 720 82 HOH HOH . 
S 10 HOH A 21 721 36 HOH HOH . 
S 10 HOH A 22 722 35 HOH HOH . 
S 10 HOH A 23 723 16 HOH HOH . 
S 10 HOH A 24 724 222 HOH HOH . 
S 10 HOH A 25 725 18 HOH HOH . 
S 10 HOH A 26 726 37 HOH HOH . 
S 10 HOH A 27 727 200 HOH HOH . 
S 10 HOH A 28 728 29 HOH HOH . 
S 10 HOH A 29 729 4 HOH HOH . 
S 10 HOH A 30 730 105 HOH HOH . 
S 10 HOH A 31 731 129 HOH HOH . 
S 10 HOH A 32 732 110 HOH HOH . 
S 10 HOH A 33 733 5 HOH HOH . 
S 10 HOH A 34 734 209 HOH HOH . 
S 10 HOH A 35 735 8 HOH HOH . 
S 10 HOH A 36 736 185 HOH HOH . 
S 10 HOH A 37 737 31 HOH HOH . 
S 10 HOH A 38 738 277 HOH HOH . 
S 10 HOH A 39 739 2 HOH HOH . 
S 10 HOH A 40 740 47 HOH HOH . 
S 10 HOH A 41 741 236 HOH HOH . 
S 10 HOH A 42 742 120 HOH HOH . 
S 10 HOH A 43 743 190 HOH HOH . 
S 10 HOH A 44 744 6 HOH HOH . 
S 10 HOH A 45 745 58 HOH HOH . 
S 10 HOH A 46 746 22 HOH HOH . 
S 10 HOH A 47 747 44 HOH HOH . 
S 10 HOH A 48 748 39 HOH HOH . 
S 10 HOH A 49 749 20 HOH HOH . 
S 10 HOH A 50 750 79 HOH HOH . 
S 10 HOH A 51 751 1 HOH HOH . 
S 10 HOH A 52 752 66 HOH HOH . 
S 10 HOH A 53 753 51 HOH HOH . 
S 10 HOH A 54 754 40 HOH HOH . 
S 10 HOH A 55 755 60 HOH HOH . 
S 10 HOH A 56 756 71 HOH HOH . 
S 10 HOH A 57 757 276 HOH HOH . 
S 10 HOH A 58 758 26 HOH HOH . 
S 10 HOH A 59 759 103 HOH HOH . 
S 10 HOH A 60 760 21 HOH HOH . 
S 10 HOH A 61 761 126 HOH HOH . 
S 10 HOH A 62 762 59 HOH HOH . 
S 10 HOH A 63 763 88 HOH HOH . 
S 10 HOH A 64 764 259 HOH HOH . 
S 10 HOH A 65 765 90 HOH HOH . 
S 10 HOH A 66 766 125 HOH HOH . 
S 10 HOH A 67 767 128 HOH HOH . 
S 10 HOH A 68 768 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . H 5 37.561 20.946 88.723 1 65.75 ? S DMS 612 A 1 
HETATM 2 O O DMS . . . H 5 37.869 19.536 88.275 1 67.5 ? O DMS 612 A 1 
HETATM 3 C C1 DMS . . . H 5 36.661 21.821 87.42 1 54.05 ? C1 DMS 612 A 1 
HETATM 4 C C2 DMS . . . H 5 36.232 20.857 89.964 1 58.2 ? C2 DMS 612 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#