data_6QCH
#
_model_server_result.job_id            B5pjtdHt_SX5cY2xq7fALg 
_model_server_result.datetime_utc      '2024-11-28 10:20:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qch 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":410}' 
#
_entry.id    6QCH 
#
_exptl.entry_id    6QCH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              287.244 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            cyanidin 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6QCH 
_cell.length_a            91.387 
_cell.length_b            91.387 
_cell.length_c            143.806 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QCH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,W 1 1 
B,M,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc2 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc3 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc4 B SG CYS 135 B CYS 141 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc5 B SG CYS 138 B CYS 144 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc6 B SG CYS 160 B CYS 166 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc7 B SG CYS 171 B CYS 177 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
#
_chem_comp.formula           'C15 H11 O6 1' 
_chem_comp.formula_weight    287.244 
_chem_comp.id                HWB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              cyanidin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O09 C08 HWB sing 223 n n 
C08 C07 HWB doub 224 n y 
C08 C10 HWB sing 225 n y 
C07 C06 HWB sing 226 n y 
O05 C04 HWB sing 227 n n 
O20 C19 HWB sing 228 n n 
C21 C19 HWB doub 229 n y 
C21 C14 HWB sing 230 n y 
C10 C14 HWB sing 231 n n 
C10 O11 HWB doub 232 n y 
C06 C04 HWB doub 233 n y 
C06 C12 HWB sing 234 n y 
C19 C17 HWB sing 235 n y 
C04 C03 HWB sing 236 n y 
C14 C15 HWB doub 237 n y 
O11 C12 HWB sing 238 n y 
C17 O18 HWB sing 239 n n 
C17 C16 HWB doub 240 n y 
C12 C13 HWB doub 241 n y 
C15 C16 HWB sing 242 n y 
C03 C02 HWB doub 243 n y 
C13 C02 HWB sing 244 n y 
C02 O01 HWB sing 245 n n 
O01 H1 HWB sing 246 n n 
C03 H2 HWB sing 247 n n 
O05 H3 HWB sing 248 n n 
C07 H4 HWB sing 249 n n 
O09 H5 HWB sing 250 n n 
C13 H6 HWB sing 251 n n 
C15 H7 HWB sing 252 n n 
C16 H8 HWB sing 253 n n 
O18 H9 HWB sing 254 n n 
O20 H10 HWB sing 255 n n 
C21 H11 HWB sing 256 n n 
#
_atom_sites.entry_id                     6QCH 
_atom_sites.fract_transf_matrix[1][1]    0.010942 
_atom_sites.fract_transf_matrix[1][2]    0.006318 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 401 500 AR6 AR6 . 
D 3 ZN A 1 402 501 ZN ZN . 
E 4 EDO A 1 403 601 EDO EDO . 
F 4 EDO A 1 404 701 EDO EDO . 
G 4 EDO A 1 405 601 EDO EDO . 
H 5 SO4 A 1 406 4 SO4 SO4 . 
I 5 SO4 A 1 407 6 SO4 SO4 . 
J 5 SO4 A 1 408 8 SO4 SO4 . 
K 5 SO4 A 1 409 9 SO4 SO4 . 
L 6 HWB A 1 410 1 HWB CYA . 
M 2 AR6 B 1 401 500 AR6 AR6 . 
N 3 ZN B 1 402 501 ZN ZN . 
O 4 EDO B 1 403 701 EDO EDO . 
P 5 SO4 B 1 404 1 SO4 SO4 . 
Q 5 SO4 B 1 405 3 SO4 SO4 . 
R 5 SO4 B 1 406 5 SO4 SO4 . 
S 5 SO4 B 1 407 7 SO4 SO4 . 
T 5 SO4 B 1 408 10 SO4 SO4 . 
U 5 SO4 B 1 409 11 SO4 SO4 . 
V 6 HWB B 1 410 2 HWB CYA . 
W 7 HOH A 1 501 94 HOH HOH . 
W 7 HOH A 2 502 57 HOH HOH . 
W 7 HOH A 3 503 19 HOH HOH . 
W 7 HOH A 4 504 95 HOH HOH . 
W 7 HOH A 5 505 1 HOH HOH . 
W 7 HOH A 6 506 7 HOH HOH . 
W 7 HOH A 7 507 33 HOH HOH . 
W 7 HOH A 8 508 102 HOH HOH . 
W 7 HOH A 9 509 85 HOH HOH . 
W 7 HOH A 10 510 103 HOH HOH . 
W 7 HOH A 11 511 55 HOH HOH . 
W 7 HOH A 12 512 41 HOH HOH . 
W 7 HOH A 13 513 81 HOH HOH . 
W 7 HOH A 14 514 49 HOH HOH . 
W 7 HOH A 15 515 18 HOH HOH . 
W 7 HOH A 16 516 2 HOH HOH . 
W 7 HOH A 17 517 69 HOH HOH . 
W 7 HOH A 18 518 36 HOH HOH . 
W 7 HOH A 19 519 96 HOH HOH . 
W 7 HOH A 20 520 14 HOH HOH . 
W 7 HOH A 21 521 108 HOH HOH . 
W 7 HOH A 22 522 116 HOH HOH . 
W 7 HOH A 23 523 66 HOH HOH . 
W 7 HOH A 24 524 16 HOH HOH . 
W 7 HOH A 25 525 56 HOH HOH . 
W 7 HOH A 26 526 46 HOH HOH . 
W 7 HOH A 27 527 100 HOH HOH . 
W 7 HOH A 28 528 13 HOH HOH . 
W 7 HOH A 29 529 48 HOH HOH . 
W 7 HOH A 30 530 47 HOH HOH . 
W 7 HOH A 31 531 26 HOH HOH . 
W 7 HOH A 32 532 25 HOH HOH . 
W 7 HOH A 33 533 45 HOH HOH . 
W 7 HOH A 34 534 32 HOH HOH . 
W 7 HOH A 35 535 15 HOH HOH . 
W 7 HOH A 36 536 9 HOH HOH . 
W 7 HOH A 37 537 11 HOH HOH . 
W 7 HOH A 38 538 62 HOH HOH . 
W 7 HOH A 39 539 74 HOH HOH . 
W 7 HOH A 40 540 22 HOH HOH . 
W 7 HOH A 41 541 37 HOH HOH . 
W 7 HOH A 42 542 44 HOH HOH . 
W 7 HOH A 43 543 59 HOH HOH . 
W 7 HOH A 44 544 76 HOH HOH . 
W 7 HOH A 45 545 107 HOH HOH . 
W 7 HOH A 46 546 89 HOH HOH . 
W 7 HOH A 47 547 80 HOH HOH . 
W 7 HOH A 48 548 73 HOH HOH . 
W 7 HOH A 49 549 5 HOH HOH . 
W 7 HOH A 50 550 117 HOH HOH . 
W 7 HOH A 51 551 61 HOH HOH . 
W 7 HOH A 52 552 88 HOH HOH . 
W 7 HOH A 53 553 51 HOH HOH . 
W 7 HOH A 54 554 31 HOH HOH . 
W 7 HOH A 55 555 71 HOH HOH . 
W 7 HOH A 56 556 109 HOH HOH . 
W 7 HOH A 57 557 97 HOH HOH . 
W 7 HOH A 58 558 38 HOH HOH . 
W 7 HOH A 59 559 77 HOH HOH . 
W 7 HOH A 60 560 60 HOH HOH . 
W 7 HOH A 61 561 113 HOH HOH . 
W 7 HOH A 62 562 54 HOH HOH . 
W 7 HOH A 63 563 65 HOH HOH . 
W 7 HOH A 64 564 53 HOH HOH . 
W 7 HOH A 65 565 72 HOH HOH . 
X 7 HOH B 1 501 58 HOH HOH . 
X 7 HOH B 2 502 83 HOH HOH . 
X 7 HOH B 3 503 3 HOH HOH . 
X 7 HOH B 4 504 52 HOH HOH . 
X 7 HOH B 5 505 93 HOH HOH . 
X 7 HOH B 6 506 6 HOH HOH . 
X 7 HOH B 7 507 27 HOH HOH . 
X 7 HOH B 8 508 70 HOH HOH . 
X 7 HOH B 9 509 114 HOH HOH . 
X 7 HOH B 10 510 42 HOH HOH . 
X 7 HOH B 11 511 92 HOH HOH . 
X 7 HOH B 12 512 104 HOH HOH . 
X 7 HOH B 13 513 43 HOH HOH . 
X 7 HOH B 14 514 24 HOH HOH . 
X 7 HOH B 15 515 75 HOH HOH . 
X 7 HOH B 16 516 84 HOH HOH . 
X 7 HOH B 17 517 79 HOH HOH . 
X 7 HOH B 18 518 78 HOH HOH . 
X 7 HOH B 19 519 4 HOH HOH . 
X 7 HOH B 20 520 28 HOH HOH . 
X 7 HOH B 21 521 111 HOH HOH . 
X 7 HOH B 22 522 10 HOH HOH . 
X 7 HOH B 23 523 101 HOH HOH . 
X 7 HOH B 24 524 12 HOH HOH . 
X 7 HOH B 25 525 50 HOH HOH . 
X 7 HOH B 26 526 68 HOH HOH . 
X 7 HOH B 27 527 35 HOH HOH . 
X 7 HOH B 28 528 99 HOH HOH . 
X 7 HOH B 29 529 39 HOH HOH . 
X 7 HOH B 30 530 40 HOH HOH . 
X 7 HOH B 31 531 17 HOH HOH . 
X 7 HOH B 32 532 8 HOH HOH . 
X 7 HOH B 33 533 20 HOH HOH . 
X 7 HOH B 34 534 82 HOH HOH . 
X 7 HOH B 35 535 30 HOH HOH . 
X 7 HOH B 36 536 112 HOH HOH . 
X 7 HOH B 37 537 63 HOH HOH . 
X 7 HOH B 38 538 67 HOH HOH . 
X 7 HOH B 39 539 23 HOH HOH . 
X 7 HOH B 40 540 105 HOH HOH . 
X 7 HOH B 41 541 90 HOH HOH . 
X 7 HOH B 42 542 64 HOH HOH . 
X 7 HOH B 43 543 91 HOH HOH . 
X 7 HOH B 44 544 115 HOH HOH . 
X 7 HOH B 45 545 29 HOH HOH . 
X 7 HOH B 46 546 34 HOH HOH . 
X 7 HOH B 47 547 86 HOH HOH . 
X 7 HOH B 48 548 98 HOH HOH . 
X 7 HOH B 49 549 87 HOH HOH . 
X 7 HOH B 50 550 106 HOH HOH . 
X 7 HOH B 51 551 21 HOH HOH . 
X 7 HOH B 52 552 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 HWB . . . L 6 -26.706 30.47 22.096 1 117.82 ? O01 HWB 410 A 1 
HETATM 2 C C02 HWB . . . L 6 -25.913 29.989 21.043 1 112.69 ? C02 HWB 410 A 1 
HETATM 3 C C03 HWB . . . L 6 -25.23 30.851 20.156 1 110.41 ? C03 HWB 410 A 1 
HETATM 4 C C04 HWB . . . L 6 -24.45 30.336 19.106 1 108.36 ? C04 HWB 410 A 1 
HETATM 5 O O05 HWB . . . L 6 -23.796 31.253 18.26 1 92.4 ? O05 HWB 410 A 1 
HETATM 6 C C06 HWB . . . L 6 -24.35 28.896 18.957 1 104.69 ? C06 HWB 410 A 1 
HETATM 7 C C07 HWB . . . L 6 -23.58 28.2 17.918 1 88.08 ? C07 HWB 410 A 1 
HETATM 8 C C08 HWB . . . L 6 -23.575 26.746 17.893 1 84.81 ? C08 HWB 410 A 1 
HETATM 9 O O09 HWB . . . L 6 -22.841 26.095 16.898 1 78 ? O09 HWB 410 A 1 
HETATM 10 C C10 HWB . . . L 6 -24.31 26.063 18.887 1 70.55 ? C10 HWB 410 A 1 
HETATM 11 O O11 HWB . . . L 6 -24.982 26.758 19.76 1 89.24 ? O11 HWB 410 A 1 
HETATM 12 C C12 HWB . . . L 6 -25.023 28.09 19.838 1 101.73 ? C12 HWB 410 A 1 
HETATM 13 C C13 HWB . . . L 6 -25.821 28.621 20.892 1 101.42 ? C13 HWB 410 A 1 
HETATM 14 C C14 HWB . . . L 6 -24.534 24.563 19.126 1 47.56 ? C14 HWB 410 A 1 
HETATM 15 C C15 HWB . . . L 6 -25.686 24.294 19.849 1 42.94 ? C15 HWB 410 A 1 
HETATM 16 C C16 HWB . . . L 6 -26.107 23.023 20.231 1 37.97 ? C16 HWB 410 A 1 
HETATM 17 C C17 HWB . . . L 6 -25.33 21.968 19.807 1 39.69 ? C17 HWB 410 A 1 
HETATM 18 O O18 HWB . . . L 6 -25.797 20.722 20.114 1 38.99 ? O18 HWB 410 A 1 
HETATM 19 C C19 HWB . . . L 6 -24.207 22.172 18.99 1 43.5 ? C19 HWB 410 A 1 
HETATM 20 O O20 HWB . . . L 6 -23.481 21.047 18.564 1 47.14 ? O20 HWB 410 A 1 
HETATM 21 C C21 HWB . . . L 6 -23.785 23.467 18.688 1 44.72 ? C21 HWB 410 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#