data_6QAB # _model_server_result.job_id rR_wVn-Tvuigm97ysUSzRA _model_server_result.datetime_utc '2025-06-20 19:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":618}' # _entry.id 6QAB # _exptl.entry_id 6QAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.631 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description butyl-[(2~{S})-1-(2-cycloheptylethylamino)-3-(1~{H}-indol-3-yl)-1-oxidanylidene-propan-2-yl]-dimethyl-azanium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QAB _cell.length_a 153.632 _cell.length_b 153.632 _cell.length_c 128.589 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 3 n D NAG 1 D 1 NAG A 603 NAG 3 n D NAG 2 D 2 NAG A 607 NAG 3 n D FUC 3 D 3 FUC A 608 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 65 1_555 A SG CYS 120 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 280 A CYS 252 1_555 A SG CYS 291 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 428 A CYS 400 1_555 A SG CYS 547 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A ND2 ASN 85 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 134 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 269 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 A ND2 ASN 284 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 A ND2 ASN 369 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 A ND2 ASN 513 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C26 H42 N3 O 1' _chem_comp.formula_weight 412.631 _chem_comp.id HUQ _chem_comp.mon_nstd_flag . _chem_comp.name butyl-[(2~{S})-1-(2-cycloheptylethylamino)-3-(1~{H}-indol-3-yl)-1-oxidanylidene-propan-2-yl]-dimethyl-azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 HUQ sing 197 n n C17 C18 HUQ sing 198 n n C19 C18 HUQ sing 199 n n C19 C13 HUQ sing 200 n n C15 C16 HUQ sing 201 n n C15 C14 HUQ sing 202 n n C12 C11 HUQ sing 203 n n C12 C13 HUQ sing 204 n n C01 C02 HUQ sing 205 n n C29 C28 HUQ doub 206 n y C29 C30 HUQ sing 207 n y C11 N10 HUQ sing 208 n n C13 C14 HUQ sing 209 n n C28 C27 HUQ sing 210 n y C30 C25 HUQ doub 211 n y N10 C09 HUQ sing 212 n n C02 C03 HUQ sing 213 n n C27 C26 HUQ doub 214 n y C25 C26 HUQ sing 215 n y C25 N24 HUQ sing 216 n y C03 C04 HUQ sing 217 n n C26 C22 HUQ sing 218 n y C09 C08 HUQ sing 219 n n C09 O20 HUQ doub 220 n n N24 C23 HUQ sing 221 n y C04 N05 HUQ sing 222 n n C08 N05 HUQ sing 223 n n C08 C21 HUQ sing 224 n n C22 C23 HUQ doub 225 n y C22 C21 HUQ sing 226 n n C06 N05 HUQ sing 227 n n N05 C07 HUQ sing 228 n n C01 H1 HUQ sing 229 n n C01 H2 HUQ sing 230 n n C01 H3 HUQ sing 231 n n C02 H4 HUQ sing 232 n n C02 H5 HUQ sing 233 n n C03 H6 HUQ sing 234 n n C03 H7 HUQ sing 235 n n C04 H8 HUQ sing 236 n n C04 H9 HUQ sing 237 n n C06 H10 HUQ sing 238 n n C06 H11 HUQ sing 239 n n C06 H12 HUQ sing 240 n n C07 H13 HUQ sing 241 n n C07 H14 HUQ sing 242 n n C07 H15 HUQ sing 243 n n C08 H16 HUQ sing 244 n n C11 H17 HUQ sing 245 n n C11 H18 HUQ sing 246 n n C12 H19 HUQ sing 247 n n C12 H20 HUQ sing 248 n n C13 H21 HUQ sing 249 n n C14 H22 HUQ sing 250 n n C14 H23 HUQ sing 251 n n C15 H24 HUQ sing 252 n n C15 H25 HUQ sing 253 n n C16 H26 HUQ sing 254 n n C16 H27 HUQ sing 255 n n C17 H28 HUQ sing 256 n n C17 H29 HUQ sing 257 n n C18 H30 HUQ sing 258 n n C18 H31 HUQ sing 259 n n C19 H32 HUQ sing 260 n n C19 H33 HUQ sing 261 n n C21 H34 HUQ sing 262 n n C21 H35 HUQ sing 263 n n C23 H36 HUQ sing 264 n n C27 H37 HUQ sing 265 n n C28 H38 HUQ sing 266 n n C29 H39 HUQ sing 267 n n C30 H40 HUQ sing 268 n n N10 H41 HUQ sing 269 n n N24 H42 HUQ sing 270 n n # _atom_sites.entry_id 6QAB _atom_sites.fract_transf_matrix[1][1] 0.006509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 603 601 NAG NAG . F 4 NAG A 1 610 604 NAG NAG . G 4 NAG A 1 611 606 NAG NAG . H 5 DMS A 1 612 701 DMS DMS . I 6 GOL A 1 613 901 GOL GOL . J 6 GOL A 1 614 1001 GOL GOL . K 6 GOL A 1 615 1101 GOL GOL . L 6 GOL A 1 616 1401 GOL GOL . M 7 MES A 1 617 1601 MES MES . N 8 HUQ A 1 618 1701 HUQ 266 . O 9 SO4 A 1 619 1 SO4 SO4 . P 9 SO4 A 1 620 3 SO4 SO4 . Q 9 SO4 A 1 621 4 SO4 SO4 . R 9 SO4 A 1 622 5 SO4 SO4 . S 10 HOH A 1 701 54 HOH HOH . S 10 HOH A 2 702 133 HOH HOH . S 10 HOH A 3 703 80 HOH HOH . S 10 HOH A 4 704 250 HOH HOH . S 10 HOH A 5 705 69 HOH HOH . S 10 HOH A 6 706 3 HOH HOH . S 10 HOH A 7 707 17 HOH HOH . S 10 HOH A 8 708 34 HOH HOH . S 10 HOH A 9 709 38 HOH HOH . S 10 HOH A 10 710 28 HOH HOH . S 10 HOH A 11 711 50 HOH HOH . S 10 HOH A 12 712 186 HOH HOH . S 10 HOH A 13 713 14 HOH HOH . S 10 HOH A 14 714 30 HOH HOH . S 10 HOH A 15 715 12 HOH HOH . S 10 HOH A 16 716 11 HOH HOH . S 10 HOH A 17 717 99 HOH HOH . S 10 HOH A 18 718 15 HOH HOH . S 10 HOH A 19 719 7 HOH HOH . S 10 HOH A 20 720 82 HOH HOH . S 10 HOH A 21 721 36 HOH HOH . S 10 HOH A 22 722 35 HOH HOH . S 10 HOH A 23 723 16 HOH HOH . S 10 HOH A 24 724 222 HOH HOH . S 10 HOH A 25 725 18 HOH HOH . S 10 HOH A 26 726 37 HOH HOH . S 10 HOH A 27 727 200 HOH HOH . S 10 HOH A 28 728 29 HOH HOH . S 10 HOH A 29 729 4 HOH HOH . S 10 HOH A 30 730 105 HOH HOH . S 10 HOH A 31 731 129 HOH HOH . S 10 HOH A 32 732 110 HOH HOH . S 10 HOH A 33 733 5 HOH HOH . S 10 HOH A 34 734 209 HOH HOH . S 10 HOH A 35 735 8 HOH HOH . S 10 HOH A 36 736 185 HOH HOH . S 10 HOH A 37 737 31 HOH HOH . S 10 HOH A 38 738 277 HOH HOH . S 10 HOH A 39 739 2 HOH HOH . S 10 HOH A 40 740 47 HOH HOH . S 10 HOH A 41 741 236 HOH HOH . S 10 HOH A 42 742 120 HOH HOH . S 10 HOH A 43 743 190 HOH HOH . S 10 HOH A 44 744 6 HOH HOH . S 10 HOH A 45 745 58 HOH HOH . S 10 HOH A 46 746 22 HOH HOH . S 10 HOH A 47 747 44 HOH HOH . S 10 HOH A 48 748 39 HOH HOH . S 10 HOH A 49 749 20 HOH HOH . S 10 HOH A 50 750 79 HOH HOH . S 10 HOH A 51 751 1 HOH HOH . S 10 HOH A 52 752 66 HOH HOH . S 10 HOH A 53 753 51 HOH HOH . S 10 HOH A 54 754 40 HOH HOH . S 10 HOH A 55 755 60 HOH HOH . S 10 HOH A 56 756 71 HOH HOH . S 10 HOH A 57 757 276 HOH HOH . S 10 HOH A 58 758 26 HOH HOH . S 10 HOH A 59 759 103 HOH HOH . S 10 HOH A 60 760 21 HOH HOH . S 10 HOH A 61 761 126 HOH HOH . S 10 HOH A 62 762 59 HOH HOH . S 10 HOH A 63 763 88 HOH HOH . S 10 HOH A 64 764 259 HOH HOH . S 10 HOH A 65 765 90 HOH HOH . S 10 HOH A 66 766 125 HOH HOH . S 10 HOH A 67 767 128 HOH HOH . S 10 HOH A 68 768 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HUQ . . . N 8 49.881 16.296 85.723 1 56 ? C01 HUQ 618 A 1 HETATM 2 C C02 HUQ . . . N 8 49.166 16.93 86.918 1 58.96 ? C02 HUQ 618 A 1 HETATM 3 C C03 HUQ . . . N 8 48.084 16.033 87.54 1 67 ? C03 HUQ 618 A 1 HETATM 4 C C04 HUQ . . . N 8 46.817 16.815 87.928 1 75.95 ? C04 HUQ 618 A 1 HETATM 5 C C06 HUQ . . . N 8 45.973 14.488 88.56 1 56.78 ? C06 HUQ 618 A 1 HETATM 6 C C07 HUQ . . . N 8 45.881 16.378 90.228 1 73.89 ? C07 HUQ 618 A 1 HETATM 7 C C08 HUQ . . . N 8 44.325 16.315 88.216 1 71.13 ? C08 HUQ 618 A 1 HETATM 8 C C09 HUQ . . . N 8 44.228 17.823 87.768 1 62.93 ? C09 HUQ 618 A 1 HETATM 9 C C11 HUQ . . . N 8 43.743 19.598 86.021 1 64.26 ? C11 HUQ 618 A 1 HETATM 10 C C12 HUQ . . . N 8 42.361 19.827 85.34 1 56.19 ? C12 HUQ 618 A 1 HETATM 11 C C13 HUQ . . . N 8 41.397 20.801 86.048 1 59.01 ? C13 HUQ 618 A 1 HETATM 12 C C14 HUQ . . . N 8 42.176 22.096 86.411 1 56.28 ? C14 HUQ 618 A 1 HETATM 13 C C15 HUQ . . . N 8 42.329 23.142 85.303 1 53.92 ? C15 HUQ 618 A 1 HETATM 14 C C16 HUQ . . . N 8 41.201 24.199 85.305 1 52.13 ? C16 HUQ 618 A 1 HETATM 15 C C17 HUQ . . . N 8 39.881 23.669 84.757 1 49.35 ? C17 HUQ 618 A 1 HETATM 16 C C18 HUQ . . . N 8 39.386 22.415 85.479 1 59.11 ? C18 HUQ 618 A 1 HETATM 17 C C19 HUQ . . . N 8 40.153 21.11 85.144 1 56.26 ? C19 HUQ 618 A 1 HETATM 18 C C21 HUQ . . . N 8 43.177 15.866 89.185 1 68.35 ? C21 HUQ 618 A 1 HETATM 19 C C22 HUQ . . . N 8 41.86 16.102 88.541 1 64.27 ? C22 HUQ 618 A 1 HETATM 20 C C23 HUQ . . . N 8 41.147 17.331 88.632 1 56.28 ? C23 HUQ 618 A 1 HETATM 21 C C25 HUQ . . . N 8 39.908 15.953 87.274 1 58.26 ? C25 HUQ 618 A 1 HETATM 22 C C26 HUQ . . . N 8 41.067 15.25 87.661 1 56.63 ? C26 HUQ 618 A 1 HETATM 23 C C27 HUQ . . . N 8 41.251 13.922 87.189 1 57.33 ? C27 HUQ 618 A 1 HETATM 24 C C28 HUQ . . . N 8 40.283 13.34 86.351 1 56.56 ? C28 HUQ 618 A 1 HETATM 25 C C29 HUQ . . . N 8 39.12 14.051 85.974 1 61.42 ? C29 HUQ 618 A 1 HETATM 26 C C30 HUQ . . . N 8 38.902 15.364 86.422 1 57.4 ? C30 HUQ 618 A 1 HETATM 27 N N05 HUQ . . . N 8 45.75 15.995 88.748 1 79.08 ? N05 HUQ 618 A 1 HETATM 28 N N10 HUQ . . . N 8 43.887 18.213 86.498 1 58.59 ? N10 HUQ 618 A 1 HETATM 29 N N24 HUQ . . . N 8 39.973 17.208 87.868 1 58.09 ? N24 HUQ 618 A 1 HETATM 30 O O20 HUQ . . . N 8 44.422 18.683 88.668 1 67 ? O20 HUQ 618 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #