data_6QCJ # _model_server_result.job_id qqhTy3wwVE_nAruDsJZnYQ _model_server_result.datetime_utc '2024-11-07 13:37:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6QCJ # _exptl.entry_id 6QCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6QCJ _cell.length_a 91.917 _cell.length_b 91.917 _cell.length_c 144.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 145 n n C1 C2 EDO sing 146 n n C1 H11 EDO sing 147 n n C1 H12 EDO sing 148 n n O1 HO1 EDO sing 149 n n C2 O2 EDO sing 150 n n C2 H21 EDO sing 151 n n C2 H22 EDO sing 152 n n O2 HO2 EDO sing 153 n n # _atom_sites.entry_id 6QCJ _atom_sites.fract_transf_matrix[1][1] 0.010879 _atom_sites.fract_transf_matrix[1][2] 0.006281 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR6 A 1 401 401 AR6 AR6 . D 3 ZN A 1 402 402 ZN ZN . E 4 EDO A 1 403 403 EDO EDO . F 5 SO4 A 1 404 404 SO4 SO4 . G 5 SO4 A 1 405 405 SO4 SO4 . H 5 SO4 A 1 406 406 SO4 SO4 . I 6 XEG A 1 407 407 XEG XEG . J 2 AR6 B 1 401 401 AR6 AR6 . K 3 ZN B 1 402 402 ZN ZN . L 5 SO4 B 1 403 403 SO4 SO4 . M 5 SO4 B 1 404 404 SO4 SO4 . N 5 SO4 B 1 405 405 SO4 SO4 . O 5 SO4 B 1 406 406 SO4 SO4 . P 6 XEG B 1 407 407 XEG XEG . Q 7 HOH A 1 501 501 HOH HOH . Q 7 HOH A 2 502 502 HOH HOH . Q 7 HOH A 3 503 503 HOH HOH . Q 7 HOH A 4 504 504 HOH HOH . Q 7 HOH A 5 505 508 HOH HOH . Q 7 HOH A 6 506 507 HOH HOH . Q 7 HOH A 7 507 506 HOH HOH . Q 7 HOH A 8 508 514 HOH HOH . Q 7 HOH A 9 509 509 HOH HOH . Q 7 HOH A 10 510 510 HOH HOH . Q 7 HOH A 11 511 511 HOH HOH . Q 7 HOH A 12 512 512 HOH HOH . Q 7 HOH A 13 513 516 HOH HOH . Q 7 HOH A 14 514 513 HOH HOH . Q 7 HOH A 15 515 515 HOH HOH . Q 7 HOH A 16 516 519 HOH HOH . Q 7 HOH A 17 517 518 HOH HOH . Q 7 HOH A 18 518 517 HOH HOH . Q 7 HOH A 19 519 520 HOH HOH . Q 7 HOH A 20 520 522 HOH HOH . Q 7 HOH A 21 521 524 HOH HOH . Q 7 HOH A 22 522 525 HOH HOH . Q 7 HOH A 23 523 523 HOH HOH . Q 7 HOH A 24 524 527 HOH HOH . Q 7 HOH A 25 525 521 HOH HOH . Q 7 HOH A 26 526 526 HOH HOH . Q 7 HOH A 27 527 528 HOH HOH . Q 7 HOH A 28 528 530 HOH HOH . Q 7 HOH A 29 529 529 HOH HOH . Q 7 HOH A 30 530 533 HOH HOH . Q 7 HOH A 31 531 531 HOH HOH . Q 7 HOH A 32 532 532 HOH HOH . Q 7 HOH A 33 533 536 HOH HOH . Q 7 HOH A 34 534 534 HOH HOH . Q 7 HOH A 35 535 540 HOH HOH . Q 7 HOH A 36 536 538 HOH HOH . Q 7 HOH A 37 537 539 HOH HOH . Q 7 HOH A 38 538 537 HOH HOH . Q 7 HOH A 39 539 535 HOH HOH . Q 7 HOH A 40 540 541 HOH HOH . Q 7 HOH A 41 541 543 HOH HOH . Q 7 HOH A 42 542 544 HOH HOH . Q 7 HOH A 43 543 545 HOH HOH . Q 7 HOH A 44 544 542 HOH HOH . Q 7 HOH A 45 545 546 HOH HOH . Q 7 HOH A 46 546 550 HOH HOH . Q 7 HOH A 47 547 547 HOH HOH . Q 7 HOH A 48 548 548 HOH HOH . Q 7 HOH A 49 549 549 HOH HOH . Q 7 HOH A 50 550 551 HOH HOH . Q 7 HOH A 51 551 555 HOH HOH . Q 7 HOH A 52 552 553 HOH HOH . Q 7 HOH A 53 553 557 HOH HOH . Q 7 HOH A 54 554 558 HOH HOH . Q 7 HOH A 55 555 554 HOH HOH . Q 7 HOH A 56 556 556 HOH HOH . Q 7 HOH A 57 557 552 HOH HOH . Q 7 HOH A 58 558 559 HOH HOH . Q 7 HOH A 59 559 562 HOH HOH . Q 7 HOH A 60 560 560 HOH HOH . Q 7 HOH A 61 561 566 HOH HOH . Q 7 HOH A 62 562 563 HOH HOH . Q 7 HOH A 63 563 568 HOH HOH . Q 7 HOH A 64 564 567 HOH HOH . Q 7 HOH A 65 565 561 HOH HOH . Q 7 HOH A 66 566 565 HOH HOH . Q 7 HOH A 67 567 564 HOH HOH . Q 7 HOH A 68 568 570 HOH HOH . Q 7 HOH A 69 569 569 HOH HOH . Q 7 HOH A 70 570 573 HOH HOH . Q 7 HOH A 71 571 571 HOH HOH . Q 7 HOH A 72 572 574 HOH HOH . Q 7 HOH A 73 573 572 HOH HOH . Q 7 HOH A 74 574 575 HOH HOH . Q 7 HOH A 75 575 576 HOH HOH . Q 7 HOH A 76 576 577 HOH HOH . Q 7 HOH A 77 577 505 HOH HOH . Q 7 HOH A 78 578 579 HOH HOH . Q 7 HOH A 79 579 580 HOH HOH . Q 7 HOH A 80 580 578 HOH HOH . Q 7 HOH A 81 581 582 HOH HOH . Q 7 HOH A 82 582 581 HOH HOH . Q 7 HOH A 83 583 583 HOH HOH . Q 7 HOH A 84 584 584 HOH HOH . Q 7 HOH A 85 585 585 HOH HOH . Q 7 HOH A 86 586 586 HOH HOH . Q 7 HOH A 87 587 587 HOH HOH . Q 7 HOH A 88 588 588 HOH HOH . Q 7 HOH A 89 589 589 HOH HOH . R 7 HOH B 1 501 502 HOH HOH . R 7 HOH B 2 502 501 HOH HOH . R 7 HOH B 3 503 504 HOH HOH . R 7 HOH B 4 504 503 HOH HOH . R 7 HOH B 5 505 505 HOH HOH . R 7 HOH B 6 506 507 HOH HOH . R 7 HOH B 7 507 510 HOH HOH . R 7 HOH B 8 508 506 HOH HOH . R 7 HOH B 9 509 508 HOH HOH . R 7 HOH B 10 510 509 HOH HOH . R 7 HOH B 11 511 511 HOH HOH . R 7 HOH B 12 512 513 HOH HOH . R 7 HOH B 13 513 515 HOH HOH . R 7 HOH B 14 514 512 HOH HOH . R 7 HOH B 15 515 514 HOH HOH . R 7 HOH B 16 516 517 HOH HOH . R 7 HOH B 17 517 519 HOH HOH . R 7 HOH B 18 518 518 HOH HOH . R 7 HOH B 19 519 516 HOH HOH . R 7 HOH B 20 520 520 HOH HOH . R 7 HOH B 21 521 590 HOH HOH . R 7 HOH B 22 522 526 HOH HOH . R 7 HOH B 23 523 521 HOH HOH . R 7 HOH B 24 524 522 HOH HOH . R 7 HOH B 25 525 523 HOH HOH . R 7 HOH B 26 526 529 HOH HOH . R 7 HOH B 27 527 524 HOH HOH . R 7 HOH B 28 528 527 HOH HOH . R 7 HOH B 29 529 525 HOH HOH . R 7 HOH B 30 530 531 HOH HOH . R 7 HOH B 31 531 530 HOH HOH . R 7 HOH B 32 532 528 HOH HOH . R 7 HOH B 33 533 532 HOH HOH . R 7 HOH B 34 534 533 HOH HOH . R 7 HOH B 35 535 536 HOH HOH . R 7 HOH B 36 536 534 HOH HOH . R 7 HOH B 37 537 537 HOH HOH . R 7 HOH B 38 538 535 HOH HOH . R 7 HOH B 39 539 538 HOH HOH . R 7 HOH B 40 540 539 HOH HOH . R 7 HOH B 41 541 540 HOH HOH . R 7 HOH B 42 542 541 HOH HOH . R 7 HOH B 43 543 554 HOH HOH . R 7 HOH B 44 544 552 HOH HOH . R 7 HOH B 45 545 543 HOH HOH . R 7 HOH B 46 546 545 HOH HOH . R 7 HOH B 47 547 549 HOH HOH . R 7 HOH B 48 548 542 HOH HOH . R 7 HOH B 49 549 546 HOH HOH . R 7 HOH B 50 550 547 HOH HOH . R 7 HOH B 51 551 544 HOH HOH . R 7 HOH B 52 552 551 HOH HOH . R 7 HOH B 53 553 550 HOH HOH . R 7 HOH B 54 554 548 HOH HOH . R 7 HOH B 55 555 553 HOH HOH . R 7 HOH B 56 556 555 HOH HOH . R 7 HOH B 57 557 556 HOH HOH . R 7 HOH B 58 558 557 HOH HOH . R 7 HOH B 59 559 559 HOH HOH . R 7 HOH B 60 560 558 HOH HOH . R 7 HOH B 61 561 561 HOH HOH . R 7 HOH B 62 562 560 HOH HOH . R 7 HOH B 63 563 564 HOH HOH . R 7 HOH B 64 564 562 HOH HOH . R 7 HOH B 65 565 566 HOH HOH . R 7 HOH B 66 566 563 HOH HOH . R 7 HOH B 67 567 567 HOH HOH . R 7 HOH B 68 568 565 HOH HOH . R 7 HOH B 69 569 568 HOH HOH . R 7 HOH B 70 570 569 HOH HOH . R 7 HOH B 71 571 572 HOH HOH . R 7 HOH B 72 572 571 HOH HOH . R 7 HOH B 73 573 570 HOH HOH . R 7 HOH B 74 574 574 HOH HOH . R 7 HOH B 75 575 573 HOH HOH . R 7 HOH B 76 576 575 HOH HOH . R 7 HOH B 77 577 576 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -28.86 23.761 9.261 1 53.81 ? C1 EDO 403 A 1 HETATM 2 O O1 EDO . . . E 4 -28.674 22.392 9.312 1 48.39 ? O1 EDO 403 A 1 HETATM 3 C C2 EDO . . . E 4 -27.657 24.448 8.8 1 51.08 ? C2 EDO 403 A 1 HETATM 4 O O2 EDO . . . E 4 -27.704 25.834 9.112 1 52.43 ? O2 EDO 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #