data_6QAC # _model_server_result.job_id CGDdpHQ8YKR7BSAC3BqAiw _model_server_result.datetime_utc '2024-11-22 09:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":610}' # _entry.id 6QAC # _exptl.entry_id 6QAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QAC _cell.length_a 154.113 _cell.length_b 154.113 _cell.length_c 127.619 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 4 n D NAG 1 D 1 NAG A 603 NAG 4 n D NAG 2 D 2 NAG A 607 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 65 1_555 A SG CYS 120 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 280 A CYS 252 1_555 A SG CYS 291 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 428 A CYS 400 1_555 A SG CYS 547 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 85 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 134 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 269 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 284 A ASN 256 1_555 F C1 NAG . A NAG 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 369 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 A ND2 ASN 513 A ASN 485 1_555 G C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 339 n n C1 O1 NAG sing 340 n n C1 O5 NAG sing 341 n n C1 H1 NAG sing 342 n n C2 C3 NAG sing 343 n n C2 N2 NAG sing 344 n n C2 H2 NAG sing 345 n n C3 C4 NAG sing 346 n n C3 O3 NAG sing 347 n n C3 H3 NAG sing 348 n n C4 C5 NAG sing 349 n n C4 O4 NAG sing 350 n n C4 H4 NAG sing 351 n n C5 C6 NAG sing 352 n n C5 O5 NAG sing 353 n n C5 H5 NAG sing 354 n n C6 O6 NAG sing 355 n n C6 H61 NAG sing 356 n n C6 H62 NAG sing 357 n n C7 C8 NAG sing 358 n n C7 N2 NAG sing 359 n n C7 O7 NAG doub 360 n n C8 H81 NAG sing 361 n n C8 H82 NAG sing 362 n n C8 H83 NAG sing 363 n n N2 HN2 NAG sing 364 n n O1 HO1 NAG sing 365 n n O3 HO3 NAG sing 366 n n O4 HO4 NAG sing 367 n n O6 HO6 NAG sing 368 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QAC _atom_sites.fract_transf_matrix[1][1] 0.006489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 603 601 NAG NAG . F 5 NAG A 1 609 604 NAG NAG . G 5 NAG A 1 610 606 NAG NAG . H 6 HUT A 1 611 701 HUT 308 . I 7 DMS A 1 612 801 DMS DMS . J 8 SO4 A 1 613 1 SO4 SO4 . K 8 SO4 A 1 614 2 SO4 SO4 . L 8 SO4 A 1 615 3 SO4 SO4 . M 8 SO4 A 1 616 4 SO4 SO4 . N 9 HOH A 1 701 41 HOH HOH . N 9 HOH A 2 702 6 HOH HOH . N 9 HOH A 3 703 35 HOH HOH . N 9 HOH A 4 704 29 HOH HOH . N 9 HOH A 5 705 68 HOH HOH . N 9 HOH A 6 706 34 HOH HOH . N 9 HOH A 7 707 15 HOH HOH . N 9 HOH A 8 708 20 HOH HOH . N 9 HOH A 9 709 11 HOH HOH . N 9 HOH A 10 710 48 HOH HOH . N 9 HOH A 11 711 21 HOH HOH . N 9 HOH A 12 712 22 HOH HOH . N 9 HOH A 13 713 67 HOH HOH . N 9 HOH A 14 714 8 HOH HOH . N 9 HOH A 15 715 63 HOH HOH . N 9 HOH A 16 716 10 HOH HOH . N 9 HOH A 17 717 16 HOH HOH . N 9 HOH A 18 718 32 HOH HOH . N 9 HOH A 19 719 23 HOH HOH . N 9 HOH A 20 720 71 HOH HOH . N 9 HOH A 21 721 12 HOH HOH . N 9 HOH A 22 722 59 HOH HOH . N 9 HOH A 23 723 33 HOH HOH . N 9 HOH A 24 724 58 HOH HOH . N 9 HOH A 25 725 7 HOH HOH . N 9 HOH A 26 726 25 HOH HOH . N 9 HOH A 27 727 27 HOH HOH . N 9 HOH A 28 728 30 HOH HOH . N 9 HOH A 29 729 2 HOH HOH . N 9 HOH A 30 730 3 HOH HOH . N 9 HOH A 31 731 26 HOH HOH . N 9 HOH A 32 732 13 HOH HOH . N 9 HOH A 33 733 9 HOH HOH . N 9 HOH A 34 734 24 HOH HOH . N 9 HOH A 35 735 4 HOH HOH . N 9 HOH A 36 736 61 HOH HOH . N 9 HOH A 37 737 57 HOH HOH . N 9 HOH A 38 738 43 HOH HOH . N 9 HOH A 39 739 18 HOH HOH . N 9 HOH A 40 740 1 HOH HOH . N 9 HOH A 41 741 44 HOH HOH . N 9 HOH A 42 742 40 HOH HOH . N 9 HOH A 43 743 54 HOH HOH . N 9 HOH A 44 744 5 HOH HOH . N 9 HOH A 45 745 69 HOH HOH . N 9 HOH A 46 746 17 HOH HOH . N 9 HOH A 47 747 31 HOH HOH . N 9 HOH A 48 748 60 HOH HOH . N 9 HOH A 49 749 37 HOH HOH . N 9 HOH A 50 750 72 HOH HOH . N 9 HOH A 51 751 65 HOH HOH . N 9 HOH A 52 752 19 HOH HOH . N 9 HOH A 53 753 46 HOH HOH . N 9 HOH A 54 754 28 HOH HOH . N 9 HOH A 55 755 39 HOH HOH . N 9 HOH A 56 756 52 HOH HOH . N 9 HOH A 57 757 47 HOH HOH . N 9 HOH A 58 758 53 HOH HOH . N 9 HOH A 59 759 55 HOH HOH . N 9 HOH A 60 760 66 HOH HOH . N 9 HOH A 61 761 51 HOH HOH . N 9 HOH A 62 762 14 HOH HOH . N 9 HOH A 63 763 50 HOH HOH . N 9 HOH A 64 764 36 HOH HOH . N 9 HOH A 65 765 62 HOH HOH . N 9 HOH A 66 766 70 HOH HOH . N 9 HOH A 67 767 38 HOH HOH . N 9 HOH A 68 768 64 HOH HOH . N 9 HOH A 69 769 49 HOH HOH . N 9 HOH A 70 770 56 HOH HOH . N 9 HOH A 71 771 42 HOH HOH . N 9 HOH A 72 772 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 5 36.752 12.073 47.534 1 95.98 ? C1 NAG 610 A 1 HETATM 2 C C2 NAG . . . G 5 36.489 13.171 46.476 1 87.85 ? C2 NAG 610 A 1 HETATM 3 C C3 NAG . . . G 5 37.707 13.35 45.552 1 100.93 ? C3 NAG 610 A 1 HETATM 4 C C4 NAG . . . G 5 38.97 13.613 46.365 1 101.45 ? C4 NAG 610 A 1 HETATM 5 C C5 NAG . . . G 5 39.203 12.436 47.302 1 108.9 ? C5 NAG 610 A 1 HETATM 6 C C6 NAG . . . G 5 40.427 12.609 48.179 1 121.47 ? C6 NAG 610 A 1 HETATM 7 C C7 NAG . . . G 5 34.146 13.566 45.789 1 83.05 ? C7 NAG 610 A 1 HETATM 8 C C8 NAG . . . G 5 33.049 13.135 44.857 1 71.69 ? C8 NAG 610 A 1 HETATM 9 N N2 NAG . . . G 5 35.299 12.881 45.69 1 75.84 ? N2 NAG 610 A 1 HETATM 10 O O3 NAG . . . G 5 37.477 14.411 44.627 1 84 ? O3 NAG 610 A 1 HETATM 11 O O4 NAG . . . G 5 40.108 13.792 45.527 1 98.99 ? O4 NAG 610 A 1 HETATM 12 O O5 NAG . . . G 5 38.071 12.298 48.177 1 109.16 ? O5 NAG 610 A 1 HETATM 13 O O6 NAG . . . G 5 40.653 11.486 49.023 1 117.85 ? O6 NAG 610 A 1 HETATM 14 O O7 NAG . . . G 5 33.989 14.494 46.599 1 64.29 ? O7 NAG 610 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 14 #