data_6QD5 # _model_server_result.job_id RAkj_ONKczqELu1DjHe1hA _model_server_result.datetime_utc '2024-12-23 19:46:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 6QD5 # _exptl.entry_id 6QD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6QD5 _cell.length_a 112.331 _cell.length_b 112.331 _cell.length_c 87.94 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 224.662 0 0 3 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 112.331 194.562999 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 454 n n CBA CAB Y01 sing 455 n n CBA CAN Y01 sing 456 n n CAN CAJ Y01 sing 457 n n CAJ CAO Y01 sing 458 n n CAO CBB Y01 sing 459 n n CBB CAC Y01 sing 460 n n CBB CBE Y01 sing 461 n n CBE CAP Y01 sing 462 n n CBE CBI Y01 sing 463 n n CAP CAQ Y01 sing 464 n n CAQ CBG Y01 sing 465 n n CBG CBI Y01 sing 466 n n CBG CBD Y01 sing 467 n n CBI CAE Y01 sing 468 n n CBI CAU Y01 sing 469 n n CAU CAS Y01 sing 470 n n CAS CBF Y01 sing 471 n n CBF CBD Y01 sing 472 n n CBF CBH Y01 sing 473 n n CBD CAK Y01 sing 474 n n CAK CAI Y01 sing 475 n n CAI CAZ Y01 doub 476 n n CAZ CAV Y01 sing 477 n n CAZ CBH Y01 sing 478 n n CAV CBC Y01 sing 479 n n CBH CAD Y01 sing 480 n n CBH CAT Y01 sing 481 n n CAT CAR Y01 sing 482 n n CAR CBC Y01 sing 483 n n CBC OAW Y01 sing 484 n n OAW CAY Y01 sing 485 n n CAY OAG Y01 doub 486 n n CAY CAM Y01 sing 487 n n CAM CAL Y01 sing 488 n n CAL CAX Y01 sing 489 n n CAX OAH Y01 sing 490 n n CAX OAF Y01 doub 491 n n CAA HAA1 Y01 sing 492 n n CAA HAA2 Y01 sing 493 n n CAA HAA3 Y01 sing 494 n n CBA HBA Y01 sing 495 n n CAB HAB1 Y01 sing 496 n n CAB HAB2 Y01 sing 497 n n CAB HAB3 Y01 sing 498 n n CAN HAN1 Y01 sing 499 n n CAN HAN2 Y01 sing 500 n n CAJ HAJ1 Y01 sing 501 n n CAJ HAJ2 Y01 sing 502 n n CAO HAO1 Y01 sing 503 n n CAO HAO2 Y01 sing 504 n n CBB HBB Y01 sing 505 n n CAC HAC1 Y01 sing 506 n n CAC HAC2 Y01 sing 507 n n CAC HAC3 Y01 sing 508 n n CBE HBE Y01 sing 509 n n CAP HAP1 Y01 sing 510 n n CAP HAP2 Y01 sing 511 n n CAQ HAQ1 Y01 sing 512 n n CAQ HAQ2 Y01 sing 513 n n CBG HBG Y01 sing 514 n n CBD HBD Y01 sing 515 n n CAE HAE1 Y01 sing 516 n n CAE HAE2 Y01 sing 517 n n CAE HAE3 Y01 sing 518 n n CAU HAU1 Y01 sing 519 n n CAU HAU2 Y01 sing 520 n n CAS HAS1 Y01 sing 521 n n CAS HAS2 Y01 sing 522 n n CBF HBF Y01 sing 523 n n CAK HAK1 Y01 sing 524 n n CAK HAK2 Y01 sing 525 n n CAI HAI Y01 sing 526 n n CAV HAV1 Y01 sing 527 n n CAV HAV2 Y01 sing 528 n n CBC HBC Y01 sing 529 n n CAD HAD1 Y01 sing 530 n n CAD HAD2 Y01 sing 531 n n CAD HAD3 Y01 sing 532 n n CAT HAT1 Y01 sing 533 n n CAT HAT2 Y01 sing 534 n n CAR HAR1 Y01 sing 535 n n CAR HAR2 Y01 sing 536 n n CAM HAM1 Y01 sing 537 n n CAM HAM2 Y01 sing 538 n n CAL HAL1 Y01 sing 539 n n CAL HAL2 Y01 sing 540 n n OAH HAH Y01 sing 541 n n # _atom_sites.entry_id 6QD5 _atom_sites.fract_transf_matrix[1][1] 0.008902 _atom_sites.fract_transf_matrix[1][2] 0.00514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 401 1 BOG BOG . C 2 BOG A 1 402 2 BOG BOG . D 2 BOG A 1 403 3 BOG BOG . E 2 BOG A 1 404 4 BOG BOG . F 2 BOG A 1 405 5 BOG BOG . G 2 BOG A 1 406 6 BOG BOG . H 2 BOG A 1 407 7 BOG BOG . I 3 Y01 A 1 408 1 Y01 Y01 . J 4 PG4 A 1 409 1 PG4 PG4 . K 4 PG4 A 1 410 2 PG4 PG4 . L 5 HOH A 1 501 61 HOH HOH . L 5 HOH A 2 502 62 HOH HOH . L 5 HOH A 3 503 40 HOH HOH . L 5 HOH A 4 504 9 HOH HOH . L 5 HOH A 5 505 21 HOH HOH . L 5 HOH A 6 506 43 HOH HOH . L 5 HOH A 7 507 30 HOH HOH . L 5 HOH A 8 508 70 HOH HOH . L 5 HOH A 9 509 3 HOH HOH . L 5 HOH A 10 510 41 HOH HOH . L 5 HOH A 11 511 7 HOH HOH . L 5 HOH A 12 512 23 HOH HOH . L 5 HOH A 13 513 29 HOH HOH . L 5 HOH A 14 514 36 HOH HOH . L 5 HOH A 15 515 15 HOH HOH . L 5 HOH A 16 516 42 HOH HOH . L 5 HOH A 17 517 56 HOH HOH . L 5 HOH A 18 518 66 HOH HOH . L 5 HOH A 19 519 8 HOH HOH . L 5 HOH A 20 520 25 HOH HOH . L 5 HOH A 21 521 27 HOH HOH . L 5 HOH A 22 522 50 HOH HOH . L 5 HOH A 23 523 32 HOH HOH . L 5 HOH A 24 524 52 HOH HOH . L 5 HOH A 25 525 33 HOH HOH . L 5 HOH A 26 526 35 HOH HOH . L 5 HOH A 27 527 53 HOH HOH . L 5 HOH A 28 528 26 HOH HOH . L 5 HOH A 29 529 11 HOH HOH . L 5 HOH A 30 530 2 HOH HOH . L 5 HOH A 31 531 19 HOH HOH . L 5 HOH A 32 532 13 HOH HOH . L 5 HOH A 33 533 14 HOH HOH . L 5 HOH A 34 534 37 HOH HOH . L 5 HOH A 35 535 4 HOH HOH . L 5 HOH A 36 536 1 HOH HOH . L 5 HOH A 37 537 28 HOH HOH . L 5 HOH A 38 538 67 HOH HOH . L 5 HOH A 39 539 44 HOH HOH . L 5 HOH A 40 540 16 HOH HOH . L 5 HOH A 41 541 48 HOH HOH . L 5 HOH A 42 542 5 HOH HOH . L 5 HOH A 43 543 31 HOH HOH . L 5 HOH A 44 544 24 HOH HOH . L 5 HOH A 45 545 38 HOH HOH . L 5 HOH A 46 546 49 HOH HOH . L 5 HOH A 47 547 20 HOH HOH . L 5 HOH A 48 548 47 HOH HOH . L 5 HOH A 49 549 12 HOH HOH . L 5 HOH A 50 550 18 HOH HOH . L 5 HOH A 51 551 39 HOH HOH . L 5 HOH A 52 552 17 HOH HOH . L 5 HOH A 53 553 60 HOH HOH . L 5 HOH A 54 554 54 HOH HOH . L 5 HOH A 55 555 72 HOH HOH . L 5 HOH A 56 556 22 HOH HOH . L 5 HOH A 57 557 68 HOH HOH . L 5 HOH A 58 558 55 HOH HOH . L 5 HOH A 59 559 65 HOH HOH . L 5 HOH A 60 560 51 HOH HOH . L 5 HOH A 61 561 10 HOH HOH . L 5 HOH A 62 562 58 HOH HOH . L 5 HOH A 63 563 6 HOH HOH . L 5 HOH A 64 564 69 HOH HOH . L 5 HOH A 65 565 57 HOH HOH . L 5 HOH A 66 566 34 HOH HOH . L 5 HOH A 67 567 64 HOH HOH . L 5 HOH A 68 568 71 HOH HOH . L 5 HOH A 69 569 59 HOH HOH . L 5 HOH A 70 570 46 HOH HOH . L 5 HOH A 71 571 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 3 128.685 80.73 0.515 1 69.76 ? CAA Y01 408 A 1 HETATM 2 C CBA Y01 . . . I 3 127.302 81.353 0.261 1 67.08 ? CBA Y01 408 A 1 HETATM 3 C CAB Y01 . . . I 3 126.857 82.081 1.552 1 64.13 ? CAB Y01 408 A 1 HETATM 4 C CAN Y01 . . . I 3 127.446 82.407 -0.87 1 60.85 ? CAN Y01 408 A 1 HETATM 5 C CAJ Y01 . . . I 3 128.16 81.826 -2.13 1 53.02 ? CAJ Y01 408 A 1 HETATM 6 C CAO Y01 . . . I 3 128.438 83.058 -3.071 1 54.88 ? CAO Y01 408 A 1 HETATM 7 C CBB Y01 . . . I 3 129.37 82.707 -4.254 1 55.68 ? CBB Y01 408 A 1 HETATM 8 C CAC Y01 . . . I 3 128.781 81.511 -4.988 1 55.26 ? CAC Y01 408 A 1 HETATM 9 C CBE Y01 . . . I 3 129.401 83.975 -5.145 1 55.49 ? CBE Y01 408 A 1 HETATM 10 C CAP Y01 . . . I 3 129.82 85.188 -4.262 1 65.77 ? CAP Y01 408 A 1 HETATM 11 C CAQ Y01 . . . I 3 130.864 86.065 -5.124 1 62.12 ? CAQ Y01 408 A 1 HETATM 12 C CBG Y01 . . . I 3 130.532 85.473 -6.501 1 62.24 ? CBG Y01 408 A 1 HETATM 13 C CBI Y01 . . . I 3 130.359 83.958 -6.289 1 59.3 ? CBI Y01 408 A 1 HETATM 14 C CAE Y01 . . . I 3 131.747 83.328 -5.926 1 54.69 ? CAE Y01 408 A 1 HETATM 15 C CAU Y01 . . . I 3 129.791 83.351 -7.619 1 54.95 ? CAU Y01 408 A 1 HETATM 16 C CAS Y01 . . . I 3 130.687 83.717 -8.777 1 50.39 ? CAS Y01 408 A 1 HETATM 17 C CBF Y01 . . . I 3 130.906 85.189 -8.882 1 61.75 ? CBF Y01 408 A 1 HETATM 18 C CBD Y01 . . . I 3 131.553 85.741 -7.605 1 64.14 ? CBD Y01 408 A 1 HETATM 19 C CAK Y01 . . . I 3 131.73 87.269 -7.671 1 70.73 ? CAK Y01 408 A 1 HETATM 20 C CAI Y01 . . . I 3 131.79 87.781 -9.148 1 72 ? CAI Y01 408 A 1 HETATM 21 C CAZ Y01 . . . I 3 132.249 86.923 -10.072 1 71.39 ? CAZ Y01 408 A 1 HETATM 22 C CAV Y01 . . . I 3 132.915 87.47 -11.361 1 72.13 ? CAV Y01 408 A 1 HETATM 23 C CBH Y01 . . . I 3 131.78 85.484 -10.123 1 70.71 ? CBH Y01 408 A 1 HETATM 24 C CAD Y01 . . . I 3 133.003 84.522 -10.12 1 75.23 ? CAD Y01 408 A 1 HETATM 25 C CAT Y01 . . . I 3 130.944 85.243 -11.381 1 69.7 ? CAT Y01 408 A 1 HETATM 26 C CAR Y01 . . . I 3 131.636 85.724 -12.67 1 69.62 ? CAR Y01 408 A 1 HETATM 27 C CBC Y01 . . . I 3 132.021 87.2 -12.582 1 74.18 ? CBC Y01 408 A 1 HETATM 28 O OAW Y01 . . . I 3 132.747 87.57 -13.713 1 82.68 ? OAW Y01 408 A 1 HETATM 29 C CAY Y01 . . . I 3 132.066 88.536 -14.484 1 89.41 ? CAY Y01 408 A 1 HETATM 30 O OAG Y01 . . . I 3 130.887 88.631 -14.353 1 100.99 ? OAG Y01 408 A 1 HETATM 31 C CAM Y01 . . . I 3 132.823 89.453 -15.474 1 90.39 ? CAM Y01 408 A 1 HETATM 32 C CAL Y01 . . . I 3 133.98 88.679 -16.152 1 90.51 ? CAL Y01 408 A 1 HETATM 33 C CAX Y01 . . . I 3 133.451 87.641 -17.164 1 86.82 ? CAX Y01 408 A 1 HETATM 34 O OAH Y01 . . . I 3 133.442 86.424 -16.859 1 80.52 ? OAH Y01 408 A 1 HETATM 35 O OAF Y01 . . . I 3 133.039 87.993 -18.307 1 89.85 ? OAF Y01 408 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #