data_6QAC # _model_server_result.job_id 7CfJ3JdyjHzbMJu7nVeWRg _model_server_result.datetime_utc '2024-11-05 22:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":611}' # _entry.id 6QAC # _exptl.entry_id 6QAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.597 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-2-(butylamino)-~{N}-(3-cycloheptylpropyl)-3-(1~{H}-indol-3-yl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QAC _cell.length_a 154.113 _cell.length_b 154.113 _cell.length_c 127.619 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 4 n D NAG 1 D 1 NAG A 603 NAG 4 n D NAG 2 D 2 NAG A 607 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 65 1_555 A SG CYS 120 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 280 A CYS 252 1_555 A SG CYS 291 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 428 A CYS 400 1_555 A SG CYS 547 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 85 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 134 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 269 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 284 A ASN 256 1_555 F C1 NAG . A NAG 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 369 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 A ND2 ASN 513 A ASN 485 1_555 G C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C25 H39 N3 O' _chem_comp.formula_weight 397.597 _chem_comp.id HUT _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-2-(butylamino)-~{N}-(3-cycloheptylpropyl)-3-(1~{H}-indol-3-yl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 HUT sing 184 n n C07 C08 HUT sing 185 n n C03 C02 HUT sing 186 n n C03 C04 HUT sing 187 n n O29 C17 HUT doub 188 n n N05 C06 HUT sing 189 n n N05 C04 HUT sing 190 n n C01 C02 HUT sing 191 n n C06 C17 HUT sing 192 n n C08 C09 HUT doub 193 n y C08 C12 HUT sing 194 n y C09 N10 HUT sing 195 n y C17 N18 HUT sing 196 n n C12 C13 HUT doub 197 n y C12 C11 HUT sing 198 n y N10 C11 HUT sing 199 n y C13 C14 HUT sing 200 n y N18 C19 HUT sing 201 n n C11 C16 HUT doub 202 n y C19 C20 HUT sing 203 n n C21 C22 HUT sing 204 n n C21 C20 HUT sing 205 n n C28 C22 HUT sing 206 n n C28 C27 HUT sing 207 n n C14 C15 HUT doub 208 n y C16 C15 HUT sing 209 n y C24 C23 HUT sing 210 n n C24 C25 HUT sing 211 n n C22 C23 HUT sing 212 n n C27 C26 HUT sing 213 n n C25 C26 HUT sing 214 n n C01 H1 HUT sing 215 n n C01 H2 HUT sing 216 n n C01 H3 HUT sing 217 n n C02 H4 HUT sing 218 n n C02 H5 HUT sing 219 n n C03 H6 HUT sing 220 n n C03 H7 HUT sing 221 n n C04 H8 HUT sing 222 n n C04 H9 HUT sing 223 n n C06 H10 HUT sing 224 n n C07 H11 HUT sing 225 n n C07 H12 HUT sing 226 n n C09 H13 HUT sing 227 n n C13 H14 HUT sing 228 n n C14 H15 HUT sing 229 n n C15 H16 HUT sing 230 n n C16 H17 HUT sing 231 n n C19 H18 HUT sing 232 n n C19 H19 HUT sing 233 n n C20 H20 HUT sing 234 n n C20 H21 HUT sing 235 n n C21 H22 HUT sing 236 n n C21 H23 HUT sing 237 n n C22 H24 HUT sing 238 n n C23 H25 HUT sing 239 n n C23 H26 HUT sing 240 n n C24 H27 HUT sing 241 n n C24 H28 HUT sing 242 n n C25 H29 HUT sing 243 n n C25 H30 HUT sing 244 n n C26 H31 HUT sing 245 n n C26 H32 HUT sing 246 n n C27 H33 HUT sing 247 n n C27 H34 HUT sing 248 n n C28 H35 HUT sing 249 n n C28 H36 HUT sing 250 n n N05 H37 HUT sing 251 n n N10 H39 HUT sing 252 n n N18 H40 HUT sing 253 n n # _atom_sites.entry_id 6QAC _atom_sites.fract_transf_matrix[1][1] 0.006489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 603 601 NAG NAG . F 5 NAG A 1 609 604 NAG NAG . G 5 NAG A 1 610 606 NAG NAG . H 6 HUT A 1 611 701 HUT 308 . I 7 DMS A 1 612 801 DMS DMS . J 8 SO4 A 1 613 1 SO4 SO4 . K 8 SO4 A 1 614 2 SO4 SO4 . L 8 SO4 A 1 615 3 SO4 SO4 . M 8 SO4 A 1 616 4 SO4 SO4 . N 9 HOH A 1 701 41 HOH HOH . N 9 HOH A 2 702 6 HOH HOH . N 9 HOH A 3 703 35 HOH HOH . N 9 HOH A 4 704 29 HOH HOH . N 9 HOH A 5 705 68 HOH HOH . N 9 HOH A 6 706 34 HOH HOH . N 9 HOH A 7 707 15 HOH HOH . N 9 HOH A 8 708 20 HOH HOH . N 9 HOH A 9 709 11 HOH HOH . N 9 HOH A 10 710 48 HOH HOH . N 9 HOH A 11 711 21 HOH HOH . N 9 HOH A 12 712 22 HOH HOH . N 9 HOH A 13 713 67 HOH HOH . N 9 HOH A 14 714 8 HOH HOH . N 9 HOH A 15 715 63 HOH HOH . N 9 HOH A 16 716 10 HOH HOH . N 9 HOH A 17 717 16 HOH HOH . N 9 HOH A 18 718 32 HOH HOH . N 9 HOH A 19 719 23 HOH HOH . N 9 HOH A 20 720 71 HOH HOH . N 9 HOH A 21 721 12 HOH HOH . N 9 HOH A 22 722 59 HOH HOH . N 9 HOH A 23 723 33 HOH HOH . N 9 HOH A 24 724 58 HOH HOH . N 9 HOH A 25 725 7 HOH HOH . N 9 HOH A 26 726 25 HOH HOH . N 9 HOH A 27 727 27 HOH HOH . N 9 HOH A 28 728 30 HOH HOH . N 9 HOH A 29 729 2 HOH HOH . N 9 HOH A 30 730 3 HOH HOH . N 9 HOH A 31 731 26 HOH HOH . N 9 HOH A 32 732 13 HOH HOH . N 9 HOH A 33 733 9 HOH HOH . N 9 HOH A 34 734 24 HOH HOH . N 9 HOH A 35 735 4 HOH HOH . N 9 HOH A 36 736 61 HOH HOH . N 9 HOH A 37 737 57 HOH HOH . N 9 HOH A 38 738 43 HOH HOH . N 9 HOH A 39 739 18 HOH HOH . N 9 HOH A 40 740 1 HOH HOH . N 9 HOH A 41 741 44 HOH HOH . N 9 HOH A 42 742 40 HOH HOH . N 9 HOH A 43 743 54 HOH HOH . N 9 HOH A 44 744 5 HOH HOH . N 9 HOH A 45 745 69 HOH HOH . N 9 HOH A 46 746 17 HOH HOH . N 9 HOH A 47 747 31 HOH HOH . N 9 HOH A 48 748 60 HOH HOH . N 9 HOH A 49 749 37 HOH HOH . N 9 HOH A 50 750 72 HOH HOH . N 9 HOH A 51 751 65 HOH HOH . N 9 HOH A 52 752 19 HOH HOH . N 9 HOH A 53 753 46 HOH HOH . N 9 HOH A 54 754 28 HOH HOH . N 9 HOH A 55 755 39 HOH HOH . N 9 HOH A 56 756 52 HOH HOH . N 9 HOH A 57 757 47 HOH HOH . N 9 HOH A 58 758 53 HOH HOH . N 9 HOH A 59 759 55 HOH HOH . N 9 HOH A 60 760 66 HOH HOH . N 9 HOH A 61 761 51 HOH HOH . N 9 HOH A 62 762 14 HOH HOH . N 9 HOH A 63 763 50 HOH HOH . N 9 HOH A 64 764 36 HOH HOH . N 9 HOH A 65 765 62 HOH HOH . N 9 HOH A 66 766 70 HOH HOH . N 9 HOH A 67 767 38 HOH HOH . N 9 HOH A 68 768 64 HOH HOH . N 9 HOH A 69 769 49 HOH HOH . N 9 HOH A 70 770 56 HOH HOH . N 9 HOH A 71 771 42 HOH HOH . N 9 HOH A 72 772 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HUT . . . H 6 12.175 49.424 39.033 1 56.79 ? C01 HUT 611 A 1 HETATM 2 C C02 HUT . . . H 6 13.406 48.575 39.368 1 61.71 ? C02 HUT 611 A 1 HETATM 3 C C03 HUT . . . H 6 13.333 47.121 38.832 1 66.24 ? C03 HUT 611 A 1 HETATM 4 C C04 HUT . . . H 6 14.208 46.15 39.662 1 51.94 ? C04 HUT 611 A 1 HETATM 5 C C06 HUT . . . H 6 15.359 43.985 39.595 1 57.52 ? C06 HUT 611 A 1 HETATM 6 C C07 HUT . . . H 6 15.587 42.712 38.78 1 58.68 ? C07 HUT 611 A 1 HETATM 7 C C08 HUT . . . H 6 15.956 41.589 39.618 1 53.81 ? C08 HUT 611 A 1 HETATM 8 C C09 HUT . . . H 6 17.21 41.001 39.653 1 47.19 ? C09 HUT 611 A 1 HETATM 9 C C11 HUT . . . H 6 15.9 39.917 41.162 1 53.57 ? C11 HUT 611 A 1 HETATM 10 C C12 HUT . . . H 6 15.127 40.932 40.555 1 51.38 ? C12 HUT 611 A 1 HETATM 11 C C13 HUT . . . H 6 13.793 41.073 40.966 1 55.71 ? C13 HUT 611 A 1 HETATM 12 C C14 HUT . . . H 6 13.275 40.212 41.934 1 55.9 ? C14 HUT 611 A 1 HETATM 13 C C15 HUT . . . H 6 14.043 39.199 42.512 1 41.8 ? C15 HUT 611 A 1 HETATM 14 C C16 HUT . . . H 6 15.374 39.032 42.14 1 46.41 ? C16 HUT 611 A 1 HETATM 15 C C17 HUT . . . H 6 16.749 44.663 39.821 1 58.37 ? C17 HUT 611 A 1 HETATM 16 C C19 HUT . . . H 6 18.414 45.446 41.459 1 53.33 ? C19 HUT 611 A 1 HETATM 17 C C20 HUT . . . H 6 19.318 44.544 42.312 1 59.9 ? C20 HUT 611 A 1 HETATM 18 C C21 HUT . . . H 6 19.898 43.398 41.466 1 43.93 ? C21 HUT 611 A 1 HETATM 19 C C22 HUT . . . H 6 20.737 42.417 42.28 1 58.6 ? C22 HUT 611 A 1 HETATM 20 C C23 HUT . . . H 6 22.136 43 42.719 1 57.69 ? C23 HUT 611 A 1 HETATM 21 C C24 HUT . . . H 6 23.426 42.379 42.159 1 50.71 ? C24 HUT 611 A 1 HETATM 22 C C25 HUT . . . H 6 23.786 41.025 42.753 1 49.24 ? C25 HUT 611 A 1 HETATM 23 C C26 HUT . . . H 6 22.605 40.378 43.48 1 61.52 ? C26 HUT 611 A 1 HETATM 24 C C27 HUT . . . H 6 21.472 39.923 42.544 1 63.34 ? C27 HUT 611 A 1 HETATM 25 C C28 HUT . . . H 6 20.855 41.018 41.655 1 60.28 ? C28 HUT 611 A 1 HETATM 26 N N05 HUT . . . H 6 14.504 44.946 38.906 1 57.32 ? N05 HUT 611 A 1 HETATM 27 N N10 HUT . . . H 6 17.196 39.964 40.597 1 56.25 ? N10 HUT 611 A 1 HETATM 28 N N18 HUT . . . H 6 17.148 44.809 41.142 1 50.7 ? N18 HUT 611 A 1 HETATM 29 O O29 HUT . . . H 6 17.474 45.061 38.897 1 55.24 ? O29 HUT 611 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #