data_6QAE # _model_server_result.job_id o_t_3W0zPYDZbTlr0UAobA _model_server_result.datetime_utc '2024-11-05 23:08:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":610}' # _entry.id 6QAE # _exptl.entry_id 6QAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QAE _cell.length_a 153.744 _cell.length_b 153.744 _cell.length_c 126.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 3 n D NAG 1 D 1 NAG A 603 NAG 3 n D NAG 2 D 2 NAG A 607 NAG 3 n D FUC 3 D 3 FUC A 608 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 65 1_555 A SG CYS 120 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 280 A CYS 252 1_555 A SG CYS 291 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 428 A CYS 400 1_555 A SG CYS 547 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? covale ? covale1 A ND2 ASN 85 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 134 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 269 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 A ND2 ASN 284 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale5 A ND2 ASN 369 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 A ND2 ASN 513 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 336 n n C1 O1 NAG sing 337 n n C1 O5 NAG sing 338 n n C1 H1 NAG sing 339 n n C2 C3 NAG sing 340 n n C2 N2 NAG sing 341 n n C2 H2 NAG sing 342 n n C3 C4 NAG sing 343 n n C3 O3 NAG sing 344 n n C3 H3 NAG sing 345 n n C4 C5 NAG sing 346 n n C4 O4 NAG sing 347 n n C4 H4 NAG sing 348 n n C5 C6 NAG sing 349 n n C5 O5 NAG sing 350 n n C5 H5 NAG sing 351 n n C6 O6 NAG sing 352 n n C6 H61 NAG sing 353 n n C6 H62 NAG sing 354 n n C7 C8 NAG sing 355 n n C7 N2 NAG sing 356 n n C7 O7 NAG doub 357 n n C8 H81 NAG sing 358 n n C8 H82 NAG sing 359 n n C8 H83 NAG sing 360 n n N2 HN2 NAG sing 361 n n O1 HO1 NAG sing 362 n n O3 HO3 NAG sing 363 n n O4 HO4 NAG sing 364 n n O6 HO6 NAG sing 365 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QAE _atom_sites.fract_transf_matrix[1][1] 0.006504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 603 601 NAG NAG . F 4 NAG A 1 610 604 NAG NAG . G 4 NAG A 1 611 606 NAG NAG . H 5 HUK A 1 612 701 HUK 348 . I 6 SO4 A 1 613 1 SO4 SO4 . J 6 SO4 A 1 614 2 SO4 SO4 . K 6 SO4 A 1 615 3 SO4 SO4 . L 6 SO4 A 1 616 4 SO4 SO4 . M 6 SO4 A 1 617 5 SO4 SO4 . N 7 HOH A 1 701 178 HOH HOH . N 7 HOH A 2 702 170 HOH HOH . N 7 HOH A 3 703 173 HOH HOH . N 7 HOH A 4 704 54 HOH HOH . N 7 HOH A 5 705 29 HOH HOH . N 7 HOH A 6 706 56 HOH HOH . N 7 HOH A 7 707 51 HOH HOH . N 7 HOH A 8 708 14 HOH HOH . N 7 HOH A 9 709 163 HOH HOH . N 7 HOH A 10 710 39 HOH HOH . N 7 HOH A 11 711 131 HOH HOH . N 7 HOH A 12 712 50 HOH HOH . N 7 HOH A 13 713 15 HOH HOH . N 7 HOH A 14 714 175 HOH HOH . N 7 HOH A 15 715 171 HOH HOH . N 7 HOH A 16 716 9 HOH HOH . N 7 HOH A 17 717 73 HOH HOH . N 7 HOH A 18 718 96 HOH HOH . N 7 HOH A 19 719 31 HOH HOH . N 7 HOH A 20 720 116 HOH HOH . N 7 HOH A 21 721 2 HOH HOH . N 7 HOH A 22 722 3 HOH HOH . N 7 HOH A 23 723 32 HOH HOH . N 7 HOH A 24 724 12 HOH HOH . N 7 HOH A 25 725 146 HOH HOH . N 7 HOH A 26 726 126 HOH HOH . N 7 HOH A 27 727 169 HOH HOH . N 7 HOH A 28 728 25 HOH HOH . N 7 HOH A 29 729 18 HOH HOH . N 7 HOH A 30 730 42 HOH HOH . N 7 HOH A 31 731 7 HOH HOH . N 7 HOH A 32 732 23 HOH HOH . N 7 HOH A 33 733 44 HOH HOH . N 7 HOH A 34 734 35 HOH HOH . N 7 HOH A 35 735 33 HOH HOH . N 7 HOH A 36 736 37 HOH HOH . N 7 HOH A 37 737 127 HOH HOH . N 7 HOH A 38 738 40 HOH HOH . N 7 HOH A 39 739 30 HOH HOH . N 7 HOH A 40 740 22 HOH HOH . N 7 HOH A 41 741 16 HOH HOH . N 7 HOH A 42 742 47 HOH HOH . N 7 HOH A 43 743 53 HOH HOH . N 7 HOH A 44 744 72 HOH HOH . N 7 HOH A 45 745 10 HOH HOH . N 7 HOH A 46 746 145 HOH HOH . N 7 HOH A 47 747 36 HOH HOH . N 7 HOH A 48 748 133 HOH HOH . N 7 HOH A 49 749 75 HOH HOH . N 7 HOH A 50 750 4 HOH HOH . N 7 HOH A 51 751 144 HOH HOH . N 7 HOH A 52 752 155 HOH HOH . N 7 HOH A 53 753 48 HOH HOH . N 7 HOH A 54 754 165 HOH HOH . N 7 HOH A 55 755 34 HOH HOH . N 7 HOH A 56 756 45 HOH HOH . N 7 HOH A 57 757 43 HOH HOH . N 7 HOH A 58 758 11 HOH HOH . N 7 HOH A 59 759 76 HOH HOH . N 7 HOH A 60 760 107 HOH HOH . N 7 HOH A 61 761 1 HOH HOH . N 7 HOH A 62 762 26 HOH HOH . N 7 HOH A 63 763 60 HOH HOH . N 7 HOH A 64 764 57 HOH HOH . N 7 HOH A 65 765 66 HOH HOH . N 7 HOH A 66 766 130 HOH HOH . N 7 HOH A 67 767 41 HOH HOH . N 7 HOH A 68 768 176 HOH HOH . N 7 HOH A 69 769 138 HOH HOH . N 7 HOH A 70 770 20 HOH HOH . N 7 HOH A 71 771 151 HOH HOH . N 7 HOH A 72 772 5 HOH HOH . N 7 HOH A 73 773 27 HOH HOH . N 7 HOH A 74 774 125 HOH HOH . N 7 HOH A 75 775 168 HOH HOH . N 7 HOH A 76 776 38 HOH HOH . N 7 HOH A 77 777 174 HOH HOH . N 7 HOH A 78 778 108 HOH HOH . N 7 HOH A 79 779 8 HOH HOH . N 7 HOH A 80 780 28 HOH HOH . N 7 HOH A 81 781 74 HOH HOH . N 7 HOH A 82 782 52 HOH HOH . N 7 HOH A 83 783 64 HOH HOH . N 7 HOH A 84 784 91 HOH HOH . N 7 HOH A 85 785 84 HOH HOH . N 7 HOH A 86 786 103 HOH HOH . N 7 HOH A 87 787 110 HOH HOH . N 7 HOH A 88 788 21 HOH HOH . N 7 HOH A 89 789 167 HOH HOH . N 7 HOH A 90 790 123 HOH HOH . N 7 HOH A 91 791 159 HOH HOH . N 7 HOH A 92 792 85 HOH HOH . N 7 HOH A 93 793 162 HOH HOH . N 7 HOH A 94 794 62 HOH HOH . N 7 HOH A 95 795 166 HOH HOH . N 7 HOH A 96 796 172 HOH HOH . N 7 HOH A 97 797 104 HOH HOH . N 7 HOH A 98 798 158 HOH HOH . N 7 HOH A 99 799 149 HOH HOH . N 7 HOH A 100 800 106 HOH HOH . N 7 HOH A 101 801 61 HOH HOH . N 7 HOH A 102 802 92 HOH HOH . N 7 HOH A 103 803 90 HOH HOH . N 7 HOH A 104 804 63 HOH HOH . N 7 HOH A 105 805 88 HOH HOH . N 7 HOH A 106 806 111 HOH HOH . N 7 HOH A 107 807 177 HOH HOH . N 7 HOH A 108 808 78 HOH HOH . N 7 HOH A 109 809 71 HOH HOH . N 7 HOH A 110 810 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 162.811 107.441 14.526 1 114.88 ? C1 NAG 610 A 1 HETATM 2 C C2 NAG . . . F 4 161.79 108.452 13.956 1 109.65 ? C2 NAG 610 A 1 HETATM 3 C C3 NAG . . . F 4 162.473 109.778 13.65 1 113.15 ? C3 NAG 610 A 1 HETATM 4 C C4 NAG . . . F 4 163.112 110.323 14.915 1 116.48 ? C4 NAG 610 A 1 HETATM 5 C C5 NAG . . . F 4 164.235 109.395 15.36 1 116.72 ? C5 NAG 610 A 1 HETATM 6 C C6 NAG . . . F 4 164.257 109.147 16.85 1 113.77 ? C6 NAG 610 A 1 HETATM 7 C C7 NAG . . . F 4 160.125 108.46 12.127 1 119.69 ? C7 NAG 610 A 1 HETATM 8 C C8 NAG . . . F 4 159.638 107.737 10.907 1 108.74 ? C8 NAG 610 A 1 HETATM 9 N N2 NAG . . . F 4 161.169 107.907 12.757 1 113.81 ? N2 NAG 610 A 1 HETATM 10 O O3 NAG . . . F 4 161.531 110.722 13.152 1 108.74 ? O3 NAG 610 A 1 HETATM 11 O O4 NAG . . . F 4 163.647 111.618 14.662 1 122.27 ? O4 NAG 610 A 1 HETATM 12 O O5 NAG . . . F 4 164.151 108.108 14.721 1 114.73 ? O5 NAG 610 A 1 HETATM 13 O O6 NAG . . . F 4 165.264 108.207 17.197 1 113.51 ? O6 NAG 610 A 1 HETATM 14 O O7 NAG . . . F 4 159.602 109.499 12.52 1 114.07 ? O7 NAG 610 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 144 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #