data_6QBU
#
_model_server_result.job_id            HC027Q0JSs_7xb1qRpgqRw 
_model_server_result.datetime_utc      '2024-11-22 23:21:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1005}' 
#
_entry.id    6QBU 
#
_exptl.entry_id    6QBU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QBU 
_cell.length_a            50.548 
_cell.length_b            57.551 
_cell.length_c            74.594 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 A SG CYS 158 A CYS 167 1_555 A SG CYS 174 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 214 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
covale ? covale1 A OG SER 188 A SER 195 1_555 B S22 HVZ . A HVZ 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? 
metalc ? metalc1 A OE1 GLU 59 A GLU 70 1_555 F NA NA . A NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc2 A O ASN 61 A ASN 72 1_555 F NA NA . A NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A O GLN 64 A GLN 75 1_555 F NA NA . A NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc4 A OD2 ASP 66 A ASP 77 1_555 F NA NA . A NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc5 A OE2 GLU 69 A GLU 80 1_555 F NA NA . A NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc6 F NA NA . A NA 1005 1_555 G O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6QBU 
_atom_sites.fract_transf_matrix[1][1]    0.019783 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017376 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HVZ A 1 1001 1001 HVZ 011 . 
C 3 PO4 A 1 1002 2001 PO4 PO4 . 
D 3 PO4 A 1 1003 2002 PO4 PO4 . 
E 4 MPD A 1 1004 3001 MPD MPD . 
F 5 NA A 1 1005 5001 NA NA . 
G 6 HOH A 1 1101 172 HOH HOH . 
G 6 HOH A 2 1102 148 HOH HOH . 
G 6 HOH A 3 1103 144 HOH HOH . 
G 6 HOH A 4 1104 186 HOH HOH . 
G 6 HOH A 5 1105 98 HOH HOH . 
G 6 HOH A 6 1106 160 HOH HOH . 
G 6 HOH A 7 1107 29 HOH HOH . 
G 6 HOH A 8 1108 65 HOH HOH . 
G 6 HOH A 9 1109 196 HOH HOH . 
G 6 HOH A 10 1110 153 HOH HOH . 
G 6 HOH A 11 1111 155 HOH HOH . 
G 6 HOH A 12 1112 166 HOH HOH . 
G 6 HOH A 13 1113 212 HOH HOH . 
G 6 HOH A 14 1114 105 HOH HOH . 
G 6 HOH A 15 1115 189 HOH HOH . 
G 6 HOH A 16 1116 187 HOH HOH . 
G 6 HOH A 17 1117 70 HOH HOH . 
G 6 HOH A 18 1118 122 HOH HOH . 
G 6 HOH A 19 1119 54 HOH HOH . 
G 6 HOH A 20 1120 11 HOH HOH . 
G 6 HOH A 21 1121 64 HOH HOH . 
G 6 HOH A 22 1122 185 HOH HOH . 
G 6 HOH A 23 1123 92 HOH HOH . 
G 6 HOH A 24 1124 17 HOH HOH . 
G 6 HOH A 25 1125 52 HOH HOH . 
G 6 HOH A 26 1126 130 HOH HOH . 
G 6 HOH A 27 1127 72 HOH HOH . 
G 6 HOH A 28 1128 88 HOH HOH . 
G 6 HOH A 29 1129 135 HOH HOH . 
G 6 HOH A 30 1130 28 HOH HOH . 
G 6 HOH A 31 1131 174 HOH HOH . 
G 6 HOH A 32 1132 15 HOH HOH . 
G 6 HOH A 33 1133 121 HOH HOH . 
G 6 HOH A 34 1134 173 HOH HOH . 
G 6 HOH A 35 1135 162 HOH HOH . 
G 6 HOH A 36 1136 55 HOH HOH . 
G 6 HOH A 37 1137 32 HOH HOH . 
G 6 HOH A 38 1138 94 HOH HOH . 
G 6 HOH A 39 1139 89 HOH HOH . 
G 6 HOH A 40 1140 68 HOH HOH . 
G 6 HOH A 41 1141 161 HOH HOH . 
G 6 HOH A 42 1142 14 HOH HOH . 
G 6 HOH A 43 1143 19 HOH HOH . 
G 6 HOH A 44 1144 79 HOH HOH . 
G 6 HOH A 45 1145 109 HOH HOH . 
G 6 HOH A 46 1146 45 HOH HOH . 
G 6 HOH A 47 1147 26 HOH HOH . 
G 6 HOH A 48 1148 62 HOH HOH . 
G 6 HOH A 49 1149 8 HOH HOH . 
G 6 HOH A 50 1150 4 HOH HOH . 
G 6 HOH A 51 1151 33 HOH HOH . 
G 6 HOH A 52 1152 24 HOH HOH . 
G 6 HOH A 53 1153 76 HOH HOH . 
G 6 HOH A 54 1154 201 HOH HOH . 
G 6 HOH A 55 1155 5 HOH HOH . 
G 6 HOH A 56 1156 83 HOH HOH . 
G 6 HOH A 57 1157 39 HOH HOH . 
G 6 HOH A 58 1158 43 HOH HOH . 
G 6 HOH A 59 1159 56 HOH HOH . 
G 6 HOH A 60 1160 35 HOH HOH . 
G 6 HOH A 61 1161 30 HOH HOH . 
G 6 HOH A 62 1162 49 HOH HOH . 
G 6 HOH A 63 1163 131 HOH HOH . 
G 6 HOH A 64 1164 6 HOH HOH . 
G 6 HOH A 65 1165 95 HOH HOH . 
G 6 HOH A 66 1166 44 HOH HOH . 
G 6 HOH A 67 1167 58 HOH HOH . 
G 6 HOH A 68 1168 60 HOH HOH . 
G 6 HOH A 69 1169 178 HOH HOH . 
G 6 HOH A 70 1170 37 HOH HOH . 
G 6 HOH A 71 1171 10 HOH HOH . 
G 6 HOH A 72 1172 81 HOH HOH . 
G 6 HOH A 73 1173 61 HOH HOH . 
G 6 HOH A 74 1174 169 HOH HOH . 
G 6 HOH A 75 1175 132 HOH HOH . 
G 6 HOH A 76 1176 120 HOH HOH . 
G 6 HOH A 77 1177 18 HOH HOH . 
G 6 HOH A 78 1178 1 HOH HOH . 
G 6 HOH A 79 1179 179 HOH HOH . 
G 6 HOH A 80 1180 102 HOH HOH . 
G 6 HOH A 81 1181 25 HOH HOH . 
G 6 HOH A 82 1182 16 HOH HOH . 
G 6 HOH A 83 1183 27 HOH HOH . 
G 6 HOH A 84 1184 57 HOH HOH . 
G 6 HOH A 85 1185 20 HOH HOH . 
G 6 HOH A 86 1186 13 HOH HOH . 
G 6 HOH A 87 1187 171 HOH HOH . 
G 6 HOH A 88 1188 87 HOH HOH . 
G 6 HOH A 89 1189 12 HOH HOH . 
G 6 HOH A 90 1190 77 HOH HOH . 
G 6 HOH A 91 1191 41 HOH HOH . 
G 6 HOH A 92 1192 154 HOH HOH . 
G 6 HOH A 93 1193 91 HOH HOH . 
G 6 HOH A 94 1194 21 HOH HOH . 
G 6 HOH A 95 1195 7 HOH HOH . 
G 6 HOH A 96 1196 117 HOH HOH . 
G 6 HOH A 97 1197 86 HOH HOH . 
G 6 HOH A 98 1198 106 HOH HOH . 
G 6 HOH A 99 1199 2 HOH HOH . 
G 6 HOH A 100 1200 34 HOH HOH . 
G 6 HOH A 101 1201 47 HOH HOH . 
G 6 HOH A 102 1202 22 HOH HOH . 
G 6 HOH A 103 1203 67 HOH HOH . 
G 6 HOH A 104 1204 3 HOH HOH . 
G 6 HOH A 105 1205 158 HOH HOH . 
G 6 HOH A 106 1206 38 HOH HOH . 
G 6 HOH A 107 1207 74 HOH HOH . 
G 6 HOH A 108 1208 113 HOH HOH . 
G 6 HOH A 109 1209 97 HOH HOH . 
G 6 HOH A 110 1210 73 HOH HOH . 
G 6 HOH A 111 1211 40 HOH HOH . 
G 6 HOH A 112 1212 59 HOH HOH . 
G 6 HOH A 113 1213 157 HOH HOH . 
G 6 HOH A 114 1214 78 HOH HOH . 
G 6 HOH A 115 1215 165 HOH HOH . 
G 6 HOH A 116 1216 85 HOH HOH . 
G 6 HOH A 117 1217 9 HOH HOH . 
G 6 HOH A 118 1218 124 HOH HOH . 
G 6 HOH A 119 1219 82 HOH HOH . 
G 6 HOH A 120 1220 168 HOH HOH . 
G 6 HOH A 121 1221 31 HOH HOH . 
G 6 HOH A 122 1222 66 HOH HOH . 
G 6 HOH A 123 1223 181 HOH HOH . 
G 6 HOH A 124 1224 101 HOH HOH . 
G 6 HOH A 125 1225 152 HOH HOH . 
G 6 HOH A 126 1226 108 HOH HOH . 
G 6 HOH A 127 1227 137 HOH HOH . 
G 6 HOH A 128 1228 51 HOH HOH . 
G 6 HOH A 129 1229 69 HOH HOH . 
G 6 HOH A 130 1230 139 HOH HOH . 
G 6 HOH A 131 1231 134 HOH HOH . 
G 6 HOH A 132 1232 205 HOH HOH . 
G 6 HOH A 133 1233 107 HOH HOH . 
G 6 HOH A 134 1234 197 HOH HOH . 
G 6 HOH A 135 1235 125 HOH HOH . 
G 6 HOH A 136 1236 48 HOH HOH . 
G 6 HOH A 137 1237 50 HOH HOH . 
G 6 HOH A 138 1238 112 HOH HOH . 
G 6 HOH A 139 1239 118 HOH HOH . 
G 6 HOH A 140 1240 190 HOH HOH . 
G 6 HOH A 141 1241 128 HOH HOH . 
G 6 HOH A 142 1242 96 HOH HOH . 
G 6 HOH A 143 1243 133 HOH HOH . 
G 6 HOH A 144 1244 84 HOH HOH . 
G 6 HOH A 145 1245 116 HOH HOH . 
G 6 HOH A 146 1246 90 HOH HOH . 
G 6 HOH A 147 1247 53 HOH HOH . 
G 6 HOH A 148 1248 182 HOH HOH . 
G 6 HOH A 149 1249 42 HOH HOH . 
G 6 HOH A 150 1250 146 HOH HOH . 
G 6 HOH A 151 1251 194 HOH HOH . 
G 6 HOH A 152 1252 156 HOH HOH . 
G 6 HOH A 153 1253 177 HOH HOH . 
G 6 HOH A 154 1254 204 HOH HOH . 
G 6 HOH A 155 1255 93 HOH HOH . 
G 6 HOH A 156 1256 71 HOH HOH . 
G 6 HOH A 157 1257 23 HOH HOH . 
G 6 HOH A 158 1258 123 HOH HOH . 
G 6 HOH A 159 1259 184 HOH HOH . 
G 6 HOH A 160 1260 176 HOH HOH . 
G 6 HOH A 161 1261 46 HOH HOH . 
G 6 HOH A 162 1262 63 HOH HOH . 
G 6 HOH A 163 1263 149 HOH HOH . 
G 6 HOH A 164 1264 140 HOH HOH . 
G 6 HOH A 165 1265 145 HOH HOH . 
G 6 HOH A 166 1266 175 HOH HOH . 
G 6 HOH A 167 1267 203 HOH HOH . 
G 6 HOH A 168 1268 195 HOH HOH . 
G 6 HOH A 169 1269 36 HOH HOH . 
G 6 HOH A 170 1270 170 HOH HOH . 
G 6 HOH A 171 1271 75 HOH HOH . 
G 6 HOH A 172 1272 129 HOH HOH . 
G 6 HOH A 173 1273 110 HOH HOH . 
G 6 HOH A 174 1274 193 HOH HOH . 
G 6 HOH A 175 1275 136 HOH HOH . 
G 6 HOH A 176 1276 192 HOH HOH . 
G 6 HOH A 177 1277 180 HOH HOH . 
G 6 HOH A 178 1278 167 HOH HOH . 
G 6 HOH A 179 1279 159 HOH HOH . 
G 6 HOH A 180 1280 138 HOH HOH . 
G 6 HOH A 181 1281 191 HOH HOH . 
G 6 HOH A 182 1282 202 HOH HOH . 
G 6 HOH A 183 1283 211 HOH HOH . 
G 6 HOH A 184 1284 147 HOH HOH . 
G 6 HOH A 185 1285 150 HOH HOH . 
G 6 HOH A 186 1286 151 HOH HOH . 
G 6 HOH A 187 1287 200 HOH HOH . 
G 6 HOH A 188 1288 208 HOH HOH . 
G 6 HOH A 189 1289 114 HOH HOH . 
G 6 HOH A 190 1290 199 HOH HOH . 
G 6 HOH A 191 1291 143 HOH HOH . 
G 6 HOH A 192 1292 163 HOH HOH . 
G 6 HOH A 193 1293 99 HOH HOH . 
G 6 HOH A 194 1294 127 HOH HOH . 
G 6 HOH A 195 1295 119 HOH HOH . 
G 6 HOH A 196 1296 103 HOH HOH . 
G 6 HOH A 197 1297 183 HOH HOH . 
G 6 HOH A 198 1298 80 HOH HOH . 
G 6 HOH A 199 1299 141 HOH HOH . 
G 6 HOH A 200 1300 188 HOH HOH . 
G 6 HOH A 201 1301 206 HOH HOH . 
G 6 HOH A 202 1302 198 HOH HOH . 
G 6 HOH A 203 1303 111 HOH HOH . 
G 6 HOH A 204 1304 142 HOH HOH . 
G 6 HOH A 205 1305 209 HOH HOH . 
G 6 HOH A 206 1306 207 HOH HOH . 
G 6 HOH A 207 1307 100 HOH HOH . 
G 6 HOH A 208 1308 126 HOH HOH . 
G 6 HOH A 209 1309 104 HOH HOH . 
G 6 HOH A 210 1310 210 HOH HOH . 
G 6 HOH A 211 1311 115 HOH HOH . 
G 6 HOH A 212 1312 164 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               5.036 
_atom_site.Cartn_y               -8.671 
_atom_site.Cartn_z               7.52 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.36 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1005 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#