data_6QCN # _model_server_result.job_id af3Wnv2MzFchbrAAGuHFPA _model_server_result.datetime_utc '2024-11-29 21:56:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6QCN # _exptl.entry_id 6QCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QCN _cell.length_a 78.214 _cell.length_b 78.302 _cell.length_c 114.528 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 B SG CYS 143 B CYS 195 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 B SG CYS 148 B CYS 200 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 B SG CYS 169 B CYS 221 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 B SG CYS 172 B CYS 224 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id QUE _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms QUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QUE doub 339 n y C1 C6 QUE sing 340 n y C1 H1 QUE sing 341 n n C2 C3 QUE sing 342 n y C2 O30 QUE sing 343 n n C3 C4 QUE doub 344 n y C3 C9 QUE sing 345 n y C4 C5 QUE sing 346 n y C4 O12 QUE sing 347 n y C5 C6 QUE doub 348 n y C5 H5 QUE sing 349 n n C6 O29 QUE sing 350 n n C9 C10 QUE sing 351 n y C9 O13 QUE doub 352 n n C10 C11 QUE doub 353 n y C10 O27 QUE sing 354 n n C11 C14 QUE sing 355 n y C11 O12 QUE sing 356 n y C14 C15 QUE doub 357 n y C14 C19 QUE sing 358 n y C15 C16 QUE sing 359 n y C15 H15 QUE sing 360 n n C16 C17 QUE doub 361 n y C16 H16 QUE sing 362 n n C17 C18 QUE sing 363 n y C17 O24 QUE sing 364 n n C18 C19 QUE doub 365 n y C18 O23 QUE sing 366 n n C19 H19 QUE sing 367 n n O23 HO3 QUE sing 368 n n O24 HO4 QUE sing 369 n n O27 HO7 QUE sing 370 n n O29 HO9 QUE sing 371 n n O30 HO0 QUE sing 372 n n # _atom_sites.entry_id 6QCN _atom_sites.fract_transf_matrix[1][1] 0.012785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 3 AR6 A 1 402 402 AR6 AR6 . E 4 QUE A 1 403 403 QUE QUE . F 2 ZN B 1 401 401 ZN ZN . G 3 AR6 B 1 402 402 AR6 AR6 . H 5 HOH A 1 501 501 HOH HOH . H 5 HOH A 2 502 502 HOH HOH . H 5 HOH A 3 503 503 HOH HOH . H 5 HOH A 4 504 504 HOH HOH . H 5 HOH A 5 505 506 HOH HOH . H 5 HOH A 6 506 505 HOH HOH . H 5 HOH A 7 507 507 HOH HOH . H 5 HOH A 8 508 509 HOH HOH . H 5 HOH A 9 509 508 HOH HOH . H 5 HOH A 10 510 510 HOH HOH . H 5 HOH A 11 511 511 HOH HOH . I 5 HOH B 1 501 501 HOH HOH . I 5 HOH B 2 502 504 HOH HOH . I 5 HOH B 3 503 502 HOH HOH . I 5 HOH B 4 504 503 HOH HOH . I 5 HOH B 5 505 508 HOH HOH . I 5 HOH B 6 506 505 HOH HOH . I 5 HOH B 7 507 506 HOH HOH . I 5 HOH B 8 508 507 HOH HOH . I 5 HOH B 9 509 509 HOH HOH . I 5 HOH B 10 510 512 HOH HOH . I 5 HOH B 11 511 511 HOH HOH . I 5 HOH B 12 512 510 HOH HOH . I 5 HOH B 13 513 516 HOH HOH . I 5 HOH B 14 514 513 HOH HOH . I 5 HOH B 15 515 514 HOH HOH . I 5 HOH B 16 516 515 HOH HOH . I 5 HOH B 17 517 517 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QUE . . . E 4 9.78 -37.504 -15.378 1 70.1 ? C1 QUE 403 A 1 HETATM 2 C C2 QUE . . . E 4 10.91 -37.008 -14.763 1 77.02 ? C2 QUE 403 A 1 HETATM 3 C C3 QUE . . . E 4 11.311 -35.645 -14.935 1 74.92 ? C3 QUE 403 A 1 HETATM 4 C C4 QUE . . . E 4 10.497 -34.853 -15.758 1 80.41 ? C4 QUE 403 A 1 HETATM 5 C C5 QUE . . . E 4 9.362 -35.338 -16.406 1 81.75 ? C5 QUE 403 A 1 HETATM 6 C C6 QUE . . . E 4 9.001 -36.671 -16.195 1 83.96 ? C6 QUE 403 A 1 HETATM 7 C C9 QUE . . . E 4 12.506 -35.006 -14.298 1 81.1 ? C9 QUE 403 A 1 HETATM 8 C C10 QUE . . . E 4 12.725 -33.61 -14.561 1 79.91 ? C10 QUE 403 A 1 HETATM 9 C C11 QUE . . . E 4 11.883 -32.913 -15.381 1 71.92 ? C11 QUE 403 A 1 HETATM 10 C C14 QUE . . . E 4 12.085 -31.489 -15.662 1 74.25 ? C14 QUE 403 A 1 HETATM 11 C C15 QUE . . . E 4 11.233 -30.5 -15.165 1 77.97 ? C15 QUE 403 A 1 HETATM 12 C C16 QUE . . . E 4 11.489 -29.15 -15.399 1 72.84 ? C16 QUE 403 A 1 HETATM 13 C C17 QUE . . . E 4 12.624 -28.767 -16.094 1 77.9 ? C17 QUE 403 A 1 HETATM 14 C C18 QUE . . . E 4 13.501 -29.756 -16.583 1 72.32 ? C18 QUE 403 A 1 HETATM 15 C C19 QUE . . . E 4 13.245 -31.086 -16.334 1 78.19 ? C19 QUE 403 A 1 HETATM 16 O O12 QUE . . . E 4 10.803 -33.528 -15.978 1 79.8 ? O12 QUE 403 A 1 HETATM 17 O O13 QUE . . . E 4 13.326 -35.588 -13.546 1 60.25 ? O13 QUE 403 A 1 HETATM 18 O O23 QUE . . . E 4 14.664 -29.486 -17.244 1 68.66 ? O23 QUE 403 A 1 HETATM 19 O O24 QUE . . . E 4 12.858 -27.431 -16.279 1 69.14 ? O24 QUE 403 A 1 HETATM 20 O O27 QUE . . . E 4 13.814 -33.029 -13.973 1 67.28 ? O27 QUE 403 A 1 HETATM 21 O O29 QUE . . . E 4 7.911 -37.23 -16.79 1 62.62 ? O29 QUE 403 A 1 HETATM 22 O O30 QUE . . . E 4 11.598 -37.851 -13.954 1 65.56 ? O30 QUE 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #