data_6QCK # _model_server_result.job_id zEcmJRpcUO65RYm1mQvVvQ _model_server_result.datetime_utc '2024-12-22 18:16:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6QCK # _exptl.entry_id 6QCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QCK _cell.length_a 91.136 _cell.length_b 91.136 _cell.length_c 132.735 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.136 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.136 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_545 ? A ? ? A ? ? ? ? ? ? ? 1.927 ? metalc ? metalc1 A O GLU 52 A GLU 50 1_555 E NA NA . A NA 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A O GLU 52 A GLU 50 1_555 E NA NA . A NA 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A O LEU 55 A LEU 53 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 A O ALA 58 A ALA 56 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc5 E NA NA . A NA 404 1_555 G O HOH . A HOH 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc6 E NA NA . A NA 404 1_555 G O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 107 n n S C1 DMS sing 108 n n S C2 DMS sing 109 n n C1 H11 DMS sing 110 n n C1 H12 DMS sing 111 n n C1 H13 DMS sing 112 n n C2 H21 DMS sing 113 n n C2 H22 DMS sing 114 n n C2 H23 DMS sing 115 n n # _atom_sites.entry_id 6QCK _atom_sites.fract_transf_matrix[1][1] 0.010973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 401 DMS DMS . C 3 HWK A 1 402 301 HWK LIG . D 4 NAD A 1 403 301 NAD NAD . E 5 NA A 1 404 1 NA NA . F 6 BGC A 1 405 1 BGC XXX . G 7 HOH A 1 501 863 HOH HOH . G 7 HOH A 2 502 864 HOH HOH . G 7 HOH A 3 503 828 HOH HOH . G 7 HOH A 4 504 407 HOH HOH . G 7 HOH A 5 505 892 HOH HOH . G 7 HOH A 6 506 885 HOH HOH . G 7 HOH A 7 507 423 HOH HOH . G 7 HOH A 8 508 888 HOH HOH . G 7 HOH A 9 509 873 HOH HOH . G 7 HOH A 10 510 894 HOH HOH . G 7 HOH A 11 511 405 HOH HOH . G 7 HOH A 12 512 810 HOH HOH . G 7 HOH A 13 513 801 HOH HOH . G 7 HOH A 14 514 891 HOH HOH . G 7 HOH A 15 515 635 HOH HOH . G 7 HOH A 16 516 742 HOH HOH . G 7 HOH A 17 517 893 HOH HOH . G 7 HOH A 18 518 434 HOH HOH . G 7 HOH A 19 519 785 HOH HOH . G 7 HOH A 20 520 886 HOH HOH . G 7 HOH A 21 521 815 HOH HOH . G 7 HOH A 22 522 420 HOH HOH . G 7 HOH A 23 523 595 HOH HOH . G 7 HOH A 24 524 432 HOH HOH . G 7 HOH A 25 525 443 HOH HOH . G 7 HOH A 26 526 616 HOH HOH . G 7 HOH A 27 527 901 HOH HOH . G 7 HOH A 28 528 803 HOH HOH . G 7 HOH A 29 529 851 HOH HOH . G 7 HOH A 30 530 841 HOH HOH . G 7 HOH A 31 531 617 HOH HOH . G 7 HOH A 32 532 437 HOH HOH . G 7 HOH A 33 533 781 HOH HOH . G 7 HOH A 34 534 867 HOH HOH . G 7 HOH A 35 535 779 HOH HOH . G 7 HOH A 36 536 458 HOH HOH . G 7 HOH A 37 537 416 HOH HOH . G 7 HOH A 38 538 425 HOH HOH . G 7 HOH A 39 539 438 HOH HOH . G 7 HOH A 40 540 454 HOH HOH . G 7 HOH A 41 541 861 HOH HOH . G 7 HOH A 42 542 836 HOH HOH . G 7 HOH A 43 543 804 HOH HOH . G 7 HOH A 44 544 776 HOH HOH . G 7 HOH A 45 545 788 HOH HOH . G 7 HOH A 46 546 481 HOH HOH . G 7 HOH A 47 547 771 HOH HOH . G 7 HOH A 48 548 819 HOH HOH . G 7 HOH A 49 549 748 HOH HOH . G 7 HOH A 50 550 445 HOH HOH . G 7 HOH A 51 551 466 HOH HOH . G 7 HOH A 52 552 799 HOH HOH . G 7 HOH A 53 553 440 HOH HOH . G 7 HOH A 54 554 450 HOH HOH . G 7 HOH A 55 555 459 HOH HOH . G 7 HOH A 56 556 455 HOH HOH . G 7 HOH A 57 557 900 HOH HOH . G 7 HOH A 58 558 848 HOH HOH . G 7 HOH A 59 559 496 HOH HOH . G 7 HOH A 60 560 862 HOH HOH . G 7 HOH A 61 561 795 HOH HOH . G 7 HOH A 62 562 840 HOH HOH . G 7 HOH A 63 563 460 HOH HOH . G 7 HOH A 64 564 484 HOH HOH . G 7 HOH A 65 565 475 HOH HOH . G 7 HOH A 66 566 820 HOH HOH . G 7 HOH A 67 567 465 HOH HOH . G 7 HOH A 68 568 596 HOH HOH . G 7 HOH A 69 569 889 HOH HOH . G 7 HOH A 70 570 768 HOH HOH . G 7 HOH A 71 571 467 HOH HOH . G 7 HOH A 72 572 898 HOH HOH . G 7 HOH A 73 573 594 HOH HOH . G 7 HOH A 74 574 769 HOH HOH . G 7 HOH A 75 575 824 HOH HOH . G 7 HOH A 76 576 463 HOH HOH . G 7 HOH A 77 577 884 HOH HOH . G 7 HOH A 78 578 800 HOH HOH . G 7 HOH A 79 579 822 HOH HOH . G 7 HOH A 80 580 489 HOH HOH . G 7 HOH A 81 581 717 HOH HOH . G 7 HOH A 82 582 446 HOH HOH . G 7 HOH A 83 583 853 HOH HOH . G 7 HOH A 84 584 449 HOH HOH . G 7 HOH A 85 585 834 HOH HOH . G 7 HOH A 86 586 479 HOH HOH . G 7 HOH A 87 587 718 HOH HOH . G 7 HOH A 88 588 429 HOH HOH . G 7 HOH A 89 589 869 HOH HOH . G 7 HOH A 90 590 510 HOH HOH . G 7 HOH A 91 591 833 HOH HOH . G 7 HOH A 92 592 865 HOH HOH . G 7 HOH A 93 593 725 HOH HOH . G 7 HOH A 94 594 491 HOH HOH . G 7 HOH A 95 595 486 HOH HOH . G 7 HOH A 96 596 791 HOH HOH . G 7 HOH A 97 597 780 HOH HOH . G 7 HOH A 98 598 868 HOH HOH . G 7 HOH A 99 599 855 HOH HOH . G 7 HOH A 100 600 830 HOH HOH . G 7 HOH A 101 601 509 HOH HOH . G 7 HOH A 102 602 743 HOH HOH . G 7 HOH A 103 603 746 HOH HOH . G 7 HOH A 104 604 817 HOH HOH . G 7 HOH A 105 605 492 HOH HOH . G 7 HOH A 106 606 519 HOH HOH . G 7 HOH A 107 607 789 HOH HOH . G 7 HOH A 108 608 502 HOH HOH . G 7 HOH A 109 609 796 HOH HOH . G 7 HOH A 110 610 500 HOH HOH . G 7 HOH A 111 611 872 HOH HOH . G 7 HOH A 112 612 846 HOH HOH . G 7 HOH A 113 613 514 HOH HOH . G 7 HOH A 114 614 778 HOH HOH . G 7 HOH A 115 615 875 HOH HOH . G 7 HOH A 116 616 504 HOH HOH . G 7 HOH A 117 617 522 HOH HOH . G 7 HOH A 118 618 877 HOH HOH . G 7 HOH A 119 619 527 HOH HOH . G 7 HOH A 120 620 783 HOH HOH . G 7 HOH A 121 621 526 HOH HOH . G 7 HOH A 122 622 808 HOH HOH . G 7 HOH A 123 623 842 HOH HOH . G 7 HOH A 124 624 634 HOH HOH . G 7 HOH A 125 625 814 HOH HOH . G 7 HOH A 126 626 515 HOH HOH . G 7 HOH A 127 627 871 HOH HOH . G 7 HOH A 128 628 793 HOH HOH . G 7 HOH A 129 629 632 HOH HOH . G 7 HOH A 130 630 858 HOH HOH . G 7 HOH A 131 631 726 HOH HOH . G 7 HOH A 132 632 744 HOH HOH . G 7 HOH A 133 633 807 HOH HOH . G 7 HOH A 134 634 860 HOH HOH . G 7 HOH A 135 635 792 HOH HOH . G 7 HOH A 136 636 547 HOH HOH . G 7 HOH A 137 637 532 HOH HOH . G 7 HOH A 138 638 812 HOH HOH . G 7 HOH A 139 639 809 HOH HOH . G 7 HOH A 140 640 712 HOH HOH . G 7 HOH A 141 641 550 HOH HOH . G 7 HOH A 142 642 798 HOH HOH . G 7 HOH A 143 643 897 HOH HOH . G 7 HOH A 144 644 782 HOH HOH . G 7 HOH A 145 645 813 HOH HOH . G 7 HOH A 146 646 826 HOH HOH . G 7 HOH A 147 647 787 HOH HOH . G 7 HOH A 148 648 854 HOH HOH . G 7 HOH A 149 649 786 HOH HOH . G 7 HOH A 150 650 825 HOH HOH . G 7 HOH A 151 651 806 HOH HOH . G 7 HOH A 152 652 745 HOH HOH . G 7 HOH A 153 653 829 HOH HOH . G 7 HOH A 154 654 797 HOH HOH . G 7 HOH A 155 655 772 HOH HOH . G 7 HOH A 156 656 837 HOH HOH . G 7 HOH A 157 657 823 HOH HOH . G 7 HOH A 158 658 784 HOH HOH . G 7 HOH A 159 659 832 HOH HOH . G 7 HOH A 160 660 773 HOH HOH . G 7 HOH A 161 661 805 HOH HOH . G 7 HOH A 162 662 816 HOH HOH . G 7 HOH A 163 663 732 HOH HOH . G 7 HOH A 164 664 790 HOH HOH . G 7 HOH A 165 665 895 HOH HOH . G 7 HOH A 166 666 883 HOH HOH . G 7 HOH A 167 667 802 HOH HOH . G 7 HOH A 168 668 857 HOH HOH . G 7 HOH A 169 669 747 HOH HOH . G 7 HOH A 170 670 774 HOH HOH . G 7 HOH A 171 671 879 HOH HOH . G 7 HOH A 172 672 880 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 16.173 -17.702 -16.654 1 49.75 ? S DMS 401 A 1 HETATM 2 O O DMS . . . B 2 14.732 -18.019 -16.777 1 57.46 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . B 2 16.515 -16.178 -17.589 1 46.28 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . B 2 16.554 -17.095 -14.984 1 63.56 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #