data_6QC9
#
_model_server_result.job_id            VyNtTDN0pbXglgjclvVRuA 
_model_server_result.datetime_utc      '2025-03-06 10:07:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qc9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DB","auth_seq_id":401}' 
#
_entry.id    6QC9 
#
_exptl.entry_id    6QC9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          49 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    45-meric 
_pdbx_struct_assembly.oligomeric_count      45 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      49 
_struct_asym.id                             DB 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 293 n n 
PA O2A NDP sing 294 n n 
PA O5B NDP sing 295 n n 
PA O3 NDP sing 296 n n 
O2A HOA2 NDP sing 297 n n 
O5B C5B NDP sing 298 n n 
C5B C4B NDP sing 299 n n 
C5B H51A NDP sing 300 n n 
C5B H52A NDP sing 301 n n 
C4B O4B NDP sing 302 n n 
C4B C3B NDP sing 303 n n 
C4B H4B NDP sing 304 n n 
O4B C1B NDP sing 305 n n 
C3B O3B NDP sing 306 n n 
C3B C2B NDP sing 307 n n 
C3B H3B NDP sing 308 n n 
O3B HO3A NDP sing 309 n n 
C2B O2B NDP sing 310 n n 
C2B C1B NDP sing 311 n n 
C2B H2B NDP sing 312 n n 
O2B P2B NDP sing 313 n n 
C1B N9A NDP sing 314 n n 
C1B H1B NDP sing 315 n n 
N9A C8A NDP sing 316 n y 
N9A C4A NDP sing 317 n y 
C8A N7A NDP doub 318 n y 
C8A H8A NDP sing 319 n n 
N7A C5A NDP sing 320 n y 
C5A C6A NDP sing 321 n y 
C5A C4A NDP doub 322 n y 
C6A N6A NDP sing 323 n n 
C6A N1A NDP doub 324 n y 
N6A H61A NDP sing 325 n n 
N6A H62A NDP sing 326 n n 
N1A C2A NDP sing 327 n y 
C2A N3A NDP doub 328 n y 
C2A H2A NDP sing 329 n n 
N3A C4A NDP sing 330 n y 
O3 PN NDP sing 331 n n 
PN O1N NDP doub 332 n n 
PN O2N NDP sing 333 n n 
PN O5D NDP sing 334 n n 
O2N H21N NDP sing 335 n n 
O5D C5D NDP sing 336 n n 
C5D C4D NDP sing 337 n n 
C5D H51N NDP sing 338 n n 
C5D H52N NDP sing 339 n n 
C4D O4D NDP sing 340 n n 
C4D C3D NDP sing 341 n n 
C4D H4D NDP sing 342 n n 
O4D C1D NDP sing 343 n n 
C3D O3D NDP sing 344 n n 
C3D C2D NDP sing 345 n n 
C3D H3D NDP sing 346 n n 
O3D HO3N NDP sing 347 n n 
C2D O2D NDP sing 348 n n 
C2D C1D NDP sing 349 n n 
C2D H2D NDP sing 350 n n 
O2D HO2N NDP sing 351 n n 
C1D N1N NDP sing 352 n n 
C1D H1D NDP sing 353 n n 
N1N C2N NDP sing 354 n n 
N1N C6N NDP sing 355 n n 
C2N C3N NDP doub 356 n n 
C2N H2N NDP sing 357 n n 
C3N C7N NDP sing 358 n n 
C3N C4N NDP sing 359 n n 
C7N O7N NDP doub 360 n n 
C7N N7N NDP sing 361 n n 
N7N H71N NDP sing 362 n n 
N7N H72N NDP sing 363 n n 
C4N C5N NDP sing 364 n n 
C4N H41N NDP sing 365 n n 
C4N H42N NDP sing 366 n n 
C5N C6N NDP doub 367 n n 
C5N H5N NDP sing 368 n n 
C6N H6N NDP sing 369 n n 
P2B O1X NDP doub 370 n n 
P2B O2X NDP sing 371 n n 
P2B O3X NDP sing 372 n n 
O2X HOP2 NDP sing 373 n n 
O3X HOP3 NDP sing 374 n n 
#
_atom_sites.entry_id                     6QC9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
TA 45 SF4 V1 1 500 500 SF4 SF4 . 
UA 46 FMN V1 1 501 501 FMN FMN . 
VA 47 FES V2 1 300 300 FES FES . 
WA 45 SF4 S1 1 801 801 SF4 SF4 . 
XA 45 SF4 S1 1 802 802 SF4 SF4 . 
YA 47 FES S1 1 803 803 FES FES . 
ZA 45 SF4 S7 1 300 300 SF4 SF4 . 
AB 45 SF4 S8 1 201 502 SF4 SF4 . 
BB 45 SF4 S8 1 202 503 SF4 SF4 . 
CB 48 ZN S6 1 300 300 ZN ZN . 
DB 49 NDP A9 1 401 401 NDP NDP . 
EB 50 ZMP A6 1 201 101 ZMP ZMP . 
FB 50 ZMP AB 1 101 101 ZMP ZMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . DB 49 311.741 390.539 355.283 1 95 ? PA NDP 401 A9 1 
HETATM 2 O O1A NDP . . . DB 49 310.977 390.206 354.065 1 95 ? O1A NDP 401 A9 1 
HETATM 3 O O2A NDP . . . DB 49 311.556 389.425 356.292 1 95 ? O2A NDP 401 A9 1 
HETATM 4 O O5B NDP . . . DB 49 311.319 391.918 355.982 1 95 ? O5B NDP 401 A9 1 
HETATM 5 C C5B NDP . . . DB 49 310.234 392.694 355.432 1 95 ? C5B NDP 401 A9 1 
HETATM 6 C C4B NDP . . . DB 49 309.136 392.773 356.46 1 95 ? C4B NDP 401 A9 1 
HETATM 7 O O4B NDP . . . DB 49 308.015 393.501 355.908 1 95 ? O4B NDP 401 A9 1 
HETATM 8 C C3B NDP . . . DB 49 308.563 391.428 356.891 1 95 ? C3B NDP 401 A9 1 
HETATM 9 O O3B NDP . . . DB 49 307.871 391.55 358.129 1 95 ? O3B NDP 401 A9 1 
HETATM 10 C C2B NDP . . . DB 49 307.596 391.199 355.739 1 95 ? C2B NDP 401 A9 1 
HETATM 11 O O2B NDP . . . DB 49 306.639 390.144 355.976 1 95 ? O2B NDP 401 A9 1 
HETATM 12 C C1B NDP . . . DB 49 306.984 392.591 355.58 1 95 ? C1B NDP 401 A9 1 
HETATM 13 N N9A NDP . . . DB 49 306.534 392.869 354.228 1 95 ? N9A NDP 401 A9 1 
HETATM 14 C C8A NDP . . . DB 49 307.29 392.841 353.087 1 95 ? C8A NDP 401 A9 1 
HETATM 15 N N7A NDP . . . DB 49 306.611 393.062 351.987 1 95 ? N7A NDP 401 A9 1 
HETATM 16 C C5A NDP . . . DB 49 305.312 393.252 352.439 1 95 ? C5A NDP 401 A9 1 
HETATM 17 C C6A NDP . . . DB 49 304.101 393.504 351.765 1 95 ? C6A NDP 401 A9 1 
HETATM 18 N N6A NDP . . . DB 49 303.997 393.628 350.442 1 95 ? N6A NDP 401 A9 1 
HETATM 19 N N1A NDP . . . DB 49 302.984 393.619 352.514 1 95 ? N1A NDP 401 A9 1 
HETATM 20 C C2A NDP . . . DB 49 303.079 393.494 353.84 1 95 ? C2A NDP 401 A9 1 
HETATM 21 N N3A NDP . . . DB 49 304.162 393.257 354.583 1 95 ? N3A NDP 401 A9 1 
HETATM 22 C C4A NDP . . . DB 49 305.252 393.142 353.815 1 95 ? C4A NDP 401 A9 1 
HETATM 23 O O3 NDP . . . DB 49 313.295 390.652 354.955 1 95 ? O3 NDP 401 A9 1 
HETATM 24 P PN NDP . . . DB 49 314.54 390.929 355.909 1 95 ? PN NDP 401 A9 1 
HETATM 25 O O1N NDP . . . DB 49 314.131 390.747 357.316 1 95 ? O1N NDP 401 A9 1 
HETATM 26 O O2N NDP . . . DB 49 315.634 389.941 355.557 1 95 ? O2N NDP 401 A9 1 
HETATM 27 O O5D NDP . . . DB 49 315.091 392.387 355.616 1 95 ? O5D NDP 401 A9 1 
HETATM 28 C C5D NDP . . . DB 49 314.523 393.586 356.175 1 95 ? C5D NDP 401 A9 1 
HETATM 29 C C4D NDP . . . DB 49 314.896 394.767 355.315 1 95 ? C4D NDP 401 A9 1 
HETATM 30 O O4D NDP . . . DB 49 316.322 394.992 355.388 1 95 ? O4D NDP 401 A9 1 
HETATM 31 C C3D NDP . . . DB 49 314.545 394.632 353.828 1 95 ? C3D NDP 401 A9 1 
HETATM 32 O O3D NDP . . . DB 49 313.834 395.769 353.352 1 95 ? O3D NDP 401 A9 1 
HETATM 33 C C2D NDP . . . DB 49 315.909 394.475 353.148 1 95 ? C2D NDP 401 A9 1 
HETATM 34 O O2D NDP . . . DB 49 315.925 395.053 351.849 1 95 ? O2D NDP 401 A9 1 
HETATM 35 C C1D NDP . . . DB 49 316.813 395.258 354.09 1 95 ? C1D NDP 401 A9 1 
HETATM 36 N N1N NDP . . . DB 49 318.215 394.863 354.041 1 95 ? N1N NDP 401 A9 1 
HETATM 37 C C2N NDP . . . DB 49 318.565 393.537 353.999 1 95 ? C2N NDP 401 A9 1 
HETATM 38 C C3N NDP . . . DB 49 319.843 393.114 353.952 1 95 ? C3N NDP 401 A9 1 
HETATM 39 C C7N NDP . . . DB 49 320.081 391.658 353.896 1 95 ? C7N NDP 401 A9 1 
HETATM 40 O O7N NDP . . . DB 49 319.117 390.882 353.938 1 95 ? O7N NDP 401 A9 1 
HETATM 41 N N7N NDP . . . DB 49 321.336 391.236 353.798 1 95 ? N7N NDP 401 A9 1 
HETATM 42 C C4N NDP . . . DB 49 320.968 394.091 353.95 1 95 ? C4N NDP 401 A9 1 
HETATM 43 C C5N NDP . . . DB 49 320.479 395.492 353.982 1 95 ? C5N NDP 401 A9 1 
HETATM 44 C C6N NDP . . . DB 49 319.198 395.803 354.026 1 95 ? C6N NDP 401 A9 1 
HETATM 45 P P2B NDP . . . DB 49 305.219 390.176 356.778 1 95 ? P2B NDP 401 A9 1 
HETATM 46 O O1X NDP . . . DB 49 304.811 388.779 357.071 1 95 ? O1X NDP 401 A9 1 
HETATM 47 O O2X NDP . . . DB 49 305.435 390.999 358.047 1 95 ? O2X NDP 401 A9 1 
HETATM 48 O O3X NDP . . . DB 49 304.2 390.896 355.889 1 95 ? O3X NDP 401 A9 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#