data_6QAD # _model_server_result.job_id Ul5aCrfQxHGbXjiCpxTgbQ _model_server_result.datetime_utc '2024-11-06 01:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":618}' # _entry.id 6QAD # _exptl.entry_id 6QAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.611 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-2-(butylamino)-~{N}-[2-[4-(dimethylamino)cyclohexyl]ethyl]-3-(1~{H}-indol-3-yl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QAD _cell.length_a 155.269 _cell.length_b 155.269 _cell.length_c 129.922 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 3 n D NAG 1 D 1 NAG A 603 NAG 3 n D NAG 2 D 2 NAG A 607 NAG 3 n D FUC 3 D 3 FUC A 608 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 65 1_555 A SG CYS 120 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 280 A CYS 252 1_555 A SG CYS 291 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 428 A CYS 400 1_555 A SG CYS 547 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 A ND2 ASN 85 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 134 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 269 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 284 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 A ND2 ASN 369 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 A ND2 ASN 513 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C25 H40 N4 O' _chem_comp.formula_weight 412.611 _chem_comp.id HUZ _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-2-(butylamino)-~{N}-[2-[4-(dimethylamino)cyclohexyl]ethyl]-3-(1~{H}-indol-3-yl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 HUZ sing 197 n n C16 C15 HUZ sing 198 n n C18 C17 HUZ doub 199 n y C18 N19 HUZ sing 200 n y O01 C02 HUZ doub 201 n n C27 N26 HUZ sing 202 n n C27 C28 HUZ sing 203 n n C17 C21 HUZ sing 204 n y N26 C15 HUZ sing 205 n n N19 C20 HUZ sing 206 n y C29 C28 HUZ sing 207 n n C29 C30 HUZ sing 208 n n C15 C02 HUZ sing 209 n n C02 N03 HUZ sing 210 n n C21 C20 HUZ doub 211 n y C21 C22 HUZ sing 212 n y C14 C13 HUZ sing 213 n n C14 C06 HUZ sing 214 n n C20 C25 HUZ sing 215 n y C05 C06 HUZ sing 216 n n C05 C04 HUZ sing 217 n n C22 C23 HUZ doub 218 n y C13 C09 HUZ sing 219 n n N03 C04 HUZ sing 220 n n C06 C07 HUZ sing 221 n n C25 C24 HUZ doub 222 n y C23 C24 HUZ sing 223 n y C11 N10 HUZ sing 224 n n C09 N10 HUZ sing 225 n n C09 C08 HUZ sing 226 n n C07 C08 HUZ sing 227 n n N10 C12 HUZ sing 228 n n C23 H1 HUZ sing 229 n n C24 H2 HUZ sing 230 n n C25 H3 HUZ sing 231 n n N26 H4 HUZ sing 232 n n C14 H6 HUZ sing 233 n n C14 H7 HUZ sing 234 n n C15 H8 HUZ sing 235 n n C16 H9 HUZ sing 236 n n C16 H10 HUZ sing 237 n n C13 H11 HUZ sing 238 n n C13 H12 HUZ sing 239 n n C12 H13 HUZ sing 240 n n C12 H14 HUZ sing 241 n n C12 H15 HUZ sing 242 n n C11 H16 HUZ sing 243 n n C11 H17 HUZ sing 244 n n C11 H18 HUZ sing 245 n n C04 H19 HUZ sing 246 n n C04 H20 HUZ sing 247 n n C05 H21 HUZ sing 248 n n C05 H22 HUZ sing 249 n n C06 H23 HUZ sing 250 n n C07 H24 HUZ sing 251 n n C07 H25 HUZ sing 252 n n C08 H26 HUZ sing 253 n n C08 H27 HUZ sing 254 n n C09 H28 HUZ sing 255 n n C18 H29 HUZ sing 256 n n C22 H30 HUZ sing 257 n n C27 H31 HUZ sing 258 n n C27 H32 HUZ sing 259 n n C28 H33 HUZ sing 260 n n C28 H34 HUZ sing 261 n n C29 H35 HUZ sing 262 n n C29 H36 HUZ sing 263 n n C30 H37 HUZ sing 264 n n C30 H38 HUZ sing 265 n n C30 H39 HUZ sing 266 n n N03 H40 HUZ sing 267 n n N19 H42 HUZ sing 268 n n # _atom_sites.entry_id 6QAD _atom_sites.fract_transf_matrix[1][1] 0.00644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 603 601 NAG NAG . F 4 NAG A 1 610 604 NAG NAG . G 4 NAG A 1 611 606 NAG NAG . H 5 DMS A 1 612 701 DMS DMS . I 6 GOL A 1 613 901 GOL GOL . J 6 GOL A 1 614 1001 GOL GOL . K 6 GOL A 1 615 1101 GOL GOL . L 6 GOL A 1 616 1401 GOL GOL . M 7 MES A 1 617 1601 MES MES . N 8 HUZ A 1 618 1701 HUZ 333 . O 9 SO4 A 1 619 1 SO4 SO4 . P 9 SO4 A 1 620 3 SO4 SO4 . Q 9 SO4 A 1 621 4 SO4 SO4 . R 9 SO4 A 1 622 5 SO4 SO4 . S 10 HOH A 1 701 54 HOH HOH . S 10 HOH A 2 702 33 HOH HOH . S 10 HOH A 3 703 53 HOH HOH . S 10 HOH A 4 704 80 HOH HOH . S 10 HOH A 5 705 4 HOH HOH . S 10 HOH A 6 706 28 HOH HOH . S 10 HOH A 7 707 16 HOH HOH . S 10 HOH A 8 708 240 HOH HOH . S 10 HOH A 9 709 17 HOH HOH . S 10 HOH A 10 710 30 HOH HOH . S 10 HOH A 11 711 7 HOH HOH . S 10 HOH A 12 712 56 HOH HOH . S 10 HOH A 13 713 31 HOH HOH . S 10 HOH A 14 714 92 HOH HOH . S 10 HOH A 15 715 14 HOH HOH . S 10 HOH A 16 716 6 HOH HOH . S 10 HOH A 17 717 110 HOH HOH . S 10 HOH A 18 718 34 HOH HOH . S 10 HOH A 19 719 120 HOH HOH . S 10 HOH A 20 720 11 HOH HOH . S 10 HOH A 21 721 91 HOH HOH . S 10 HOH A 22 722 200 HOH HOH . S 10 HOH A 23 723 154 HOH HOH . S 10 HOH A 24 724 2 HOH HOH . S 10 HOH A 25 725 47 HOH HOH . S 10 HOH A 26 726 36 HOH HOH . S 10 HOH A 27 727 99 HOH HOH . S 10 HOH A 28 728 35 HOH HOH . S 10 HOH A 29 729 58 HOH HOH . S 10 HOH A 30 730 3 HOH HOH . S 10 HOH A 31 731 9 HOH HOH . S 10 HOH A 32 732 19 HOH HOH . S 10 HOH A 33 733 217 HOH HOH . S 10 HOH A 34 734 69 HOH HOH . S 10 HOH A 35 735 18 HOH HOH . S 10 HOH A 36 736 79 HOH HOH . S 10 HOH A 37 737 1 HOH HOH . S 10 HOH A 38 738 78 HOH HOH . S 10 HOH A 39 739 105 HOH HOH . S 10 HOH A 40 740 103 HOH HOH . S 10 HOH A 41 741 20 HOH HOH . S 10 HOH A 42 742 46 HOH HOH . S 10 HOH A 43 743 39 HOH HOH . S 10 HOH A 44 744 126 HOH HOH . S 10 HOH A 45 745 192 HOH HOH . S 10 HOH A 46 746 62 HOH HOH . S 10 HOH A 47 747 22 HOH HOH . S 10 HOH A 48 748 8 HOH HOH . S 10 HOH A 49 749 26 HOH HOH . S 10 HOH A 50 750 76 HOH HOH . S 10 HOH A 51 751 66 HOH HOH . S 10 HOH A 52 752 73 HOH HOH . S 10 HOH A 53 753 60 HOH HOH . S 10 HOH A 54 754 40 HOH HOH . S 10 HOH A 55 755 21 HOH HOH . S 10 HOH A 56 756 259 HOH HOH . S 10 HOH A 57 757 205 HOH HOH . S 10 HOH A 58 758 121 HOH HOH . S 10 HOH A 59 759 59 HOH HOH . S 10 HOH A 60 760 88 HOH HOH . S 10 HOH A 61 761 64 HOH HOH . S 10 HOH A 62 762 90 HOH HOH . S 10 HOH A 63 763 260 HOH HOH . S 10 HOH A 64 764 128 HOH HOH . S 10 HOH A 65 765 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 HUZ . . . N 8 13.913 40.939 41.992 1 51.2 ? C23 HUZ 618 A 1 HETATM 2 C C24 HUZ . . . N 8 15.07 40.167 42.225 1 68.36 ? C24 HUZ 618 A 1 HETATM 3 C C25 HUZ . . . N 8 16.239 40.431 41.543 1 51.85 ? C25 HUZ 618 A 1 HETATM 4 N N26 HUZ . . . N 8 12.973 46.14 39.558 1 60.8 ? N26 HUZ 618 A 1 HETATM 5 C C21 HUZ . . . N 8 15.073 42.281 40.362 1 48.34 ? C21 HUZ 618 A 1 HETATM 6 C C14 HUZ . . . N 8 19.852 44.67 40.534 1 60.25 ? C14 HUZ 618 A 1 HETATM 7 C C15 HUZ . . . N 8 14.21 45.351 39.888 1 49.84 ? C15 HUZ 618 A 1 HETATM 8 C C16 HUZ . . . N 8 14.556 44.307 38.787 1 51.48 ? C16 HUZ 618 A 1 HETATM 9 C C13 HUZ . . . N 8 20.683 43.541 41.148 1 49.21 ? C13 HUZ 618 A 1 HETATM 10 C C12 HUZ . . . N 8 21.249 42.08 44.332 1 44 ? C12 HUZ 618 A 1 HETATM 11 C C11 HUZ . . . N 8 22.096 41.486 42.166 1 58.57 ? C11 HUZ 618 A 1 HETATM 12 C C02 HUZ . . . N 8 15.481 46.281 40.067 1 67.71 ? C02 HUZ 618 A 1 HETATM 13 C C04 HUZ . . . N 8 17.225 47.276 41.659 1 60.18 ? C04 HUZ 618 A 1 HETATM 14 C C05 HUZ . . . N 8 18.489 46.805 40.86 1 59 ? C05 HUZ 618 A 1 HETATM 15 C C06 HUZ . . . N 8 19.393 45.728 41.542 1 60.25 ? C06 HUZ 618 A 1 HETATM 16 C C07 HUZ . . . N 8 18.681 45.003 42.706 1 52.29 ? C07 HUZ 618 A 1 HETATM 17 C C08 HUZ . . . N 8 19.478 43.853 43.336 1 55.19 ? C08 HUZ 618 A 1 HETATM 18 C C09 HUZ . . . N 8 19.95 42.808 42.303 1 50.76 ? C09 HUZ 618 A 1 HETATM 19 C C17 HUZ . . . N 8 15.417 43.25 39.355 1 55.73 ? C17 HUZ 618 A 1 HETATM 20 C C18 HUZ . . . N 8 16.736 43.037 39.055 1 57.45 ? C18 HUZ 618 A 1 HETATM 21 C C20 HUZ . . . N 8 16.214 41.485 40.622 1 48.94 ? C20 HUZ 618 A 1 HETATM 22 C C22 HUZ . . . N 8 13.916 41.971 41.084 1 52.03 ? C22 HUZ 618 A 1 HETATM 23 C C27 HUZ . . . N 8 13.167 47.543 39.145 1 58.21 ? C27 HUZ 618 A 1 HETATM 24 C C28 HUZ . . . N 8 12.669 48.56 40.17 1 61.78 ? C28 HUZ 618 A 1 HETATM 25 C C29 HUZ . . . N 8 11.276 49.094 39.836 1 61.18 ? C29 HUZ 618 A 1 HETATM 26 C C30 HUZ . . . N 8 10.86 50.283 40.676 1 52.53 ? C30 HUZ 618 A 1 HETATM 27 N N03 HUZ . . . N 8 16.021 46.447 41.364 1 71.92 ? N03 HUZ 618 A 1 HETATM 28 N N10 HUZ . . . N 8 20.846 41.718 42.945 1 52.42 ? N10 HUZ 618 A 1 HETATM 29 N N19 HUZ . . . N 8 17.249 41.962 39.799 1 60.86 ? N19 HUZ 618 A 1 HETATM 30 O O01 HUZ . . . N 8 16.02 46.807 39.111 1 77.24 ? O01 HUZ 618 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #