data_6QD5
#
_model_server_result.job_id            S6ZVDghgjs-nWAfSbprQYQ 
_model_server_result.datetime_utc      '2024-12-23 20:26:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qd5 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
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_entry.id    6QD5 
#
_exptl.entry_id    6QD5 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              194.226 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'TETRAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6QD5 
_cell.length_a            112.331 
_cell.length_b            112.331 
_cell.length_c            87.94 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 224.662 0 0 
3 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 112.331 194.562999 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
#
_chem_comp.formula           'C8 H18 O5' 
_chem_comp.formula_weight    194.226 
_chem_comp.id                PG4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TETRAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PG4 sing 285 n n 
O1 HO1 PG4 sing 286 n n 
C1 C2 PG4 sing 287 n n 
C1 H11 PG4 sing 288 n n 
C1 H12 PG4 sing 289 n n 
C2 O2 PG4 sing 290 n n 
C2 H21 PG4 sing 291 n n 
C2 H22 PG4 sing 292 n n 
O2 C3 PG4 sing 293 n n 
C3 C4 PG4 sing 294 n n 
C3 H31 PG4 sing 295 n n 
C3 H32 PG4 sing 296 n n 
C4 O3 PG4 sing 297 n n 
C4 H41 PG4 sing 298 n n 
C4 H42 PG4 sing 299 n n 
O3 C5 PG4 sing 300 n n 
C5 C6 PG4 sing 301 n n 
C5 H51 PG4 sing 302 n n 
C5 H52 PG4 sing 303 n n 
C6 O4 PG4 sing 304 n n 
C6 H61 PG4 sing 305 n n 
C6 H62 PG4 sing 306 n n 
O4 C7 PG4 sing 307 n n 
C7 C8 PG4 sing 308 n n 
C7 H71 PG4 sing 309 n n 
C7 H72 PG4 sing 310 n n 
C8 O5 PG4 sing 311 n n 
C8 H81 PG4 sing 312 n n 
C8 H82 PG4 sing 313 n n 
O5 HO5 PG4 sing 314 n n 
#
_atom_sites.entry_id                     6QD5 
_atom_sites.fract_transf_matrix[1][1]    0.008902 
_atom_sites.fract_transf_matrix[1][2]    0.00514 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 401 1 BOG BOG . 
C 2 BOG A 1 402 2 BOG BOG . 
D 2 BOG A 1 403 3 BOG BOG . 
E 2 BOG A 1 404 4 BOG BOG . 
F 2 BOG A 1 405 5 BOG BOG . 
G 2 BOG A 1 406 6 BOG BOG . 
H 2 BOG A 1 407 7 BOG BOG . 
I 3 Y01 A 1 408 1 Y01 Y01 . 
J 4 PG4 A 1 409 1 PG4 PG4 . 
K 4 PG4 A 1 410 2 PG4 PG4 . 
L 5 HOH A 1 501 61 HOH HOH . 
L 5 HOH A 2 502 62 HOH HOH . 
L 5 HOH A 3 503 40 HOH HOH . 
L 5 HOH A 4 504 9 HOH HOH . 
L 5 HOH A 5 505 21 HOH HOH . 
L 5 HOH A 6 506 43 HOH HOH . 
L 5 HOH A 7 507 30 HOH HOH . 
L 5 HOH A 8 508 70 HOH HOH . 
L 5 HOH A 9 509 3 HOH HOH . 
L 5 HOH A 10 510 41 HOH HOH . 
L 5 HOH A 11 511 7 HOH HOH . 
L 5 HOH A 12 512 23 HOH HOH . 
L 5 HOH A 13 513 29 HOH HOH . 
L 5 HOH A 14 514 36 HOH HOH . 
L 5 HOH A 15 515 15 HOH HOH . 
L 5 HOH A 16 516 42 HOH HOH . 
L 5 HOH A 17 517 56 HOH HOH . 
L 5 HOH A 18 518 66 HOH HOH . 
L 5 HOH A 19 519 8 HOH HOH . 
L 5 HOH A 20 520 25 HOH HOH . 
L 5 HOH A 21 521 27 HOH HOH . 
L 5 HOH A 22 522 50 HOH HOH . 
L 5 HOH A 23 523 32 HOH HOH . 
L 5 HOH A 24 524 52 HOH HOH . 
L 5 HOH A 25 525 33 HOH HOH . 
L 5 HOH A 26 526 35 HOH HOH . 
L 5 HOH A 27 527 53 HOH HOH . 
L 5 HOH A 28 528 26 HOH HOH . 
L 5 HOH A 29 529 11 HOH HOH . 
L 5 HOH A 30 530 2 HOH HOH . 
L 5 HOH A 31 531 19 HOH HOH . 
L 5 HOH A 32 532 13 HOH HOH . 
L 5 HOH A 33 533 14 HOH HOH . 
L 5 HOH A 34 534 37 HOH HOH . 
L 5 HOH A 35 535 4 HOH HOH . 
L 5 HOH A 36 536 1 HOH HOH . 
L 5 HOH A 37 537 28 HOH HOH . 
L 5 HOH A 38 538 67 HOH HOH . 
L 5 HOH A 39 539 44 HOH HOH . 
L 5 HOH A 40 540 16 HOH HOH . 
L 5 HOH A 41 541 48 HOH HOH . 
L 5 HOH A 42 542 5 HOH HOH . 
L 5 HOH A 43 543 31 HOH HOH . 
L 5 HOH A 44 544 24 HOH HOH . 
L 5 HOH A 45 545 38 HOH HOH . 
L 5 HOH A 46 546 49 HOH HOH . 
L 5 HOH A 47 547 20 HOH HOH . 
L 5 HOH A 48 548 47 HOH HOH . 
L 5 HOH A 49 549 12 HOH HOH . 
L 5 HOH A 50 550 18 HOH HOH . 
L 5 HOH A 51 551 39 HOH HOH . 
L 5 HOH A 52 552 17 HOH HOH . 
L 5 HOH A 53 553 60 HOH HOH . 
L 5 HOH A 54 554 54 HOH HOH . 
L 5 HOH A 55 555 72 HOH HOH . 
L 5 HOH A 56 556 22 HOH HOH . 
L 5 HOH A 57 557 68 HOH HOH . 
L 5 HOH A 58 558 55 HOH HOH . 
L 5 HOH A 59 559 65 HOH HOH . 
L 5 HOH A 60 560 51 HOH HOH . 
L 5 HOH A 61 561 10 HOH HOH . 
L 5 HOH A 62 562 58 HOH HOH . 
L 5 HOH A 63 563 6 HOH HOH . 
L 5 HOH A 64 564 69 HOH HOH . 
L 5 HOH A 65 565 57 HOH HOH . 
L 5 HOH A 66 566 34 HOH HOH . 
L 5 HOH A 67 567 64 HOH HOH . 
L 5 HOH A 68 568 71 HOH HOH . 
L 5 HOH A 69 569 59 HOH HOH . 
L 5 HOH A 70 570 46 HOH HOH . 
L 5 HOH A 71 571 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG4 . . . J 4 128.243 62.917 9.211 1 66.33 ? O1 PG4 409 A 1 
HETATM 2 C C1 PG4 . . . J 4 128.755 64.155 9.654 1 84.53 ? C1 PG4 409 A 1 
HETATM 3 C C2 PG4 . . . J 4 128.055 65.341 8.965 1 88.64 ? C2 PG4 409 A 1 
HETATM 4 O O2 PG4 . . . J 4 128.923 66.453 8.857 1 93.14 ? O2 PG4 409 A 1 
HETATM 5 C C3 PG4 . . . J 4 129.049 67.315 9.966 1 74.81 ? C3 PG4 409 A 1 
HETATM 6 C C4 PG4 . . . J 4 129.065 68.759 9.446 1 59.65 ? C4 PG4 409 A 1 
HETATM 7 O O3 PG4 . . . J 4 129.307 69.685 10.478 1 72.15 ? O3 PG4 409 A 1 
HETATM 8 C C5 PG4 . . . J 4 128.941 69.269 11.768 1 74.25 ? C5 PG4 409 A 1 
HETATM 9 C C6 PG4 . . . J 4 128.638 70.495 12.609 1 75.23 ? C6 PG4 409 A 1 
HETATM 10 O O4 PG4 . . . J 4 127.394 70.353 13.248 1 83.49 ? O4 PG4 409 A 1 
HETATM 11 C C7 PG4 . . . J 4 127.135 69.122 13.874 1 80.33 ? C7 PG4 409 A 1 
HETATM 12 C C8 PG4 . . . J 4 125.78 69.203 14.582 1 69.86 ? C8 PG4 409 A 1 
HETATM 13 O O5 PG4 . . . J 4 125.508 67.984 15.228 1 69.82 ? O5 PG4 409 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
#