data_6QAD # _model_server_result.job_id Ej3S4gNNgen0C9LJZ26mxw _model_server_result.datetime_utc '2024-11-06 01:41:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":613}' # _entry.id 6QAD # _exptl.entry_id 6QAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QAD _cell.length_a 155.269 _cell.length_b 155.269 _cell.length_c 129.922 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 3 n D NAG 1 D 1 NAG A 603 NAG 3 n D NAG 2 D 2 NAG A 607 NAG 3 n D FUC 3 D 3 FUC A 608 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 65 1_555 A SG CYS 120 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 280 A CYS 252 1_555 A SG CYS 291 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 428 A CYS 400 1_555 A SG CYS 547 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 A ND2 ASN 85 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 134 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 269 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 284 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 A ND2 ASN 369 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 A ND2 ASN 513 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 6QAD _atom_sites.fract_transf_matrix[1][1] 0.00644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 603 601 NAG NAG . F 4 NAG A 1 610 604 NAG NAG . G 4 NAG A 1 611 606 NAG NAG . H 5 DMS A 1 612 701 DMS DMS . I 6 GOL A 1 613 901 GOL GOL . J 6 GOL A 1 614 1001 GOL GOL . K 6 GOL A 1 615 1101 GOL GOL . L 6 GOL A 1 616 1401 GOL GOL . M 7 MES A 1 617 1601 MES MES . N 8 HUZ A 1 618 1701 HUZ 333 . O 9 SO4 A 1 619 1 SO4 SO4 . P 9 SO4 A 1 620 3 SO4 SO4 . Q 9 SO4 A 1 621 4 SO4 SO4 . R 9 SO4 A 1 622 5 SO4 SO4 . S 10 HOH A 1 701 54 HOH HOH . S 10 HOH A 2 702 33 HOH HOH . S 10 HOH A 3 703 53 HOH HOH . S 10 HOH A 4 704 80 HOH HOH . S 10 HOH A 5 705 4 HOH HOH . S 10 HOH A 6 706 28 HOH HOH . S 10 HOH A 7 707 16 HOH HOH . S 10 HOH A 8 708 240 HOH HOH . S 10 HOH A 9 709 17 HOH HOH . S 10 HOH A 10 710 30 HOH HOH . S 10 HOH A 11 711 7 HOH HOH . S 10 HOH A 12 712 56 HOH HOH . S 10 HOH A 13 713 31 HOH HOH . S 10 HOH A 14 714 92 HOH HOH . S 10 HOH A 15 715 14 HOH HOH . S 10 HOH A 16 716 6 HOH HOH . S 10 HOH A 17 717 110 HOH HOH . S 10 HOH A 18 718 34 HOH HOH . S 10 HOH A 19 719 120 HOH HOH . S 10 HOH A 20 720 11 HOH HOH . S 10 HOH A 21 721 91 HOH HOH . S 10 HOH A 22 722 200 HOH HOH . S 10 HOH A 23 723 154 HOH HOH . S 10 HOH A 24 724 2 HOH HOH . S 10 HOH A 25 725 47 HOH HOH . S 10 HOH A 26 726 36 HOH HOH . S 10 HOH A 27 727 99 HOH HOH . S 10 HOH A 28 728 35 HOH HOH . S 10 HOH A 29 729 58 HOH HOH . S 10 HOH A 30 730 3 HOH HOH . S 10 HOH A 31 731 9 HOH HOH . S 10 HOH A 32 732 19 HOH HOH . S 10 HOH A 33 733 217 HOH HOH . S 10 HOH A 34 734 69 HOH HOH . S 10 HOH A 35 735 18 HOH HOH . S 10 HOH A 36 736 79 HOH HOH . S 10 HOH A 37 737 1 HOH HOH . S 10 HOH A 38 738 78 HOH HOH . S 10 HOH A 39 739 105 HOH HOH . S 10 HOH A 40 740 103 HOH HOH . S 10 HOH A 41 741 20 HOH HOH . S 10 HOH A 42 742 46 HOH HOH . S 10 HOH A 43 743 39 HOH HOH . S 10 HOH A 44 744 126 HOH HOH . S 10 HOH A 45 745 192 HOH HOH . S 10 HOH A 46 746 62 HOH HOH . S 10 HOH A 47 747 22 HOH HOH . S 10 HOH A 48 748 8 HOH HOH . S 10 HOH A 49 749 26 HOH HOH . S 10 HOH A 50 750 76 HOH HOH . S 10 HOH A 51 751 66 HOH HOH . S 10 HOH A 52 752 73 HOH HOH . S 10 HOH A 53 753 60 HOH HOH . S 10 HOH A 54 754 40 HOH HOH . S 10 HOH A 55 755 21 HOH HOH . S 10 HOH A 56 756 259 HOH HOH . S 10 HOH A 57 757 205 HOH HOH . S 10 HOH A 58 758 121 HOH HOH . S 10 HOH A 59 759 59 HOH HOH . S 10 HOH A 60 760 88 HOH HOH . S 10 HOH A 61 761 64 HOH HOH . S 10 HOH A 62 762 90 HOH HOH . S 10 HOH A 63 763 260 HOH HOH . S 10 HOH A 64 764 128 HOH HOH . S 10 HOH A 65 765 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 6 33.829 35.948 44.383 1 78.2 ? C1 GOL 613 A 1 HETATM 2 O O1 GOL . . . I 6 33.073 34.798 44.553 1 70.16 ? O1 GOL 613 A 1 HETATM 3 C C2 GOL . . . I 6 33.93 36.205 42.875 1 81.39 ? C2 GOL 613 A 1 HETATM 4 O O2 GOL . . . I 6 35.036 36.977 42.557 1 70.39 ? O2 GOL 613 A 1 HETATM 5 C C3 GOL . . . I 6 32.615 36.925 42.545 1 68.98 ? C3 GOL 613 A 1 HETATM 6 O O3 GOL . . . I 6 31.593 36.06 42.918 1 70.72 ? O3 GOL 613 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #