data_6QBA # _model_server_result.job_id nlpBfGgmH1bboLOZcecmAw _model_server_result.datetime_utc '2024-11-24 10:54:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 6QBA # _exptl.entry_id 6QBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QBA _cell.length_a 44.456 _cell.length_b 77.614 _cell.length_c 80.509 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 4 1_555 A SG CYS 162 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 72 A CYS 70 1_555 A SG CYS 176 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 122 A CYS 120 1_555 A SG CYS 131 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A OE2 GLU 15 A GLU 13 1_555 K ZN ZN . A ZN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 A OD1 ASP 142 A ASP 140 1_555 J ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 A OD2 ASP 142 A ASP 140 1_555 J ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc4 A NE2 HIS 172 A HIS 170 1_555 L ZN ZN . A ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc5 A OD1 ASP 177 A ASP 175 1_555 L ZN ZN . A ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc6 A OD2 ASP 177 A ASP 175 1_555 L ZN ZN . A ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 D N3 IMD . A IMD 202 1_555 K ZN ZN . A ZN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 E N3 IMD . A IMD 203 1_555 J ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? metalc ? metalc9 F N3 IMD . A IMD 204 1_555 L ZN ZN . A ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc10 G N3 IMD . A IMD 205 1_555 K ZN ZN . A ZN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 H N3 IMD . A IMD 206 1_555 L ZN ZN . A ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc12 J ZN ZN . A ZN 208 1_655 B OE1 GLU 59 B GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc13 J ZN ZN . A ZN 208 1_555 O O HOH . B HOH 204 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc14 K ZN ZN . A ZN 209 2_565 B OE1 GLU 10 B GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc15 K ZN ZN . A ZN 209 2_565 B OE2 GLU 10 B GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 228 n y N1 C5 IMD sing 229 n y N1 HN1 IMD sing 230 n n C2 N3 IMD doub 231 n y C2 H2 IMD sing 232 n n N3 C4 IMD sing 233 n y N3 HN3 IMD sing 234 n n C4 C5 IMD doub 235 n y C4 H4 IMD sing 236 n n C5 H5 IMD sing 237 n n # _atom_sites.entry_id 6QBA _atom_sites.fract_transf_matrix[1][1] 0.022494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2T1 A 1 201 201 2T1 2T1 . D 4 IMD A 1 202 301 IMD IMD . E 4 IMD A 1 203 401 IMD IMD . F 4 IMD A 1 204 501 IMD IMD . G 4 IMD A 1 205 701 IMD IMD . H 4 IMD A 1 206 801 IMD IMD . I 5 PEG A 1 207 901 PEG PEG . J 6 ZN A 1 208 1 ZN ZN . K 6 ZN A 1 209 2 ZN ZN . L 6 ZN A 1 210 3 ZN ZN . M 7 ACT B 1 101 101 ACT ACT . N 8 HOH A 1 301 218 HOH HOH . N 8 HOH A 2 302 57 HOH HOH . N 8 HOH A 3 303 99 HOH HOH . N 8 HOH A 4 304 194 HOH HOH . N 8 HOH A 5 305 56 HOH HOH . N 8 HOH A 6 306 83 HOH HOH . N 8 HOH A 7 307 161 HOH HOH . N 8 HOH A 8 308 15 HOH HOH . N 8 HOH A 9 309 61 HOH HOH . N 8 HOH A 10 310 122 HOH HOH . N 8 HOH A 11 311 34 HOH HOH . N 8 HOH A 12 312 92 HOH HOH . N 8 HOH A 13 313 126 HOH HOH . N 8 HOH A 14 314 168 HOH HOH . N 8 HOH A 15 315 22 HOH HOH . N 8 HOH A 16 316 59 HOH HOH . N 8 HOH A 17 317 41 HOH HOH . N 8 HOH A 18 318 176 HOH HOH . N 8 HOH A 19 319 19 HOH HOH . N 8 HOH A 20 320 67 HOH HOH . N 8 HOH A 21 321 184 HOH HOH . N 8 HOH A 22 322 101 HOH HOH . N 8 HOH A 23 323 133 HOH HOH . N 8 HOH A 24 324 68 HOH HOH . N 8 HOH A 25 325 3 HOH HOH . N 8 HOH A 26 326 9 HOH HOH . N 8 HOH A 27 327 217 HOH HOH . N 8 HOH A 28 328 18 HOH HOH . N 8 HOH A 29 329 222 HOH HOH . N 8 HOH A 30 330 94 HOH HOH . N 8 HOH A 31 331 170 HOH HOH . N 8 HOH A 32 332 69 HOH HOH . N 8 HOH A 33 333 112 HOH HOH . N 8 HOH A 34 334 185 HOH HOH . N 8 HOH A 35 335 64 HOH HOH . N 8 HOH A 36 336 125 HOH HOH . N 8 HOH A 37 337 141 HOH HOH . N 8 HOH A 38 338 104 HOH HOH . N 8 HOH A 39 339 216 HOH HOH . N 8 HOH A 40 340 169 HOH HOH . N 8 HOH A 41 341 38 HOH HOH . N 8 HOH A 42 342 110 HOH HOH . N 8 HOH A 43 343 33 HOH HOH . N 8 HOH A 44 344 72 HOH HOH . N 8 HOH A 45 345 210 HOH HOH . N 8 HOH A 46 346 25 HOH HOH . N 8 HOH A 47 347 4 HOH HOH . N 8 HOH A 48 348 146 HOH HOH . N 8 HOH A 49 349 45 HOH HOH . N 8 HOH A 50 350 62 HOH HOH . N 8 HOH A 51 351 12 HOH HOH . N 8 HOH A 52 352 121 HOH HOH . N 8 HOH A 53 353 172 HOH HOH . N 8 HOH A 54 354 158 HOH HOH . N 8 HOH A 55 355 16 HOH HOH . N 8 HOH A 56 356 114 HOH HOH . N 8 HOH A 57 357 111 HOH HOH . N 8 HOH A 58 358 17 HOH HOH . N 8 HOH A 59 359 151 HOH HOH . N 8 HOH A 60 360 48 HOH HOH . N 8 HOH A 61 361 7 HOH HOH . N 8 HOH A 62 362 53 HOH HOH . N 8 HOH A 63 363 54 HOH HOH . N 8 HOH A 64 364 24 HOH HOH . N 8 HOH A 65 365 5 HOH HOH . N 8 HOH A 66 366 105 HOH HOH . N 8 HOH A 67 367 21 HOH HOH . N 8 HOH A 68 368 20 HOH HOH . N 8 HOH A 69 369 91 HOH HOH . N 8 HOH A 70 370 153 HOH HOH . N 8 HOH A 71 371 134 HOH HOH . N 8 HOH A 72 372 2 HOH HOH . N 8 HOH A 73 373 116 HOH HOH . N 8 HOH A 74 374 27 HOH HOH . N 8 HOH A 75 375 55 HOH HOH . N 8 HOH A 76 376 6 HOH HOH . N 8 HOH A 77 377 49 HOH HOH . N 8 HOH A 78 378 58 HOH HOH . N 8 HOH A 79 379 162 HOH HOH . N 8 HOH A 80 380 42 HOH HOH . N 8 HOH A 81 381 35 HOH HOH . N 8 HOH A 82 382 119 HOH HOH . N 8 HOH A 83 383 188 HOH HOH . N 8 HOH A 84 384 11 HOH HOH . N 8 HOH A 85 385 154 HOH HOH . N 8 HOH A 86 386 88 HOH HOH . N 8 HOH A 87 387 31 HOH HOH . N 8 HOH A 88 388 152 HOH HOH . N 8 HOH A 89 389 96 HOH HOH . N 8 HOH A 90 390 223 HOH HOH . N 8 HOH A 91 391 8 HOH HOH . N 8 HOH A 92 392 65 HOH HOH . N 8 HOH A 93 393 84 HOH HOH . N 8 HOH A 94 394 120 HOH HOH . N 8 HOH A 95 395 28 HOH HOH . N 8 HOH A 96 396 219 HOH HOH . N 8 HOH A 97 397 196 HOH HOH . N 8 HOH A 98 398 100 HOH HOH . N 8 HOH A 99 399 36 HOH HOH . N 8 HOH A 100 400 29 HOH HOH . N 8 HOH A 101 401 106 HOH HOH . N 8 HOH A 102 402 137 HOH HOH . N 8 HOH A 103 403 157 HOH HOH . N 8 HOH A 104 404 98 HOH HOH . N 8 HOH A 105 405 128 HOH HOH . N 8 HOH A 106 406 197 HOH HOH . N 8 HOH A 107 407 148 HOH HOH . N 8 HOH A 108 408 150 HOH HOH . N 8 HOH A 109 409 136 HOH HOH . N 8 HOH A 110 410 147 HOH HOH . N 8 HOH A 111 411 178 HOH HOH . N 8 HOH A 112 412 44 HOH HOH . N 8 HOH A 113 413 10 HOH HOH . N 8 HOH A 114 414 71 HOH HOH . N 8 HOH A 115 415 224 HOH HOH . N 8 HOH A 116 416 206 HOH HOH . N 8 HOH A 117 417 97 HOH HOH . N 8 HOH A 118 418 135 HOH HOH . N 8 HOH A 119 419 142 HOH HOH . N 8 HOH A 120 420 73 HOH HOH . N 8 HOH A 121 421 139 HOH HOH . N 8 HOH A 122 422 118 HOH HOH . N 8 HOH A 123 423 138 HOH HOH . N 8 HOH A 124 424 124 HOH HOH . N 8 HOH A 125 425 149 HOH HOH . N 8 HOH A 126 426 70 HOH HOH . N 8 HOH A 127 427 159 HOH HOH . N 8 HOH A 128 428 187 HOH HOH . N 8 HOH A 129 429 195 HOH HOH . N 8 HOH A 130 430 60 HOH HOH . N 8 HOH A 131 431 189 HOH HOH . N 8 HOH A 132 432 208 HOH HOH . N 8 HOH A 133 433 95 HOH HOH . N 8 HOH A 134 434 173 HOH HOH . N 8 HOH A 135 435 123 HOH HOH . N 8 HOH A 136 436 199 HOH HOH . N 8 HOH A 137 437 198 HOH HOH . N 8 HOH A 138 438 66 HOH HOH . N 8 HOH A 139 439 174 HOH HOH . N 8 HOH A 140 440 108 HOH HOH . N 8 HOH A 141 441 145 HOH HOH . N 8 HOH A 142 442 127 HOH HOH . N 8 HOH A 143 443 204 HOH HOH . N 8 HOH A 144 444 129 HOH HOH . N 8 HOH A 145 445 115 HOH HOH . N 8 HOH A 146 446 86 HOH HOH . N 8 HOH A 147 447 63 HOH HOH . N 8 HOH A 148 448 26 HOH HOH . N 8 HOH A 149 449 156 HOH HOH . N 8 HOH A 150 450 209 HOH HOH . O 8 HOH B 1 201 93 HOH HOH . O 8 HOH B 2 202 186 HOH HOH . O 8 HOH B 3 203 182 HOH HOH . O 8 HOH B 4 204 214 HOH HOH . O 8 HOH B 5 205 43 HOH HOH . O 8 HOH B 6 206 80 HOH HOH . O 8 HOH B 7 207 132 HOH HOH . O 8 HOH B 8 208 221 HOH HOH . O 8 HOH B 9 209 171 HOH HOH . O 8 HOH B 10 210 14 HOH HOH . O 8 HOH B 11 211 79 HOH HOH . O 8 HOH B 12 212 144 HOH HOH . O 8 HOH B 13 213 47 HOH HOH . O 8 HOH B 14 214 113 HOH HOH . O 8 HOH B 15 215 190 HOH HOH . O 8 HOH B 16 216 107 HOH HOH . O 8 HOH B 17 217 163 HOH HOH . O 8 HOH B 18 218 46 HOH HOH . O 8 HOH B 19 219 201 HOH HOH . O 8 HOH B 20 220 103 HOH HOH . O 8 HOH B 21 221 76 HOH HOH . O 8 HOH B 22 222 23 HOH HOH . O 8 HOH B 23 223 39 HOH HOH . O 8 HOH B 24 224 75 HOH HOH . O 8 HOH B 25 225 78 HOH HOH . O 8 HOH B 26 226 81 HOH HOH . O 8 HOH B 27 227 202 HOH HOH . O 8 HOH B 28 228 74 HOH HOH . O 8 HOH B 29 229 183 HOH HOH . O 8 HOH B 30 230 117 HOH HOH . O 8 HOH B 31 231 167 HOH HOH . O 8 HOH B 32 232 89 HOH HOH . O 8 HOH B 33 233 13 HOH HOH . O 8 HOH B 34 234 77 HOH HOH . O 8 HOH B 35 235 82 HOH HOH . O 8 HOH B 36 236 87 HOH HOH . O 8 HOH B 37 237 1 HOH HOH . O 8 HOH B 38 238 90 HOH HOH . O 8 HOH B 39 239 191 HOH HOH . O 8 HOH B 40 240 203 HOH HOH . O 8 HOH B 41 241 220 HOH HOH . O 8 HOH B 42 242 109 HOH HOH . O 8 HOH B 43 243 102 HOH HOH . O 8 HOH B 44 244 181 HOH HOH . O 8 HOH B 45 245 52 HOH HOH . O 8 HOH B 46 246 40 HOH HOH . O 8 HOH B 47 247 215 HOH HOH . O 8 HOH B 48 248 160 HOH HOH . O 8 HOH B 49 249 85 HOH HOH . O 8 HOH B 50 250 205 HOH HOH . O 8 HOH B 51 251 50 HOH HOH . O 8 HOH B 52 252 200 HOH HOH . O 8 HOH B 53 253 179 HOH HOH . O 8 HOH B 54 254 155 HOH HOH . O 8 HOH B 55 255 175 HOH HOH . O 8 HOH B 56 256 51 HOH HOH . O 8 HOH B 57 257 37 HOH HOH . O 8 HOH B 58 258 207 HOH HOH . O 8 HOH B 59 259 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . H 4 5.692 25.224 45.835 1 92.04 ? N1 IMD 206 A 1 HETATM 2 C C2 IMD . . . H 4 6.264 25.654 44.688 1 69.39 ? C2 IMD 206 A 1 HETATM 3 N N3 IMD . . . H 4 6.747 26.905 44.886 1 54.22 ? N3 IMD 206 A 1 HETATM 4 C C4 IMD . . . H 4 6.494 27.253 46.156 1 60.04 ? C4 IMD 206 A 1 HETATM 5 C C5 IMD . . . H 4 5.815 26.203 46.758 1 94.48 ? C5 IMD 206 A 1 HETATM 6 H HN1 IMD . . . H 4 5.262 24.355 45.972 1 110.46 ? HN1 IMD 206 A 1 HETATM 7 H H2 IMD . . . H 4 6.321 25.146 43.853 1 83.28 ? H2 IMD 206 A 1 HETATM 8 H HN3 IMD . . . H 4 7.201 27.459 44.218 1 65.08 ? HN3 IMD 206 A 1 HETATM 9 H H4 IMD . . . H 4 6.744 28.098 46.583 1 72.06 ? H4 IMD 206 A 1 HETATM 10 H H5 IMD . . . H 4 5.486 26.176 47.68 1 113.39 ? H5 IMD 206 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #